BAC Information

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BAC

Clone NameB6Ng01-171A24
Chromosome19 (Build37)
Map Location 11,960,293 - 12,096,439
singlet/doubletdoublet
Overlap geneEG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1
Upstream genePrpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845
Downstream geneOlfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171A24.bB6Ng01-171A24.g
ACCGA000045GA000046
length1,080565
definitionB6Ng01-171A24.b B6Ng01-171A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,960,293 - 11,961,370)(12,095,869 - 12,096,439)
sequence
ctcctcggtccctcctatttcatttcccattgtggacaatctgggttact
taatttctgtcaaaaaaaaaatggtgtaaatgaatagccacgttggatta
gagtacatcaacaattctcaacgttctctgcaccataggaattttacagt
gttctctctgaacagcatagtaattgtgatagagttaatagtctgctatt
tcttgtgataagcattgtccatgcatcatctcagtctattcccacaacta
tcccatgaggggaggggaatagtattgctcccaatttgcagattaggaaa
atgaggactcaaaaaagtaagttactcaaaagcatataactgatgggaaa
ctgagccaaatttttaattaaaaaatgtgtgtgtgtgtgtgtgtgtgtgt
gtgttgcccagaagttgacatcaggtgccttcctctatcactgtctgcct
tattttttgagacaagttctccctctaaacctgaaggtttccagtttatc
tacactgattagccagcaagcaacagagattctcctgcctccaccttcag
cacgggaattacaagtgttttatctcacttttttcacatgggtgctggga
tctaaatgctttattttccagctgagccatctccccagtattgggtctgc
ctgatcttttaaccattcttgtgcattgcttcaaacccccattttttaat
ttgattctacccaattttaacccttaaaaacaatgagcaaatgatttttc
aggtaatttgctttgcccccaactgacctcatcactgaaaacatgaagaa
gtgactaaaatacagtccctaaggaaaatgtaccagtggaatagccctga
tgcaatttaactctgggtacagtgtttctcatcttgctgatttcggttcc
caagctgacctcagtcatctcaggggaccaacaacgggtttgttagccag
atagttatgaatgttgtttaaaattattcagtctcaataactattggtga
ctcagggtaagttcaagctactaagatgtgtcagcaaggccaccttgttc
atcttggaccaagaagggtagaatggagta
actcccataggcctccaggagtatgttgtggcatgcaaggacacacacat
gtgcacacacctaataaatgtgataaagttttaaagtacaatacccaaag
tgcgttccttttgtttttgatgttgtacttttccataacaaaagtatttc
ctccgcaggaagtagaggaaccaggaggcaatggagcagaacgtcagcta
cagcagggtgaaagaatttgtttgtgaaggactgacggacacagtcccaa
gagctgagtttggtcttcttttctcttcttggtgtacacagcaactgggc
tgggcagcctcctcatcatggtcacggcaacctgagagtgcctcctccac
acccccattttttctctctctgtgatgacatttgatcaatacatggccat
ctccaagcccctacaatatgtgagcatcatgagtagtaggcggtgccaga
gcccacattgtggcttcctggtgggaaactttgtccactccattgtgcag
atctccctcttactcccacttcctttctttggacccaatgttgttgatgg
tttctactgtgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11960293_11961370
seq2: B6Ng01-171A24.b_11_1080

seq1  CCTCCTATTTCATTTCCCATTGTGGACAATCTGGGTTACTTAATTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATTTCATTTCCCATTGTGGACAATCTGGGTTACTTAATTTCTGT  50

seq1  CAAAAAAAAAATGGTGTAAATGAATAGCCACGTTGGATTAGAGTACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAATGGTGTAAATGAATAGCCACGTTGGATTAGAGTACATCA  100

seq1  ACAATTCTCAACGTTCTCTGCACCATAGGAATTTTACAGTGTTCTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTCAACGTTCTCTGCACCATAGGAATTTTACAGTGTTCTCTCTG  150

seq1  AACAGCATAGTAATTGTGATAGAGTTAATAGTCTGCTATTTCTTGTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATAGTAATTGTGATAGAGTTAATAGTCTGCTATTTCTTGTGATA  200

seq1  AGCATTGTCCATGCATCATCTCAGTCTATTCCCACAACTATCCCATGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTCCATGCATCATCTCAGTCTATTCCCACAACTATCCCATGAGG  250

seq1  GGAGGGGAATAGTATTGCTCCCAATTTGCAGATTAGGAAAATGAGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAATAGTATTGCTCCCAATTTGCAGATTAGGAAAATGAGGACTC  300

seq1  AAAAAAGTAAGTTACTCAAAAGCATATAACTGATGGGAAACTGAGCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTAAGTTACTCAAAAGCATATAACTGATGGGAAACTGAGCCAAA  350

seq1  TTTTTAATTAAAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTAAAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCCA  400

seq1  GAAGTTGACATCAGGTGCCTTCCTCTATCACTGTCTGCCTTATTTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGACATCAGGTGCCTTCCTCTATCACTGTCTGCCTTATTTTTTGA  450

seq1  GACAAGTTCTCCCTCTAAACCTGAAGGTTTCCAGTTTATCTACACTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTCTCCCTCTAAACCTGAAGGTTTCCAGTTTATCTACACTGATT  500

seq1  AGCCAGCAAGCAACAGAGATTCTCCTGCCTCCACCTTCAGCACGGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAAGCAACAGAGATTCTCCTGCCTCCACCTTCAGCACGGGAATT  550

