BAC Information

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BAC

Clone NameB6Ng01-173H10
Chromosome19 (Build37)
Map Location 5,275,867 - 5,395,067
singlet/doubletdoublet
Overlap geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip
Upstream geneAnkrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1
Downstream geneEG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H10.bB6Ng01-173H10.g
ACCGA001802GA001803
length1,1541,226
definitionB6Ng01-173H10.b B6Ng01-173H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,393,917 - 5,395,067)(5,275,867 - 5,277,097)
sequence
gaattctttcactttttaactctttcctacacatttatccatccaactga
tggtcggtccatacgaacgtgccccaggctgctaggcattaacctagctg
ctgtcaagtaaagtggttagagatctagccctttctcaaagacagcttgc
tggaagggaatgtgagcaattcaaagggttccaggctgtgcgctgagccc
tcagggctcgggagtcctggggcaagtgttaagaactggctgtcagctgg
gaggcagtgaggcagtggcacgtgccattaatcccagcactcaagaggca
gaagaaggtgaatctctgagttccaggacagcctgggctacacagagaaa
ctctgtgtcaaataaacaaacaaaccaaaccaaactaaccaaacaaccaa
agaagtggatctccctgctgcagagtaagtagggagaggtctcaggcggc
tgctccataaagcctggcttctgtgacaaacgccatttgtttcccaggac
ttgggctctcagagacagacttctccccacagtccctcacctctggatta
catgcccctctatgctaccgtggtcttcctgatcccggacggacatcctc
cttttatcaccaggaacctgctccgggcctgggaacagcagcaggtgaag
gagaggcagcaggccgaggtgcgcagagcccgggagcagcaggtgcagca
gcaggtggctcgctgcctggcagcctacacatccggagggaacagaggga
ccctggcacctcagcgcaaactagaggagctaaggtaggaagcccaggct
ttgctgggcaaggtagaactacaaaagaagaactaagacccagagaacag
aaagctttaaatgatttgccaacatctgaagtcagccatgacagttgtta
cctgccacactggctcatgtgttagtgcttgtgcttcagtgaaaggacca
catggcagttcctgaaatggctcaacttttacgacatagatagtatgatt
aagtacagtcatttaagccgttaacgtgagccgggccctggtggcaaaca
cccagcacttggagacagagcaggtggatcttttgttcgagggccagtct
ggtttacgagttgagttcaagacaggccaggcctatgccatagaaatcct
gtct
gaattccaggacaggcagatctatataggaagatgatctcaaaaaaacaa
atagtagaggtgtttcacaccattaagcacaacactttgtatgtagacag
aggcaggagaatctatgagttcgaggccagcctggtctacagagtgagtt
tcaggacagccaaggctacacagagaaaccctgtctcaaaaaacaatcaa
aaacaaagttacctcttcgatgggaagagttagagagcacatggtctaga
gtggtagtaatgagcttgccatttgaccttgactgtgctagtctatgcat
aattgaaatcagtggttgaaggccctttttctttgggagggctagaacat
tagaacttcaggcactacctctgagaatgtctattttattcatttatttt
tactctttggttttggttctgattccctaatttgggacagcactgcttta
gagcccttgtctttaaagtttaccaaaaaaattaaaaataaaataagata
aaataaaataaaaatgaaccttacaatggtactgagtttccaggccacag
accagaggatacccatacagagctgagaggattctgtgaattgagaatca
gggtcaaaatctaagaagagcaatgctttcagagtctgcaggacacagag
agagctcaagagctccttcttcaagcattgggggagaagagcgaggaaac
atgcatgtgagaattcccaacaccaagcagttcctggaaggatgagcaac
gacagcagccactgttcagccaagatgcaaaacagcaccaagtcccactg
atcaaatggaaaaccctccaaattcacagggcttgggggtgagaacagag
tctcctgagcactgccccctagtgaggaggactattttcagtcctactaa
gaaaaccaaaaaaccaagtttcagaatatcaaactgttttctaaacaccc
attaatagtagtcaaagggtaaagatgggggaggaattataaatgcttct
aacccagtaaatttcacaaagctaaactgccttatcaggagctatcagca
catgtgaggcatatgatgcacatctatatttacccgagatataaagctgg
aaataggaccgggcggtggtggcgcaacctttgtatcctagacctgtgag
cagagccagcggattccggattcaagcagctgctcagagtgagttcagga
cagccagggctacctcagagtaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5393917_5395067
seq2: B6Ng01-173H10.b_33_1186 (reverse)

