BAC Information

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BAC

Clone NameB6Ng01-176A04
Chromosome19 (Build37)
Map Location 28,301,727 - 28,426,159
singlet/doubletdoublet
Overlap geneGlis3
Upstream geneVldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176A04.bB6Ng01-176A04.g
ACCGA003662GA003663
length1,1201,161
definitionB6Ng01-176A04.b B6Ng01-176A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,425,029 - 28,426,159)(28,301,727 - 28,302,904)
sequence
gaattcatcaaaaataaccataaaaattccaaggtgataaaggcacagtg
gagtaatggtcccagccatagggaattgttttgctgaaaagaataaaact
ctatgctgtcacaccctgttagtcatggacttgcttaatataccctgcct
gcccgcctctctctaatcctgtctttaacctccccctagatgctaaatga
cattattttggtcttagccagttttatgaggcccagctcggaaattgggt
tcagtaacaaacacccgtaagataatgtatataaggagaagcaggttgct
cctgagtggtaccctgaccacaggcatatggtccttcctggcacgtgacc
cgttccaccagaaaataagatggacctggaatcttagccaaacatttctc
aagatgttttaagaaagaagaaggaaaagaccaggggagcagagacagtt
tggcttattgcatacagagagtagtttctcttgtttgcaaaaagcaagca
agcatacacacacatacaccacatctcaccagccagcaggcacccagact
tgttcatctgatgtacgctgcagttcttgaatgctttgaaacaggggcgc
accgataaaatgagtaggcaagcattcaagccaccagaaaaggtattcat
tgggaatagaatttagcctccagagcaaaaggtacagaatctgtccttca
attcttcccgatgcgcgagtgaaatacgagaagactagggcagatgagcc
acttgaaattcttctcaaggctgtgagttttatcagaatttttcattttc
accctggaagtaccaggaacatggttttcttcaaccctagcctgttgtca
aaatggactttaaaagaaaaatgaatacaagcaatgcctgagagttagag
gtgacgtgaatcttcatccaacccgcacttgcttaaagattctaaacttt
acgaattattaatgttgttagacattgacctttgattggctgacgtcagt
gatgttcactttcatgacctcacacagcgatgcagtactacgtttatatt
tcgtacttagagtgagtctgtctgtatctgctgtgcacagccagttacct
atgcagtttttcttccagtg
gaattccatgagtacaaagggattctacacacagaaagacttaatgaaag
gtagggtggccgagtactcttggatttggtgtttcagatggtacccaact
aaccctagatgattccagaggggagcttctccctaaaggacaagcttggt
ttggagaaatgacttcaccattgtccaaccaaggatccactctgactttt
ggatagccagtgggtcagcagtgggagctaggtgtgtgggatctatcctg
cactatttctcaaattcccaggcctttgtcagagaagaacaaagacagtg
tgtgtgcaatgtggccttctagtttatgctgtaagctctgcaattgtgtt
ggaatggagaccgtcacataggtgacaaagctcgttagtgagacagaatg
cctgactcagaccgaacacaggaagacaactgaggaaggagaaggcgctg
aagggttcgccacattgtcatcttctcctttgtttaagagcatgatgcct
agggttggcagctcgctccccactctctgccgcacgtctggtatctgtca
aggctgttcgcatgaataaaggctgaagagctgagactgcagagacagag
ttctgaaaagactgtttgagccaattaaggagtgcatttccactggagtg
accctccagcagccatgtggattttcggctgtccccttggtcagtcccca
ggctaaagacaccactttgttgtgtagcttgcaaaacaacatcacatatc
cctcatatgttgttttttttcctctcccattttgtttagctttgctttct
aatatcaaagcaactctaagccacgagacatagcttctcagaagacttca
gatgaatgcgttccagatgtgctatttgtagtttgtaccaaatatcacag
tggtagagcaaagatgtcaccaatccctggcaggcattatagcataacac
tagatcagaggcctgcagcctgggactgagtcttcactctaccacttgac
aagctcttgatccttgcaactcaagttctcatctgtgggactagtatgat
cacatacccttgtcagagaatggggagagatcagcttattacttacctgc
ttaaactaaatagttgccactcatcctgactatagtaggtactttatacg
taatatcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28425029_28426159
seq2: B6Ng01-176A04.b_43_1162 (reverse)

seq1  CACTTGAAG-AAAACTGCATTAAGTAAACTGCCTGTGCACAGCCAGAATA  49
      |||| |||| ||||||||||  ||  ||||| |||||||||| ||| |||
seq2  CACTGGAAGAAAAACTGCAT--AGGTAACTGGCTGTGCACAG-CAG-ATA  46

