BAC Information

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BAC

Clone NameB6Ng01-174K17
Chromosome19 (Build37)
Map Location 16,934,223 - 16,935,311
singlet/doubletsinglet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174K17.g
ACCGA002686
length1,109
definitionB6Ng01-174K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gttgctagtcagttttgcttttattggaaacagggtatgatctatgcatc
ctctgcttctttttttttttggcttttcgaggcagggtttttctgtgtag
ccctggctgtcctggaactcactttgtagaccaggctggcctcgaactca
gaaatctacctgcctctgcctcccaagtactgggattaaaggtatgcgcc
accatgcccagcacatcctctgctcttaacacacatagtaatttctttac
ataatggggactcgggcattatcactattcaatttgaattttttttaaaa
atgtgatttatatttcaagagcacagctcctgaggcaaataaaattcttc
tcacggtactgttaaaaaggatgtcctaaagaatttgaggaaaggcacct
tctccatttgaaaacagtagaagatgacgctgtgtcttcaccttaacttt
taagtgaacagacctgaattatttgagtatatttcataagtctcttgaga
ataaaatcacctcctacatagtattttgaaagttagaggaaatacctgat
tgcagaaattgacacttagtttcagtgactgagaatcaactctttcacta
acagagagagagagagagagagagagagagagagagagagagagagagag
acagagagagacagcgagagagacagagtgagagaaagcgagagagtgag
agctagagagagacagagattgttcctaaaggtgtgtgtgtgtccttcat
cataaaagagagctttttgtggtcgaatcccttagctgcttctcttgact
accttctagtctttcctgtcttgtgtattgttaactacataaaccctgca
tcttttcatgggggaatgggtgaacagtcctctactgcatcttcctttcc
cagctgtcccttgacacatcaaattcctcagggaagggacccaagggctc
tcaaagccccatagcattgtcaggcatcaagaaggtcctgtcccctccac
cccaccacctgtcctttaggaattgttaatatagttttacatgtcaagat
ctaaaacatcaagagacccgcccttctgggtgttgtctgtcattttccag
attagatta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16934223_16935311
seq2: B6Ng01-174K17.g_78_1186

seq1  GTTGCTAGTCAGTTTTGCTTTTATTGGAAACAGGGTATGATCTATGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGTCAGTTTTGCTTTTATTGGAAACAGGGTATGATCTATGCATC  50

seq1  CTCTGCTTCTTTTTTTTTTTGGCTTTTCGAGGCAGGGTTTTTCTGTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCTTTTTTTTTTTGGCTTTTCGAGGCAGGGTTTTTCTGTGTAG  100

seq1  CCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCA  150

seq1  GAAATCTACCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGTATGCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTACCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGTATGCGCC  200

seq1  ACCATGCCCAGCACATCCTCTGCTCTTAACACACATAGTAATTTCTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCCAGCACATCCTCTGCTCTTAACACACATAGTAATTTCTTTAC  250

seq1  ATAATGGGGACTCGGGCATTATCACTATTCAATTTGAATTTTTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGGACTCGGGCATTATCACTATTCAATTTGAATTTTTTTTAAAA  300

seq1  ATGTGATTTATATTTCAAGAGCACAGCTCCTGAGGCAAATAAAATTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTATATTTCAAGAGCACAGCTCCTGAGGCAAATAAAATTCTTC  350

seq1  TCACGGTACTGTTAAAAAGGATGTCCTAAAGAATTTGAGGAAAGGCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGTACTGTTAAAAAGGATGTCCTAAAGAATTTGAGGAAAGGCACCT  400

seq1  TCTCCATTTGAAAACAGTAGAAGATGACGCTGTGTCTTCACCTTAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTGAAAACAGTAGAAGATGACGCTGTGTCTTCACCTTAACTTT  450

seq1  TAAGTGAACAGACCTGAATTATTTGAGTATATTTCATAAGTCTCTTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAACAGACCTGAATTATTTGAGTATATTTCATAAGTCTCTTGAGA  500

seq1  ATAAAATCACCTCCTACATAGTATTTTGAAAGTTAGAGGAAATACCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCACCTCCTACATAGTATTTTGAAAGTTAGAGGAAATACCTGAT  550

seq1  TGCAGAAATTGACACTTAGTTTCAGTGACTGAGAATCAACTCTTTCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATTGACACTTAGTTTCAGTGACTGAGAATCAACTCTTTCACTA  600

seq1  ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650

seq1  ACAGAGAGAGACAGCGAGAGAGACAGAGTGAGAGAAAGCGAGAGAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGACAGCGAGAGAGACAGAGTGAGAGAAAGCGAGAGAGTGAG  700

seq1  AGCTAGAGAGAGACAGAGATTGTTCCTAAAGGTGTGTGTGTGTCCTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAGAGACAGAGATTGTTCCTAAAGGTGTGTGTGTGTCCTTCAT  750

seq1  CATAAAAGAGAGCTTTTTGTGGTCGAATTCCTTAGCTGCTTCTCTTGACT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATAAAAGAGAGCTTTTTGTGGTCGAATCCCTTAGCTGCTTCTCTTGACT  800

seq1  ACCTTCTAGTCTTTCCTGTCTTGTGTATTGTTAACTACATAAA-CCTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTTCTAGTCTTTCCTGTCTTGTGTATTGTTAACTACATAAACCCTGCA  850

seq1  TCTTTTCAT-GGGGAATGGGTGAACAGTCCTCTACTGCATCTTCC-TTCC  897
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTTTCATGGGGGAATGGGTGAACAGTCCTCTACTGCATCTTCCTTTCC  900

seq1  CAGCTGT-CCTTGACACATCAA--TCCTCAGGG-AGGGACCCAA-GGCTC  942
      ||||||| ||||||||||||||  ||||||||| |||||||||| |||||
seq2  CAGCTGTCCCTTGACACATCAAATTCCTCAGGGAAGGGACCCAAGGGCTC  950

seq1  TCAA--GCCCATAGCATTGTCA-GCATC-AGA--GTTCTGTCCCCT-CAC  985
      ||||   ||||||||||||||| ||||| |||  || ||||||||| |||
seq2  TCAAAGCCCCATAGCATTGTCAGGCATCAAGAAGGTCCTGTCCCCTCCAC  1000

seq1  CCCA-CACCTGTCACTTAGG-ATTGTTAATA-ATGTTTACATGTCAGGAT  1032
      |||| ||||||||  ||||| |||||||||| |  ||||||||||| |||
seq2  CCCACCACCTGTCCTTTAGGAATTGTTAATATAGTTTTACATGTCAAGAT  1050

seq1  CCACAACATCAAAGAGACCCGCC--TCTGGGTG-TGTCTGTCATTTTCCA  1079
      | | |||||| ||||||||||||  |||||||| ||||||||||||||||
seq2  CTAAAACATC-AAGAGACCCGCCCTTCTGGGTGTTGTCTGTCATTTTCCA  1099

seq1  GATTAGATTA  1089
      ||||||||||
seq2  GATTAGATTA  1109