BAC Information

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BAC

Clone NameB6Ng01-170G23
Chromosome19 (Build37)12 (Build37)
Map Location 9,377,328 - 9,378,24979,720,819 - 79,721,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2
Downstream geneLOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170G23.bB6Ng01-170G23.g
ACCDH961147DH961148
length922799
definitionDH961147|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G23, 5' end.DH961148|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,377,328 - 9,378,249)(79,720,819 - 79,721,372)
sequence
gaattctcacacatatcccattggtaaaaatactttgcaataatcaagtt
taagaaaactaagaatagtggccaatcagactcttgttggagtaaatatt
tattctgaaatcaagatgtctactctgccttagatcattcagttccccca
caaaagacacacaagtttcatatttgtaataatcctaaatcagaactaaa
gctgggtagatatttactcatcactggattacaacttcttccgtattaat
aattctgagttataacttgttatgttctatctggggcacttttaactcca
actgagcagcccttatggccatgtttttataactcacctaacctatggca
tccttgttcttttcacctttttgtccttctttggtctctctccagacacc
aagcctgcgtatcaaatctctgcctatctctgttctgcccatctgtaggc
agtaggcatttttattcaccaatcagggattaaattctgtgaggtaccaa
taactgacacctcacacactggatggagaaatagtaaggttcttttcagt
tcaaagtcaccatgtgccacatagtgaggcactgtcaaagcaagcaagca
agcaaacaaacaaccaatgaaccaaccaaccaatgaaccaacaaaccaaa
caaacaaacaaacaagtaagtctgtcatggtccttggagtcaaaatatac
ttgtcctttaaaggaaagctcgttcctattgttgttcatcttatagggtt
accaggatccctcagagttaagtctctacttgcatatgtagcagaggatg
tcctagttggccatcaattggaggagaggccttggtcttgtgaagatcat
atgttctagtacaggggaatgccagggccaggaagcagagtgagtgggtt
gggccgctggcgtggggggagg
gaattctattgagtatttttgtatcgatattgataagggaaattggtctg
aagttctctatctttgttgggtctttctgtggtttaggtatcaaagtaat
tgtggcttcatagaataaattgggtacaggaccttctgcttctattttgt
ggaataggttgagaagaactggaattatgtcttcttgaatttctgataaa
agtctgcactaaacccatctggtcctgggctttttttggttgggagacta
ttgatgactgcttctatttctttagggaatataggactgtttatctcatt
aacctgatcctgatttaactttggtacctggtatctgtctagaaatttgt
ccatttcatctaggttttccagttttgttgagtatatccttttatagaag
gatctgatggtattttggatttcttcaggatctgctcttatgtctctctt
ttcatttctgattttgttaactaggatgctgtccctgtgacgtctagtga
ttctggctaagggtttatctatcttgttgattttctcaaagacccagctc
ctcgtttggttgattctttgaatagttcttcttgtttccacttggttgat
ttcgtccctgagtttgattatttcctgcagtctactcctcttgggtgaat
ttgtttccttttgttccatagcttttagatgtattatttagctgctagtg
tgtgctctctctagtttctttttggaggcactcagagctatgagttttcc
tcttagaaatgctttcattgagtcccataagtttgggtatgttgtggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9377328_9378249
seq2: B6Ng01-170G23.b_44_965

seq1  GAATTCTCACACATATCCCATTGGTAAAAATACTTTGCAATAATCAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACATATCCCATTGGTAAAAATACTTTGCAATAATCAAGTT  50

seq1  TAAGAAAACTAAGAATAGTGGCCAATCAGACTCTTGTTGGAGTAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACTAAGAATAGTGGCCAATCAGACTCTTGTTGGAGTAAATATT  100

seq1  TATTCTGAAATCAAGATGTCTACTCTGCCTTAGATCATTCAGTTCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAAATCAAGATGTCTACTCTGCCTTAGATCATTCAGTTCCCCCA  150

seq1  CAAAAGACACACAAGTTTCATATTTGTAATAATCCTAAATCAGAACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACACACAAGTTTCATATTTGTAATAATCCTAAATCAGAACTAAA  200

seq1  GCTGGGTAGATATTTACTCATCACTGGATTACAACTTCTTCCGTATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTAGATATTTACTCATCACTGGATTACAACTTCTTCCGTATTAAT  250

seq1  AATTCTGAGTTATAACTTGTTATGTTCTATCTGGGGCACTTTTAACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGTTATAACTTGTTATGTTCTATCTGGGGCACTTTTAACTCCA  300

seq1  ACTGAGCAGCCCTTATGGCCATGTTTTTATAACTCACCTAACCTATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAGCCCTTATGGCCATGTTTTTATAACTCACCTAACCTATGGCA  350

seq1  TCCTTGTTCTTTTCACCTTTTTGTCCTTCTTTGGTCTCTCTCCAGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTCTTTTCACCTTTTTGTCCTTCTTTGGTCTCTCTCCAGACACC  400

seq1  AAGCCTGCGTATCAAATCTCTGCCTATCTCTGTTCTGCCCATCTGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCGTATCAAATCTCTGCCTATCTCTGTTCTGCCCATCTGTAGGC  450