seq1  ACAAGTGTTTTATCTCACTTTTTTCACATGGGTGCTGGGATCTAAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTTTATCTCACTTTTTTCACATGGGTGCTGGGATCTAAATGCT  600

seq1  TTATTTTCCAGCTGAGCCATCTCCCCAGTATTGGGTCTGCCTGATCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCAGCTGAGCCATCTCCCCAGTATTGGGTCTGCCTGATCTTTT  650

seq1  AACCATTCTTGTGCATTGCTTCAAACCCCCATTTTTTAATTTGATTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTTGTGCATTGCTTCAAACCCCCATTTTTTAATTTGATTCTAC  700

seq1  CCAATTTTAACCCTTAAAAACAATGAGCAAATGATTTTTCAGGTAATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTAACCCTTAAAAACAATGAGCAAATGATTTTTCAGGTAATTTG  750

seq1  CTTTGCCCCCAACTGACCTCATCACTGAAAACATGAAGAAGTGACTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCCCAACTGACCTCATCACTGAAAACATGAAGAAGTGACTAAAA  800

seq1  TACAGTCCCTAAGGAAAATGTACCAGTGGAATAGCCCTGATGCAATTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCCTAAGGAAAATGTACCAGTGGAATAGCCCTGATGCAATTTAA  850

seq1  CTCTTGGGTACAGTGTTTCTCATCTTGCTGATTTCGGTTTCCCAAGCTGA  900
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTC-TGGGTACAGTGTTTCTCATCTTGCTGATTTCGG-TTCCCAAGCTGA  898

seq1  CCTCAGTCATCTCAGGGGACCAACAAC-GGTTTGTTAGCCAAGATAGTTA  949
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CCTCAGTCATCTCAGGGGACCAACAACGGGTTTGTTAGCC-AGATAGTTA  947

seq1  TGAATGTTGTTTTAAAATAATTTCAAGTCTCAAT-ACTATT-GTGACTTC  997
      ||||||||| |||||||| |||   ||||||||| |||||| ||||||  
seq2  TGAATGTTG-TTTAAAATTATT--CAGTCTCAATAACTATTGGTGACT--  992

seq1  AAGGGTAAGTTCCAAGCTACCAAGATGTTGCAAGCAAAAGCCA-CTTG-T  1045
       |||||||||| |||||||| |||||| ||  ||| || |||| |||| |
seq2  CAGGGTAAGTT-CAAGCTACTAAGATG-TGTCAGC-AAGGCCACCTTGTT  1039

seq1  CACCTTGAACAAAGAAAAGGGTAGAATGGAGTA  1078
      || |||| || |||  |||||||||||||||||
seq2  CATCTTGGACCAAG--AAGGGTAGAATGGAGTA  1070

seq1: chr19_12095869_12096439
seq2: B6Ng01-171A24.g_61_631 (reverse)

seq1  ACATCACAGTAGAAACCATCAACAACATTGGGTCCAAAGAAAGGAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACAGTAGAAACCATCAACAACATTGGGTCCAAAGAAAGGAAGTGG  50

seq1  GAGTAAGAGGGAGATCTGCACAATGGAGTGGACAAAGTTTCCCACCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAGGGAGATCTGCACAATGGAGTGGACAAAGTTTCCCACCAGGA  100

seq1  AGCCACAATGTGGGCTCTGGCACCGCCTACTACTCATGATGCTCACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAATGTGGGCTCTGGCACCGCCTACTACTCATGATGCTCACATAT  150

seq1  TGTAGGGGCTTGGAGATGGCCATGTATTGATCAAATGTCATCACAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGCTTGGAGATGGCCATGTATTGATCAAATGTCATCACAGAGAG  200

seq1  AGAAAAAATGGGGGTGTGGAGGAGGCACTCTCAGGTTGCCGTGACCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATGGGGGTGTGGAGGAGGCACTCTCAGGTTGCCGTGACCATGA  250

seq1  TGAGGAGGCTGCCCAGCCCAGTTGCTGTGTACACCAAGAAGAGAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGCTGCCCAGCCCAGTTGCTGTGTACACCAAGAAGAGAAAAGAA  300

seq1  GACCAAACTCAGCTCTTGGGACTGTGTCCGTCAGTCCTTCACAAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAACTCAGCTCTTGGGACTGTGTCCGTCAGTCCTTCACAAACAAAT  350

seq1  TCTTTCACCCTGCTGTAGCTGACGTTCTGCTCCATTGCCTCCTGGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCCTGCTGTAGCTGACGTTCTGCTCCATTGCCTCCTGGTTCCT  400

seq1  CTACTTCCTGCGGAGGAAATACTTTTGTTATGGAAAAGTACAACATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCTGCGGAGGAAATACTTTTGTTATGGAAAAGTACAACATCAAA  450

seq1  AACAAAAGGAACGCACTTTGGGTATTGTACTTTAAAACTTTATCACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGGAACGCACTTTGGGTATTGTACTTTAAAACTTTATCACATTT  500

seq1  ATTAGGTGTGTGCACATGTGTGTGTCCTTGCATGCCACAACATACTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTGTGTGCACATGTGTGTGTCCTTGCATGCCACAACATACTCCTG  550

seq1  GAGGCCTATGGGAGTGAATTC  571
      |||||||||||||||||||||
seq2  GAGGCCTATGGGAGTGAATTC  571