BAC Information

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BAC

Clone NameB6Ng01-175I24
Chromosome19 (Build37)
Map Location 10,781,988 - 10,892,560
singlet/doubletdoublet
Overlap geneVps37c, Cd5, Cd6
Upstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik
Downstream geneSlc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I24.bB6Ng01-175I24.g
ACCGA003333GA003334
length910880
definitionB6Ng01-175I24.b B6Ng01-175I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,781,988 - 10,782,886)(10,891,692 - 10,892,560)
sequence
gaattcactgtgttaaagaacaggcagttgtccagttagcatcccggtca
gcctccctggacccttacccctgcttcatgggtgcacatggtcctgtatc
cacctctgctgtgctttctgctgccacctgctcccccacctgctccccag
ccctgctcaggcgtctctgctggattggagatgacccagggttgggttgg
aaaggcctcctcacggcagggagtaggagaggtctttgtgtgactcacct
tgcagccctgaggttggatggcctggtttcagcagcataggagcaaagtc
acgcacagctgagtgtcccttaccacaggttcctggggtgtaagctttgc
agatttcctacgtcttggcccttgaaatgttttgcatagatttactagtt
agatatccacaatataaaaaaacccacaaattccaagacattctgaaatc
cagaattccctgagtgtcacgtaggctttttgaaatctagaacaagagtg
tcactgatagctgtctctgcatcttagattttgtgttgctggatgtttgc
catttgaactccaagggtctcctctttttattgtgtcctatctctgtgca
cacacatatctgtgcatgaatgccacatcacaagtgtggaggtcaaagga
cagctttcaggagttggttctctcctaccatttggagccaagggttcaaa
ctcaggtcagtcaggcttagcagcaagcatctttgcttactgagccatct
ttttagccctaagtatttcttcagtcaaacagtgagcaacaggatggtaa
ggggttcctagtcttgtccctgaatgtgagtggagctcagcaaaaagcaa
gtcccagctcttggggagtttcattggcttccaaggctgagcaagctttt
cagcctctat
gaattctctagaattctagccttctccctctgagctgctgctgaatttct
gttgcagaaacgagtgtagaggtgggtgatttagtgtcctagggctaagt
gacaaagtcccaaaggcaaggtgtgaaataaataagagataattaattcc
acacagccctggaggtttgaattaaggcccagggtcaagatgtcagctgc
tggggttcttacaaaggtctgtgagggagcgtgtgttccaggtctcctag
ctcctgcaagttggtgtccatcttgggtgctcccttggcctgtaaaagca
ttcctcccaggctggggctggagcaatgtggtagacctgctttgctagca
gtaagtcttagaattgatgcccagcacgaggcatggtggagtacactgtc
accctagcactcaggaagtagaggctctggaggattaagagttcaaggcc
attctcagttccattgagttcaaggtcagcttggactggctgcatgacac
cttgtttcagaaaacaaacagcaaaatactactctgctctctgccttcac
cttaacttagttttttcccctgggcactacatctgtgtggttttatgaag
acaacagtaatattgacttaagacctgatcccacaggtctcattttaagt
tgaagaactctacaaacactttatttttaaataaggctacattctggggt
tttagaagttttagattctaacacttaattgtgatggtaaaaaagtatta
cacacatgcatataccaaaatttaaaagaacataattatgggcacttttg
tgggttaagaataataccctactttttttgttgttagcttccaaaaataa
ctaaaacttcatttatggcatttgaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10781988_10782886
seq2: B6Ng01-175I24.b_40_949

seq1  GAATTCACTGTGTTAAAGAACAGGCAGTTGTCCAGTTAGCATCCCGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTTAAAGAACAGGCAGTTGTCCAGTTAGCATCCCGGTCA  50

seq1  GCCTCCCTGGACCCTTACCCCTGCTTCATGGGTGCACATGGTCCTGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTGGACCCTTACCCCTGCTTCATGGGTGCACATGGTCCTGTATC  100

seq1  CACCTCTGCTGTGCTTTCTGCTGCCACCTGCTCCCCCACCTGCTCCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCTGTGCTTTCTGCTGCCACCTGCTCCCCCACCTGCTCCCCAG  150