seq1  CAGACAGAACTCACTCTAAGTACGAAATATAAACGTAGGTAACTGCAATC  99
      ||||||| ||||||||||||||||||||||||||||||   ||||| |||
seq2  CAGACAG-ACTCACTCTAAGTACGAAATATAAACGTAG--TACTGC-ATC  92

seq1  GCTGGTGTTGAGGTCATGAAAGTGAACATCACTGACGTTCAGCCAATCAA  149
      ||| ||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  GCT-GTG-TGAGGTCATGAAAGTGAACATCACTGACG-TCAGCCAATCAA  139

seq1  AGGTCAATGTCTAACAAACATTAATAATTCGTAAAGTTTAGAATCTTTAA  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGTCAATGTCTAAC-AACATTAATAATTCGTAAAGTTTAGAATCTTTAA  188

seq1  GCAAGTGCGGGTTGGATGAAGATTCACGTCACCTCTAACTCTCAGGCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCGGGTTGGATGAAGATTCACGTCACCTCTAACTCTCAGGCATT  238

seq1  GCTTGTATTCATTTTTCTTTTAAAGTCCATTTTGACAACAGGCTAGGGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATTCATTTTTCTTTTAAAGTCCATTTTGACAACAGGCTAGGGTT  288

seq1  GAAGAAAACCATGTTCCTGGTACTTCCAGGGTGAAAATGAAAAATTCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACCATGTTCCTGGTACTTCCAGGGTGAAAATGAAAAATTCTGA  338

seq1  TAAAACTCACAGCCTTGAGAAGAATTTCAAGTGGCTCATCTGCCCTAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCACAGCCTTGAGAAGAATTTCAAGTGGCTCATCTGCCCTAGTC  388

seq1  TTCTCGTATTTCACTCGCGCATCGGGAAGAATTGAAGGACAGATTCTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTATTTCACTCGCGCATCGGGAAGAATTGAAGGACAGATTCTGTA  438

seq1  CCTTTTGCTCTGGAGGCTAAATTCTATTCCCAATGAATACCTTTTCTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTCTGGAGGCTAAATTCTATTCCCAATGAATACCTTTTCTGGT  488

seq1  GGCTTGAATGCTTGCCTACTCATTTTATCGGTGCGCCCCTGTTTCAAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAATGCTTGCCTACTCATTTTATCGGTGCGCCCCTGTTTCAAAGC  538

seq1  ATTCAAGAACTGCAGCGTACATCAGATGAACAAGTCTGGGTGCCTGCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGAACTGCAGCGTACATCAGATGAACAAGTCTGGGTGCCTGCTGG  588

seq1  CTGGTGAGATGTGGTGTATGTGTGTGTATGCTTGCTTGCTTTTTGCAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGATGTGGTGTATGTGTGTGTATGCTTGCTTGCTTTTTGCAAAC  638

seq1  AAGAGAAACTACTCTCTGTATGCAATAAGCCAAACTGTCTCTGCTCCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACTACTCTCTGTATGCAATAAGCCAAACTGTCTCTGCTCCCCT  688

seq1  GGTCTTTTCCTTCTTCTTTCTTAAAACATCTTGAGAAATGTTTGGCTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTCCTTCTTCTTTCTTAAAACATCTTGAGAAATGTTTGGCTAAG  738

seq1  ATTCCAGGTCCATCTTATTTTCTGGTGGAACGGGTCACGTGCCAGGAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGTCCATCTTATTTTCTGGTGGAACGGGTCACGTGCCAGGAAGG  788

seq1  ACCATATGCCTGTGGTCAGGGTACCACTCAGGAGCAACCTGCTTCTCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATGCCTGTGGTCAGGGTACCACTCAGGAGCAACCTGCTTCTCCTT  838

seq1  ATATACATTATCTTACGGGTGTTTGTTACTGAACCCAATTTCCGAGCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTATCTTACGGGTGTTTGTTACTGAACCCAATTTCCGAGCTGG  888

seq1  GCCTCATAAAACTGGCTAAGACCAAAATAATGTCATTTAGCATCTAGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATAAAACTGGCTAAGACCAAAATAATGTCATTTAGCATCTAGGGG  938

seq1  GAGGTTAAAGACAGGATTAGAGAGAGGCGGGCAGGCAGGGTATATTAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAAAGACAGGATTAGAGAGAGGCGGGCAGGCAGGGTATATTAAGC  988

seq1  AAGTCCATGACTAACAGGGTGTGACAGCATAGAGTTTTATTCTTTTCAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGACTAACAGGGTGTGACAGCATAGAGTTTTATTCTTTTCAGC  1038

seq1  AAAACAATTCCCTATGGCTGGGACCATTACTCCACTGTGCCTTTATCACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTCCCTATGGCTGGGACCATTACTCCACTGTGCCTTTATCACC  1088