seq1  AGACAGGATTTCTCT-GCATAGCCCTGG-CTGTCCTGAAACTC-ACTCTG  47
      ||||||||||||| | |||||| ||||| ||||| || ||||| |||| |
seq2  AGACAGGATTTCTATGGCATAGGCCTGGCCTGTCTTG-AACTCAACTC-G  48

seq1  TAGACCAGACTGG-CCTCGAAC-AAAGATCCACCTGCCTCTGTCTTCCAA  95
      || |||||||||| |||||||| ||||||||||||| ||||||| |||||
seq2  TAAACCAGACTGGCCCTCGAACAAAAGATCCACCTG-CTCTGTC-TCCAA  96

seq1  GTGCTGGGTGTTTGCCACCAGGCCCGGCCTCACGTTAACGGCTTAAATGA  145
      |||||||||||||||||||||| || | ||||||||||||||||||||||
seq2  GTGCTGGGTGTTTGCCACCAGGGCCCGGCTCACGTTAACGGCTTAAATGA  146

seq1  CTGTACTTAATCATACTATCTATGTCGT-AAAGTTGAGCCATTTCAGGGA  194
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CTGTACTTAATCATACTATCTATGTCGTAAAAGTTGAGCCATTTCAGGAA  196

seq1  CTGCCATGT-GTCCTTTCACTGAAGCACAAGCACTAACACATTGAGCCAG  243
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CTGCCATGTGGTCCTTTCACTGAAGCACAAGCACTAACACA-TGAGCCAG  245

seq1  TGTGGCAGGTAACAACTGTCATGGCTGACTTCAGATGTTGGCAAATCATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGGTAACAACTGTCATGGCTGACTTCAGATGTTGGCAAATCATT  295

seq1  T-AAGCTTTCTGTTCTCTGGGTCTTAGTTCTTCTTTTGTAGTTCTACCTT  342
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTCTGTTCTCTGGGTCTTAGTTCTTCTTTTGTAGTTCTACCTT  345

seq1  GCCCAGCAAAGCCT-GGCTTCCTACCTTAGCTCCTCTAGTTTGCGCTGAG  391
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAAAGCCTGGGCTTCCTACCTTAGCTCCTCTAGTTTGCGCTGAG  395

seq1  GTGCCAGGGTCCCTCTGTTCCCTCCGGATGTGTAGGCTGCCAGGCAGCGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGGTCCCTCTGTTCCCTCCGGATGTGTAGGCTGCCAGGCAGCGA  445

seq1  GCCACCTGCTGCTGCACCTGCTGCTCCCGGGCTCTGCGCACCTCGGCCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGCTGCTGCACCTGCTGCTCCCGGGCTCTGCGCACCTCGGCCTG  495

seq1  CTGCCTCTCCTTCACCTGCTGCTGTTCCCAGGCCCGGAGCAGGTTCCTGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTCCTTCACCTGCTGCTGTTCCCAGGCCCGGAGCAGGTTCCTGG  545

seq1  TGATAAAAGGAGGATGTCCGTCCGGGATCAGGAAGACCACGGTAGCATAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGGAGGATGTCCGTCCGGGATCAGGAAGACCACGGTAGCATAG  595

seq1  AGGGGCATGTAATCCAGAGGTGAGGGACTGTGGGGAGAAGTCTGTCTCTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATGTAATCCAGAGGTGAGGGACTGTGGGGAGAAGTCTGTCTCTG  645

seq1  AGAGCCCAAGTCCTGGGAAACAAATGGCGTTTGTCACAGAAGCCAGGCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAAGTCCTGGGAAACAAATGGCGTTTGTCACAGAAGCCAGGCTT  695