seq1  CCCTGCTCAGGCGTCTCTGCTGGATTGGAGATGACCCAGGGTTGGGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCAGGCGTCTCTGCTGGATTGGAGATGACCCAGGGTTGGGTTGG  200

seq1  AAAGGCCTCCTCACGGCAGGGAGTAGGAGAGGTCTTTGTGTGACTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTCCTCACGGCAGGGAGTAGGAGAGGTCTTTGTGTGACTCACCT  250

seq1  TGCAGCCCTGAGGTTGGATGGCCTGGTTTCAGCAGCATAGGAGCAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCTGAGGTTGGATGGCCTGGTTTCAGCAGCATAGGAGCAAAGTC  300

seq1  ACGCACAGCTGAGTGTCCCTTACCACAGGTTCCTGGGGTGTAAGCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAGCTGAGTGTCCCTTACCACAGGTTCCTGGGGTGTAAGCTTTGC  350

seq1  AGATTTCCTACGTCTTGGCCCTTGAAATGTTTTGCATAGATTTACTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTACGTCTTGGCCCTTGAAATGTTTTGCATAGATTTACTAGTT  400

seq1  AGATATCCACAATATAAAAAAACCCACAAATTCCAAGACATTCTGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCCACAATATAAAAAAACCCACAAATTCCAAGACATTCTGAAATC  450

seq1  CAGAATTCCCTGAGTGTCACGTAGGCTTTTTGAAATCTAGAACAAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCCCTGAGTGTCACGTAGGCTTTTTGAAATCTAGAACAAGAGTG  500

seq1  TCACTGATAGCTGTCTCTGCATCTTAGATTTTGTGTTGCTGGATGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATAGCTGTCTCTGCATCTTAGATTTTGTGTTGCTGGATGTTTGC  550

seq1  CA-TTGAACTCCAAGGGTCTCCTCTTTTTATTGTGTCCTATCTCTGTGCA  599
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAACTCCAAGGGTCTCCTCTTTTTATTGTGTCCTATCTCTGTGCA  600

seq1  CACACATATCTGTGCATGAATGCCACATCACAAGTGTGGAGGTCAAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATCTGTGCATGAATGCCACATCACAAGTGTGGAGGTCAAAGGA  650

seq1  CAGCTTTCAGGAGTTGGTTCTCTCCTACCATTTGGAGCCAAGGGTTCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCAGGAGTTGGTTCTCTCCTACCATTTGGAGCCAAGGGTTCAAA  700

seq1  CTCAGGTCAGTCAGGCTTAGCAGCAAGCATCTTTGCTTACTGAGCCATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCAGTCAGGCTTAGCAGCAAGCATCTTTGCTTACTGAGCCATCT  750

seq1  TTTTAGCCCTAAGTATTTCTTCAG-CCAACAGTGAGCAACAGGATGGTAA  798
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  TTTTAGCCCTAAGTATTTCTTCAGTCAAACAGTGAGCAACAGGATGGTAA  800

seq1  GGGGTTCCTAGTCTTGTCCCTGAA-GGGAGTGGAGCTCAGC-AAAAGCAA  846
      |||||||||||||||||||||||| | |||||||||||||| ||||||||
seq2  GGGGTTCCTAGTCTTGTCCCTGAATGTGAGTGGAGCTCAGCAAAAAGCAA  850

seq1  G-CCCAGCTCTT-GGGAG-TTCATT-GCTTCCAA-GCTGAGCAAGC-CTT  890
      | |||||||||| ||||| |||||| |||||||| |||||||||||  ||
seq2  GTCCCAGCTCTTGGGGAGTTTCATTGGCTTCCAAGGCTGAGCAAGCTTTT  900

seq1  CAGCC-CTAT  899
      ||||| ||||
seq2  CAGCCTCTAT  910

seq1: chr19_10891692_10892560
seq2: B6Ng01-175I24.g_69_948 (reverse)

seq1  AATTTTCAAATGCCAT-AATGAAG-TTTAGTTATTTT--GAAGCTAACAA  46
      | |||||||||||||| ||||||| ||||||||||||  |||||||||||
seq2  ATTTTTCAAATGCCATAAATGAAGTTTTAGTTATTTTTGGAAGCTAACAA  50

