BAC Information

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BAC

Clone NameB6Ng01-175I23
Chromosome19 (Build37)
Map Location 33,240,684 - 33,241,725
singlet/doubletsinglet
Overlap gene6530404N21Rik
Upstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I23.bB6Ng01-175I23.g
ACCGA003331GA003332
length1,1741,054
definitionB6Ng01-175I23.b B6Ng01-175I23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagaaataccgaatggctgagaaatgcctgaaaaaatg
ttcagcatccttaatcataagggaaatgcaaatcaaaacaaccctgaggt
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgcttgtgaggatgtggagaaagaggaacactcctccattgctggta
ggattgcaagcttgtacaaccactctggatatcagtctgacggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaataaggacacatgctccactat
gttcatagcagccttatttataataaccagaagctgggaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccaggaac
ttagtatacccgagatataagatacaatttgcaaaacacatgaaactgaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacaaagacaaagttttgagctgagacaa
aaggatggaccatctagagactgccatatccagggatccattccataatt
agcctccaaacgatgacaccattgcatacactagcaagcgtttgctgaaa
ggaccctgatatagctgtctcttgtgagactaggcctgggcctagcaaac
acataagtggatgctcacagacagctattggatggatcacagggccccca
aatggaggagctagagaacgtatccaaggagctaaagagatctgcaaccc
tgtagtgcaacattatgactaacagtacccagagctctgactctagctgc
atatgtatcaagatggcctagtcgcaatcactgcaaggagaggccaatgg
gacaccaaactttatatgtctcagtcatggaacgcaggtcaaagtgggaa
tggttctgtgaagggtatcatctc
gaattcacaccatatagcactgtttggaacagaatattagctctgtgtct
tattgaaacttccataatataaaggcatttagcgctctggctttttattt
ttcagagaaagagcagaaaaggaatggggcagtatatggagaccagaagg
aagagaagggaggagagacagaaggcagctgctgtgggacctgggctgga
cagaggttcagctgggtttcctccttaagagcacagtctctgctcagaat
tggggagttgggagcactgaaaatatagcccctgctcctcttcctgtcct
gcctctcatgtatatcaccttcttatcagttcactgctgcattatatcca
acagtcacacaaatgcaccttgattaattgagacaaggccatggtggcaa
ggcatggggcacacccttccccatcaagttccaaaggttaagatggacca
ctgaaaagtgtgggggatttactgttgaggaggttatgtgaaactaagaa
ccttatctcaagccacttgaccttcctttggtcagtcccttttctaatgt
gtatcaaggggtgagttgtcaccacgaatgacagtgttactcttgtagac
tgatgctcaaggtgctagagaagtgtgtgaacagtgtgaaatgcttgttt
tgaagctttgacaatagcttgtctcctttcaggctctgcagcaagtgtag
catctatgtctacagaattataaatgcagtggaatgatttcaacatccaa
attgcaataaaaaccattgttagagtttggctatacattgtactcaaaat
aattcttttggtgaaactttgtgatattgtttcatcaatatttgaaatag
gtaggttcatggttaggacaagactattcttacatttatataaaattgta
agacttatataatgagtagatttaaatttatatgtgagtagggtttaaca
ttattttttagtctatattaactttagttatgagaaaacttacactacta
cactcacgacactcacaaaattgttaacgaaatttactggatcttttaaa
gaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_33240684_33241725
seq2: B6Ng01-175I23.g_60_1113

seq1  GAATTCACACCATATAGCACTGTTTGGAACAGAATATTAGCTCTGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCATATAGCACTGTTTGGAACAGAATATTAGCTCTGTGTCT  50

seq1  TATTGAAACTTCCATAATATAAAGGCATTTAGCGCTCTGGCTTTTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAACTTCCATAATATAAAGGCATTTAGCGCTCTGGCTTTTTATTT  100

seq1  TTCAGAGAAAGAGCAGAAAAGGAATGGGGCAGTATATGGAGACCAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAAGAGCAGAAAAGGAATGGGGCAGTATATGGAGACCAGAAGG  150

seq1  AAGAGAAGGGAGGAGAGACAGAAGGCAGCTGCTGTGGGACCTGGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGGAGGAGAGACAGAAGGCAGCTGCTGTGGGACCTGGGCTGGA  200