seq1  TATGGAGCAGCCGCCTGAGACCTCTCCCTACTTACTCTGCAGCAGGGAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCAGCCGCCTGAGACCTCTCCCTACTTACTCTGCAGCAGGGAGA  745

seq1  TCCACTTCTTTGGTTGTTTGGTTAGTTTGGTTTGGTTTGTTTGTTTATTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTTTGGTTGTTTGGTTAGTTTGGTTTGGTTTGTTTGTTTATTT  795

seq1  GACACAGAGTTTCTCTGTGTAGCCCAGGCTGTCCTGGAACTCAGAGATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGTTTCTCTGTGTAGCCCAGGCTGTCCTGGAACTCAGAGATTC  845

seq1  ACCTTCTTCTGCCTCTTGAGTGCTGGGATTAATGGCACGTGCCACTGCCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTCTGCCTCTTGAGTGCTGGGATTAATGGCACGTGCCACTGCCT  895

seq1  CACTGCCTCCCAGCTGACAGCCAGTTCTTAACACTTGCCCCAGGACTCCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTCCCAGCTGACAGCCAGTTCTTAACACTTGCCCCAGGACTCCC  945

seq1  GAGCCCTGAGGGCTCAGCGCACAGCCTGGAACCCTTTGAATTGCTCACAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGAGGGCTCAGCGCACAGCCTGGAACCCTTTGAATTGCTCACAT  995

seq1  TCCCTTCCAGCAAGCTGTCTTTGAGAAAGGGCTAGATCTCTAACCACTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCAGCAAGCTGTCTTTGAGAAAGGGCTAGATCTCTAACCACTTT  1045

seq1  ACTTGACAGCAGCTAGGTTAATGCCTAGCAGCCTGGGGCACGTTCGTATG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACAGCAGCTAGGTTAATGCCTAGCAGCCTGGGGCACGTTCGTATG  1095

seq1  GACCGACCATCAGTTGGATGGATAAATGTGTAGGAAAGAGTTAAAAAGTT  1141
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACCGACCATCAGTTGGATGGATAAATGTGTAGGAAAGAGTTAAAAAG-T  1144

seq1  GAAAGAATTC  1151
      ||||||||||
seq2  GAAAGAATTC  1154

seq1: chr19_5275867_5277097
seq2: B6Ng01-173H10.g_66_1291

seq1  GAATTCCAGGACAGGCAGATCTATATAGGAAGATGATCTCAAAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGCAGATCTATATAGGAAGATGATCTCAAAAAAACAA  50

seq1  ATAGTAGAGGTGTTTCACACCATTAAGCACAACACTTTGTATGTAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAGGTGTTTCACACCATTAAGCACAACACTTTGTATGTAGACAG  100

seq1  AGGCAGGAGAATCTATGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAATCTATGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT  150

seq1  TCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAACAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAACAATCAA  200

seq1  AAACAAAGTTACCTCTTCGATGGGAAGAGTTAGAGAGCACATGGTCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTTACCTCTTCGATGGGAAGAGTTAGAGAGCACATGGTCTAGA  250

seq1  GTGGTAGTAATGAGCTTGCCATTTGACCTTGACTGTGCTAGTCTATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTAATGAGCTTGCCATTTGACCTTGACTGTGCTAGTCTATGCAT  300

seq1  AATTGAAATCAGTGGTTGAAGGCCCTTTTTCTTTGGGAGGGCTAGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATCAGTGGTTGAAGGCCCTTTTTCTTTGGGAGGGCTAGAACAT  350

seq1  TAGAACTTCAGGCACTACCTCTGAGAATGTCTATTTTATTCATTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTCAGGCACTACCTCTGAGAATGTCTATTTTATTCATTTATTTT  400

seq1  TACTCTTTGGTTTTGGTTCTGATTCCCTAATTTGGGACAGCACTGCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTGGTTTTGGTTCTGATTCCCTAATTTGGGACAGCACTGCTTTA  450