seq1  C-AAAAAAGTA-GGTATTATTC-TAACCCACAAAAGTG-CCATAATTATG  92
      | ||||||||| |||||||||| ||||||||||||||| |||||||||||
seq2  CAAAAAAAGTAGGGTATTATTCTTAACCCACAAAAGTGCCCATAATTATG  100

seq1  TTCTTTTAAATTTTGGTATATGCATGTGTGTAATAC-TTTTTACCATCAC  141
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTTTAAATTTTGGTATATGCATGTGTGTAATACTTTTTTACCATCAC  150

seq1  AATTAAGTGTTAGAATCT-AAACTTCT-AAACCCCAGAATGTAGCCTTAT  189
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AATTAAGTGTTAGAATCTAAAACTTCTAAAACCCCAGAATGTAGCCTTAT  200

seq1  TTAAAAATAAAGTGTTTGTAGAGTTCTTCAACTTAAAATGAGACCTGTGG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAGTGTTTGTAGAGTTCTTCAACTTAAAATGAGACCTGTGG  250

seq1  GATCAGGTCTTAAGTCAATATTACTGTTGTCTTCATAAAACCACACAGAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTCTTAAGTCAATATTACTGTTGTCTTCATAAAACCACACAGAT  300

seq1  GTAGTGCCCAGGGGAAAAAACTAAGTTAAGGTGAAGGCAGAGAGCAGAGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCCAGGGGAAAAAACTAAGTTAAGGTGAAGGCAGAGAGCAGAGT  350

seq1  AGTATTTTGCTGTTTGTTTTCTGAAACAAGGTGTCATGCAGCCAGTCCAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTGCTGTTTGTTTTCTGAAACAAGGTGTCATGCAGCCAGTCCAA  400

seq1  GCTGACCTTGAACTCAATGGAACTGAGAATGGCCTTGAACTCTTAATCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTGAACTCAATGGAACTGAGAATGGCCTTGAACTCTTAATCCT  450

seq1  CCAGAGCCTCTACTTCCTGAGTGCTAGGGTGACAGTGTACTCCACCATGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTCTACTTCCTGAGTGCTAGGGTGACAGTGTACTCCACCATGC  500

seq1  CTCGTGCTGGGCATCAATTCTAAGACTTACTGCTAGCAAAGCAGGTCTAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCTGGGCATCAATTCTAAGACTTACTGCTAGCAAAGCAGGTCTAC  550

seq1  CACATTGCTCCAGCCCCAGCCTGGGAGGAATGCTTTTACAGGCCAAGGGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGCTCCAGCCCCAGCCTGGGAGGAATGCTTTTACAGGCCAAGGGA  600

seq1  GCACCCAAGATGGACACCAACTTGCAGGAGCTAGGAGACCTGGAACACAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAGATGGACACCAACTTGCAGGAGCTAGGAGACCTGGAACACAC  650

seq1  GCTCCCTCACAGACCTTTGTAAGAACCCCAGCAGCTGACATCTTGACCCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCACAGACCTTTGTAAGAACCCCAGCAGCTGACATCTTGACCCT  700

seq1  GGGCCTTAATTCAAACCTCCAGGGCTGTGTGGAATTAATTATCTCTTATT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTAATTCAAACCTCCAGGGCTGTGTGGAATTAATTATCTCTTATT  750

seq1  TATTTCACACCTTGCCTTTGGGACTTTGTCACTTAGCCCTAGGACACTAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACACCTTGCCTTTGGGACTTTGTCACTTAGCCCTAGGACACTAA  800

seq1  ATCACCCACCTCTACACTCGTTTCTGCAACAGAAATTCAGCAGCAGCTCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCACCTCTACACTCGTTTCTGCAACAGAAATTCAGCAGCAGCTCA  850

seq1  GAGGGAGAAGGCTAGAATTCTAGAGAATTC  869
      ||||||||||||||||||||||||||||||
seq2  GAGGGAGAAGGCTAGAATTCTAGAGAATTC  880