seq1  CAGAGGTTCAGCTGGGTTTCCTCCTTAAGAGCACAGTCTCTGCTCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCAGCTGGGTTTCCTCCTTAAGAGCACAGTCTCTGCTCAGAAT  250

seq1  TGGGGAGTTGGGAGCACTGAAAATATAGCCCCTGCTCCTCTTCCTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTTGGGAGCACTGAAAATATAGCCCCTGCTCCTCTTCCTGTCCT  300

seq1  GCCTCTCATGTATATCACCTTCTTATCAGTTCACTGCTGCATTATATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCATGTATATCACCTTCTTATCAGTTCACTGCTGCATTATATCCA  350

seq1  ACAGTCACACAAATGCACCTTGATTAATTGAGACAAGGCCATGGTGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACACAAATGCACCTTGATTAATTGAGACAAGGCCATGGTGGCAA  400

seq1  GGCATGGGGCACACCCTTCCCCATCAAGTTCCAAAGGTTAAGATGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGGCACACCCTTCCCCATCAAGTTCCAAAGGTTAAGATGGACCA  450

seq1  CTGAAAAGTGTGGGGGATTTACTGTTGAGGAGGTTATGTGAAACTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTGTGGGGGATTTACTGTTGAGGAGGTTATGTGAAACTAAGAA  500

seq1  CCTTATCTCAAGCCACTTGACCTTCCTTTGGTCAGTCCCTTTTCTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTCAAGCCACTTGACCTTCCTTTGGTCAGTCCCTTTTCTAATGT  550

seq1  GTATCAAGGGGTGAGTTGTCACCACGAATGACAGTGTTACTCTTGTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGGGGTGAGTTGTCACCACGAATGACAGTGTTACTCTTGTAGAC  600

seq1  TGATGCTCAAGGTGCTAGAGAAGTGTGTGAACAGTGTGAAATGCTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCAAGGTGCTAGAGAAGTGTGTGAACAGTGTGAAATGCTTGTTT  650

seq1  TGAAGCTTTGACAATAGCTTGTCTCCTTTCAGGCTCTGCAGCAAGTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTTGACAATAGCTTGTCTCCTTTCAGGCTCTGCAGCAAGTGTAG  700

seq1  CATCTATGTCTACAGAATTATAAATGCAGTGGAATGATTTCAACATCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGTCTACAGAATTATAAATGCAGTGGAATGATTTCAACATCCAA  750

seq1  ATTGCAATAAAAACCATTGTTAGAGTTTGGCTATACATTGTACTCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATAAAAACCATTGTTAGAGTTTGGCTATACATTGTACTCAAAAT  800

seq1  AA-TCTTTTGGTGAAACTTTGTGATATTGTTTCATCAATATTTG-AATAG  848
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTCTTTTGGTGAAACTTTGTGATATTGTTTCATCAATATTTGAAATAG  850

seq1  GTAGGTTCATGGTTAGGACAAGACTATTCTTACA-TTATATAAAATTGTA  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAGGTTCATGGTTAGGACAAGACTATTCTTACATTTATATAAAATTGTA  900

seq1  AGACTTATATAATGAGTAGATTTAAATTTATATGTGAGTAGGTTTAAACA  947
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  AGACTTATATAATGAGTAGATTTAAATTTATATGTGAGTAGGGTTTAACA  950

seq1  TTATTTTTTAGTCTAATAGTAACTT--ATTATGAGAAAAACTTACAC---  992
      |||||||||||||| ||| ||||||   ||||||| |||||||||||   
seq2  TTATTTTTTAGTCT-ATATTAACTTTAGTTATGAG-AAAACTTACACTAC  998

seq1  -ACACACAC-ACACACACACAAATGTTA---CAAATTACT-GTTCTTTTA  1036
       |||| ||| |||| |||| || |||||    || ||||| | |||||||
seq2  TACACTCACGACACTCACAAAATTGTTAACGAAATTTACTGGATCTTTTA  1048

seq1  AAGAAG  1042
      ||||||
seq2  AAGAAG  1054