BAC Information

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BAC

Clone NameB6Ng01-173E18
Chromosome19 (Build37)
Map Location 34,166,806 - 34,167,777
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn
Downstream geneAnkrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173E18.bB6Ng01-173E18.g
ACCGA001678GA001679
length1,192970
definitionB6Ng01-173E18.b B6Ng01-173E18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaggcaatctacagcaaacca
atagccaacatcaaagtaaatggtgaaaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactattgccctacctattcaacattg
tacttgaagtcctagccagagcaattagacaacaaaagagatcaagggga
tacaaattgcaaaggaagaagtcaaaatatcactttttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaagcct
gataaacagcttcaatgaagtagctggatataaaattaactcaaacaagt
caatggcctttctctacacaaagaataaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaatatctcggagt
gactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctc
tgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgc
tcatggattggcaggatgaacattgtaaaaatggctatcttgccaaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcaattcttca
acgaattagaaagggcaatcagttgattcatctggaataacaaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
tcatgccggacctaaaactgtactacagaacaattgtgatcaaaactgcc
tggtactggtatcgtgacagacaagtagagcaatggaacagaattgaaga
cccagagatgaatccacacacctatggtcacttgatctttgacaagggag
ctaaaatcatacagtggaaaaaagacagcattttcaacaaatggtgctgg
cacaactggcggttatcatgtagaagatgcgaattgatccatttctatct
cctgtactaaggtcaaatcaagtgatagggactctcataaacagagacac
ctgaaactatagagagaagtaggaaagcctcgaggattgggttacaggga
aaatctgaatgacagccaatggcttggctgtaatcagatgaatgaacctc
taaattgcaagcttcttgacaagccaagaacacccgtctcat
gaattccttaaatggatgtaaatatccctagaaaaatgattcatcactct
tacatccccttaaggaatttttgccagctcaagagccccagttccttccc
tcttctccctctggtgcacagtcagttcaagatggagatgagaagtcttt
cctacctatctcacatagaaaaacaattaaatatagtttttctagttttc
taaaacaggccaccatttctttactacatcctccacttatatatgtaatt
cattcatatcaaaaatatccactgtaatataattttacaactgtaatggt
taattcaggaatatgctcacaaaatttccatatttgtagtcaagaaacat
attgcagaagccattatggttagcagaaaactgtcaaaggaaaatggcaa
gaaactgaaaaacctcacgaatagccaaattgaagaaaatggttacacag
agatggtacggtctaggagctggaggaagtacaggcacaacctaccttga
tacagagtccatctgctcctgaaggcctggctcaggaatggagtcttctg
tagtacagaaggagaggtgaagaggaagccggacattgggtgtgcagagc
ttccttttagtcatccatgccgtagcaaccagcttcacttcctcaagcta
aaattcctacccacaggctttgatctatgggtactattatttgtggctgc
caagagggttcactgagcagtgttcaatttttgtgtatagggtgttccac
cgaggctgcactgatatctgattactcagctttcctatactgtgacaaaa
tgcccgaggtaatcaactttcaaaaagataaaagctcagttttggaactt
tcagcattggttgacttcatggctctggaattgtgaattatattatggta
ggaattgtgaattatatatggtaggaatgtgtaaaggattctcttatctc
acacatctgggaaacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34166806_34167777
seq2: B6Ng01-173E18.g_68_1037 (reverse)

seq1  TCTCTGTTTCCCAGATGTGTGAGATAAGAGAATCCTTTACACATTCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTCCCAGATGTGTGAGATAAGAGAATCCTTTACACATTCCTAC  50

seq1  CATAATATAATTCACAATTCCTACCATAATATAATTCACAATTCCAGAGC  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-ATATAATTCACAATTCCTACCATAATATAATTCACAATTCCAGAGC  99

seq1  CATGAAGTCAACCAATGCTGAAAGTTCCAAAACCTGAGCTTTTATCTTTT  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGAAGTCAACCAATGCTGAAAGTTCCAAAA-CTGAGCTTTTATCTTTT  148

seq1  TGAAAGTTGATTACCTCGGGCATTTTGTCACAGTATAGGAAAGCTGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTGATTACCTCGGGCATTTTGTCACAGTATAGGAAAGCTGAGTA  198

seq1  ATCAGATATCAGTGCAGCCTCGGTGGAACACCCTATACACAAAAATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATCAGTGCAGCCTCGGTGGAACACCCTATACACAAAAATTGAA  248

seq1  CACTGCTCAGTGAACCCTCTTGGCAGCCACAAATAATAGTACCCATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCAGTGAACCCTCTTGGCAGCCACAAATAATAGTACCCATAGAT  298

seq1  CAAAGCCTGTGGGTAGGAATTTTAGCTTGAGGAAGTGAAGCTGGTTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTGTGGGTAGGAATTTTAGCTTGAGGAAGTGAAGCTGGTTGCTA  348

seq1  CGGCATGGATGACTAAAAGGAAGCTCTGCACACCCAATGTCCGGCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATGGATGACTAAAAGGAAGCTCTGCACACCCAATGTCCGGCTTCCT  398

seq1  CTTCACCTCTCCTTCTGTACTACAGAAGACTCCATTCCTGAGCCAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTCTCCTTCTGTACTACAGAAGACTCCATTCCTGAGCCAGGCCT  448

seq1  TCAGGAGCAGATGGACTCTGTATCAAGGTAGGTTGTGCCTGTACTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCAGATGGACTCTGTATCAAGGTAGGTTGTGCCTGTACTTCCTC  498

seq1  CAGCTCCTAGACCGTACCATCTCTGTGTAACCATTTTCTTCAATTTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTAGACCGTACCATCTCTGTGTAACCATTTTCTTCAATTTGGCT  548

seq1  ATTCGTGAGGTTTTTCAGTTTCTTGCCATTTTCCTTTGACAGTTTTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGAGGTTTTTCAGTTTCTTGCCATTTTCCTTTGACAGTTTTCTGC  598

seq1  TAACCATAATGGCTTCTGCAATATGTTTCTTGACTACAAATATGGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATAATGGCTTCTGCAATATGTTTCTTGACTACAAATATGGAAATT  648

seq1  TTGTGAGCATATTCCTGAATTAACCATTACAGTTGTAAAATTATATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCATATTCCTGAATTAACCATTACAGTTGTAAAATTATATTACA  698

seq1  GTGGATATTTTTGATATGAATGAATTACATATATAAGTGGAGGATGTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATTTTTGATATGAATGAATTACATATATAAGTGGAGGATGTAGT  748

seq1  AAAGAAATGGTGGCCTGTTTTAGAAAACTAGAAAAACTATATTTAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGGTGGCCTGTTTTAGAAAACTAGAAAAACTATATTTAATTGT  798

seq1  TTTTCTATGTGAGATAGGTAGGAAAGACTTCTCATCTCCATCTTGAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGTGAGATAGGTAGGAAAGACTTCTCATCTCCATCTTGAACTG  848

seq1  ACTGTGCACCAGAGGGAGAAGAGGGAAGGAACTGGGGCTCTTGAGCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCACCAGAGGGAGAAGAGGGAAGGAACTGGGGCTCTTGAGCTGGC  898

seq1  AAAAATTCCTTAAGGGGATGTAAGAGTGATGAATCATTTTTCTAGGGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCCTTAAGGGGATGTAAGAGTGATGAATCATTTTTCTAGGGATA  948

seq1  TTTACATCCATTTAAGGAATTC  972
      ||||||||||||||||||||||
seq2  TTTACATCCATTTAAGGAATTC  970