seq1  AGTAGGCATTTTTATTCACCAATCAGGGATTAAATTCTGTGAGGTACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCATTTTTATTCACCAATCAGGGATTAAATTCTGTGAGGTACCAA  500

seq1  TAACTGACACCTCACACACTGGATGGAGAAATAGTAAGGTTCTTTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACACCTCACACACTGGATGGAGAAATAGTAAGGTTCTTTTCAGT  550

seq1  TCAAAGTCACCATGTGCCACATAGTGAGGCACTGTCAAAGCAAGCAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCACCATGTGCCACATAGTGAGGCACTGTCAAAGCAAGCAAGCA  600

seq1  AGCAAACAAACAACCAATGAACCAACCAACCAATGAACCAACAAACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAAACAACCAATGAACCAACCAACCAATGAACCAACAAACCAAA  650

seq1  CAAACAAACAAACAAGTAAGTCTGTCATGGTCCTTGGAGTCAAAATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAGTAAGTCTGTCATGGTCCTTGGAGTCAAAATATAC  700

seq1  TTGTCCTTTAAAGGAAAGCTCGTTCCTATTGTTGTTCATCTTATAGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTAAAGGAAAGCTCGTTCCTATTGTTGTTCATCTTATAGGGTT  750

seq1  ACCAGGATCCCTCAGAGTTAAGTCTCTACTTGCATATGTAGCAGAGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATCCCTCAGAGTTAAGTCTCTACTTGCATATGTAGCAGAGGATG  800

seq1  TCCTAGTTGGCCATCAATTGGAGGAGAGGCCTTGGTCTTGTGAAGATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTGGCCATCAATTGGAGGAGAGGCCTTGGTCTTGTGAAGATCAT  850

seq1  ATGTTCTAGTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGAGTGGGT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTTCTAGTACAGGGGAATGCCAGGGCCAGGAAGCA-GAGTGAGTGGGT  899

seq1  TGGGTAGCAGG-GTGGGGGGAGG  922
      ||||  || || |||||||||||
seq2  TGGGCCGCTGGCGTGGGGGGAGG  922

seq1: chr12_79720819_79721372
seq2: B6Ng01-170G23.g_76_632 (reverse)

seq1  ATCAACCAATCCAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAA  50
      ||||||||| | ||||||||| ||||||||||||||||||||||||||||
seq2  ATCAACCAAACGAGGAGCTGGGTCTTTGAGAAAATCAACAAGATAGATAA  50

seq1  ACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACA  100
      ||||||||||||| |||||||| | |||||||||| ||||||| ||||||
seq2  ACCCTTAGCCAGAATCACTAGACGTCACAGGGACAGCATCCTAGTTAACA  100

seq1  AAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA  150
      ||||||||||||||||| ||||||||| | ||||||||||||||||||||
seq2  AAATCAGAAATGAAAAGAGAGACATAAGAGCAGATCCTGAAGAAATCCAA  150

seq1  AACACCATCAGATCCTTCTACAAAAAGCTATACTCAACAAAACTGGAAAA  200
      || ||||||||||||||||| |||| | ||||||||||||||||||||||
seq2  AATACCATCAGATCCTTCTATAAAAGGATATACTCAACAAAACTGGAAAA  200

seq1  CCTGGATAAAATGGACAAATTTCTAGACAGATACTAGGTACCAAAGTTAA  250
      ||| ||| |||||||||||||||||||||||||| |||||||||||||||
seq2  CCTAGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAA  250

seq1  ATCAGAATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATA  300
      ||||| |||||||||||||  ||||||||||||||| |||||||||||||
seq2  ATCAGGATCAGGTTAATGAGATAAACAGTCCTATATTCCCTAAAGAAATA  300

seq1  GAAGCAGTCATTAATAGTTTC----CCAAAAAAAGCCCAAAACCAGATGG  346
      ||||||||||| |||||| ||    ||||||||||||||  |||||||||
seq2  GAAGCAGTCATCAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGG  350

seq1  GTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTC  396
      |||||||||||| || |||||||  ||| |||||||  ||||||||||||
seq2  GTTTAGTGCAGACTTTTATCAGAAATTC-AAGAAGACATAATTCCAGTTC  399

seq1  TGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCA  446
      | | ||| ||||||||||||||||||||||||||| || ||||||||| |
seq2  TTCTCAACCTATTCCACAAAATAGAAGCAGAAGGTCCTGTACCCAATTTA  449

seq1  TTCTATGAAGCCACAATTACTCTGATACCTATTCCACAGAAAGACCCAAC  496
      ||||||||||||||||||||| |||||||||  |||||||||||||||||
seq2  TTCTATGAAGCCACAATTACTTTGATACCTAAACCACAGAAAGACCCAAC  499

seq1  AAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAA  546
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AAAGATAGAGAACTTCAGACCAATTTCCCTTATCAATATCGATACAAAAA  549

seq1  TCCTCAAT  554
      | ||||||
seq2  TACTCAAT  557