BAC Information

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BAC

Clone NameB6Ng01-175J06
Chromosome19 (Build37)
Map Location 45,916,250 - 45,916,961
singlet/doubletsinglet
Overlap gene9130011E15Rik
Upstream geneLOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Downstream geneEG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175J06.bB6Ng01-175J06.g
ACCGA003345GA003346
length1,193714
definitionB6Ng01-175J06.b B6Ng01-175J06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggttagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctgatgttagg
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcaggacaatctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggaaaagaaaaaagaaaagaaaaaagatcgatta
gcggaggtctctaggagatactcgtcactagatgagctcaggaagccagc
tcttagtagctctgaagcagatgaagaattctcctctgaagaaacagact
gggaggaagaagcagctcattatgagaaaaaagggtaccagccaggtaaa
gtgctagctaatcagttaaggaagccaaaagcggctggcgaaggccagtt
tgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggagc
ccccgccctgcgtagtgcgtcagcaatgcgcagagaggcaatgcgcagag
agatgtgcagagaggcagtgcgcagagaggcagtgcgcagactcattcat
tcccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaag
gagccgagggtgggcgtgtccacgctccagtagaatacttacaaattaaa
gagcttgccgagtcggtccgtaaatacggaaccaatgctaattttacctt
ggtgcagttagacaggctcgccggcatggcactaactcctgccgactggc
aaacggttgtaaaagccgctctccctagtatgggcaaatatatggaatgg
agagctctttggccatggaaactgcacaagcgcaagcccgagcaaacgca
gctgctttgactcagagcagagaagatggaccttttggactgttacgggt
ccaggaagcttattctgctggatcaccaactacattggagcttagtccgg
attttcacacgcttatttaaggccttggaaaggggtctcatgc
gaattccttggtcaaggaataagaaccttgaaaaggataaatctatgatg
atgtgactgttcttcatgcctgtaatcccagcatgcaggtggatggttgt
tgaaggtcaacccaggctgtagagtgagaccctgtcgtaatgcatgtcag
caaaagaactttgtgacttgaaaagctttgtgttggctttgagtcttttc
tttctcaccactactttccttggtattcatttctagaactcgggcctagg
acacagaaagagcagctgcagaccactggccttttaatgagttgtctgct
ccctcactactgccctggccccagttttcattcccataaggtattgagtc
gaacagcctatgtctccttgggacatttcagggactactttatctgtact
aaataaatgtgggttgaaggcatataatggaagccccttcctcctgtact
gcagttaaacccagtggttcacacatttagttaagcaagtgttctgtgat
tgagctacattccccagaccccctttctagtttttatcttgatagagtct
tactaatttgctcagactgttctttaacttgctgtgtagctcaggcgagc
tgcaggcctcctggcgaccgggtgtacatgcctgtgccggcggatcccac
tgatgtctatgaaaagtccttgggggctggacaggtgtctctgaccgctc
ttccagaggaccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45916250_45916961
seq2: B6Ng01-175J06.g_62_773 (reverse)

seq1  GGTCCTCTGGAAGAGCAGTCAGAGCCACCTCTCCAGCCCCCAAGGACTTT  50
      |||||||||||||||| ||||||| ||||| |||||||||||||||||||
seq2  GGTCCTCTGGAAGAGCGGTCAGAGACACCTGTCCAGCCCCCAAGGACTTT  50

seq1  TCATAGACATCAGTGGGATCCGCCGGCACAGGCATGTACACCCGGGCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATAGACATCAGTGGGATCCGCCGGCACAGGCATGTACACCCGGTCGCC  100

seq1  AGGAGGCCTGCAGCTCGCCTGAGCTACACAGCAAGTTAAAGAACAGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCTGCAGCTCGCCTGAGCTACACAGCAAGTTAAAGAACAGTCTG  150

seq1  AGCAAATTAGTAAGACTCTATCAAGATAAAAACTAGAAAGGGGGTCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTAGTAAGACTCTATCAAGATAAAAACTAGAAAGGGGGTCTGGG  200

seq1  GAATGTAGCTCAATCACAGAACACTTGCTTAACTAAATGTGTGAACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGCTCAATCACAGAACACTTGCTTAACTAAATGTGTGAACCACT  250

seq1  GGGTTTAACTGCAGTACAGGAGGAAGGGGCTTCCATTATATGCCTTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAACTGCAGTACAGGAGGAAGGGGCTTCCATTATATGCCTTCAAC  300

seq1  CCACATTTATTTAGTACAGATAAAGTAGTCCCTGAAATGTCCCAAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTATTTAGTACAGATAAAGTAGTCCCTGAAATGTCCCAAGGAGA  350

seq1  CATAGGCTGTTCGACTCAATACCTTATGGGAATGAAAACTGGGGCCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTGTTCGACTCAATACCTTATGGGAATGAAAACTGGGGCCAGGG  400

seq1  CAGTAGTGAGGGAGCAGACAACTCATTAAAAGGCCAGTGGTCTGCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGAGGGAGCAGACAACTCATTAAAAGGCCAGTGGTCTGCAGCTG  450

seq1  CTCTTTCTGTGTCCTAGGCCCGAGTTCTAGAAATGAATACCAAGGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGTGTCCTAGGCCCGAGTTCTAGAAATGAATACCAAGGAAAGT  500

seq1  AGTGGTGAGAAAGAAAAGACTCAAAGCCAACACAAAGCTCTTCAAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTGGTGAGAAAGAAAAGACTCAAAGCCAACACAAAGCTTTTCAAGTCAC  550

seq1  AAAGTTCTTTTGCTGACATGCATTACGACAGGGTCTCACTCTACAGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTTTGCTGACATGCATTACGACAGGGTCTCACTCTACAGCCTG  600

seq1  GGTTGACCTTCAACAACCATCCACCTGCATGCTGGGATTACAGGCATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACCTTCAACAACCATCCACCTGCATGCTGGGATTACAGGCATGAA  650

seq1  GAACAGTCACATCATCATAGATTTATCCTTTTCAAGGTTCTTATTCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCACATCATCATAGATTTATCCTTTTCAAGGTTCTTATTCCTTG  700

seq1  ACCAAGGAATTC  712
      ||||||||||||
seq2  ACCAAGGAATTC  712