seq1  GAGCCCTTGTCTTTAAAGTTTACCAAAAAAATTAAAAATAAAATAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTGTCTTTAAAGTTTACCAAAAAAATTAAAAATAAAATAAGATA  500

seq1  AAATAAAATAAAAATGAACCTTACAATGGTACTGAGTTTCCAGGCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAAAATGAACCTTACAATGGTACTGAGTTTCCAGGCCACAG  550

seq1  ACCAGAGGATACCCATACAGAGCTGAGAGGATTCTGTGAATTGAGAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGATACCCATACAGAGCTGAGAGGATTCTGTGAATTGAGAATCA  600

seq1  GGGTCAAAATCTAAGAAGAGCAATGCTTTCAGAGTCTGCAGGACACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAAATCTAAGAAGAGCAATGCTTTCAGAGTCTGCAGGACACAGAG  650

seq1  AGAGCTCAAGAGCTCCTTCTTCAAGCATTGGGGGAGAAGAGCGAGGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAAGAGCTCCTTCTTCAAGCATTGGGGGAGAAGAGCGAGGAAAC  700

seq1  ATGCATGTGAGAATTCCCAACACCAAGCAGTTCCTGGAAGGATGAGCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGAGAATTCCCAACACCAAGCAGTTCCTGGAAGGATGAGCAAC  750

seq1  GACAGCAGCCACTGTTCAGCCAAGATGCAAAACAGCACCAAGTCCCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCCACTGTTCAGCCAAGATGCAAAACAGCACCAAGTCCCACTG  800

seq1  ATCAAATGGAAAACCCTCCAAATTCACAGGGCTTGGGGGTGAGAACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGGAAAACCCTCCAAATTCACAGGGCTTGGGGGTGAGAACAGAG  850

seq1  TCTCCTGAGCACTGCCCCCTAGTGAGGAGGACTA-TTTCAGTCCTACTAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTCCTGAGCACTGCCCCCTAGTGAGGAGGACTATTTTCAGTCCTACTAA  900

seq1  GAAAACCAAAAAACCAAGTTTCAGAATATCAAACTG-TTTCTAAACAACC  948
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GAAAACCAAAAAACCAAGTTTCAGAATATCAAACTGTTTTCTAAACACCC  950

seq1  ATTAATAGTAGTCAAA-GGTAAAGAT-GGGGAGGAATATAAAATGC-TCT  995
      |||||||||||||||| ||||||||| ||||||||||   |||||| |||
seq2  ATTAATAGTAGTCAAAGGGTAAAGATGGGGGAGGAATTATAAATGCTTCT  1000

seq1  AACCCAGTAAATTTCACAAAGCTAAACTGCC-TATCAGGAGCTATCAGGC  1044
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AACCCAGTAAATTTCACAAAGCTAAACTGCCTTATCAGGAGCTATCA-GC  1049

seq1  ACATGTGAGGCATAGTGATGCACATCTATATTTAACCCGAGATATAAAAG  1094
      |||||||||||||| |||||||||||||||||| ||||||||||| ||||
seq2  ACATGTGAGGCATA-TGATGCACATCTATATTT-ACCCGAGATAT-AAAG  1096

seq1  CT-GAGATAGGACC-GGCGGTGGTGGCGCACACCTTTG-ATCCTAGCACT  1141
      || || |||||||| ||||||||||||||| ||||||| ||||||| || 
seq2  CTGGAAATAGGACCGGGCGGTGGTGGCGCA-ACCTTTGTATCCTAG-ACC  1144

seq1  TGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAC  1191
      || || |||||| || ||||||| | || ||||||  ||| ||| |   |
seq2  TGTGA-GCAGAGCCA-GCGGATTCCGGA-TTCAAG--CAG-CTGCT---C  1185

seq1  AGAGTGAGTTCCAGGACAGCCAGGGCTA-CACAGAG-AAACC  1231
      |||||||||| ||||||||||||||||| | ||||| |||||
seq2  AGAGTGAGTT-CAGGACAGCCAGGGCTACCTCAGAGTAAACC  1226