seq1  TTGGAATTTTTATGGTTATTTTTGATGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  TTGGAATTTTTATGGTTATTTTTGATGAATTC  1120

seq1: chr19_28301727_28302904
seq2: B6Ng01-176A04.g_63_1223

seq1  GAATTCCATGAGTACAAAGGGATTCTACACACAGAAAGACTTAATGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGTACAAAGGGATTCTACACACAGAAAGACTTAATGAAAG  50

seq1  GTAGGGTGGCCGAGTACTCTTGGATTTGGTGTTTCAGATGGTACCCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTGGCCGAGTACTCTTGGATTTGGTGTTTCAGATGGTACCCAACT  100

seq1  AACCCTAGATGATTCCAGAGGGGAGCTTCTCCCTAAAGGACAAGCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGATGATTCCAGAGGGGAGCTTCTCCCTAAAGGACAAGCTTGGT  150

seq1  TTGGAGAAATGACTTCACCATTGTCCAACCAAGGATCCACTCTGACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAATGACTTCACCATTGTCCAACCAAGGATCCACTCTGACTTTT  200

seq1  GGATAGCCAGTGGGTCAGCAGTGGGAGCTAGGTGTGTGGGATCTATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCAGTGGGTCAGCAGTGGGAGCTAGGTGTGTGGGATCTATCCTG  250

seq1  CACTATTTCTCAAATTCCCAGGCCTTTGTCAGAGAAGAACAAAGACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTCTCAAATTCCCAGGCCTTTGTCAGAGAAGAACAAAGACAGTG  300

seq1  TGTGTGCAATGTGGCCTTCTAGTTTATGCTGTAAGCTCTGCAATTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAATGTGGCCTTCTAGTTTATGCTGTAAGCTCTGCAATTGTGTT  350

seq1  GGAATGGAGACCGTCACATAGGTGACAAAGCTCGTTAGTGAGACAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGACCGTCACATAGGTGACAAAGCTCGTTAGTGAGACAGAATG  400

seq1  CCTGACTCAGACCGAACACAGGAAGACAACTGAGGAAGGAGAAGGCGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCAGACCGAACACAGGAAGACAACTGAGGAAGGAGAAGGCGCTG  450

seq1  AAGGGTTCGCCACATTGTCATCTTCTCCTTTGTTTAAGAGCATGATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCGCCACATTGTCATCTTCTCCTTTGTTTAAGAGCATGATGCCT  500

seq1  AGGGTTGGCAGCTCGCTCCCCACTCTCTGCCGCACGTCTGGTATCTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGCAGCTCGCTCCCCACTCTCTGCCGCACGTCTGGTATCTGTCA  550

seq1  AGGCTGTTCGCATGAATAAAGGCTGAAGAGCTGAGACTGCAGAGACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTCGCATGAATAAAGGCTGAAGAGCTGAGACTGCAGAGACAGAG  600

seq1  TTCTGAAAAGACTGTTTGAGCCAATTAAGGAGTGCATTTCCACTGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAAGACTGTTTGAGCCAATTAAGGAGTGCATTTCCACTGGAGTG  650

seq1  ACCCTCCAGCAGCCATGTGGATTTTCGGCTGTCCCCTTGGTCAGTCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAGCAGCCATGTGGATTTTCGGCTGTCCCCTTGGTCAGTCCCCA  700

seq1  GGCTAAAGACACCACTTTGTTGTGTAGCTTGCAAAACAACATCACATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGACACCACTTTGTTGTGTAGCTTGCAAAACAACATCACATATC  750

seq1  CCTCATATGTTGTTTTTTTTCCTCTCCCATTTTGTTTAGCTTTGCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATGTTGTTTTTTTTCCTCTCCCATTTTGTTTAGCTTTGCTTTCT  800

seq1  AATATCAAAGCAACTCTAAGCCACGAGACATAGCTTCTCAGAAGACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAAGCAACTCTAAGCCACGAGACATAGCTTCTCAGAAGACTTCA  850

seq1  GATGAATGCGTTCCAGATGTGCTATTTGTAGTTTGTACCAAATATCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGCGTTCCAGATGTGCTATTTGTAGTTTGTACCAAATATCACAG  900

seq1  TGGTAGAGCAAAGATGTCACCAATCCCTGG-AGGCATTATAGCATAACAC  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGTAGAGCAAAGATGTCACCAATCCCTGGCAGGCATTATAGCATAACAC  950

seq1  TAGATCAGAGGCCTGCAGCCTGGGACTGAGTCTTCACTCTACCACTTGAA  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGATCAGAGGCCTGCAGCCTGGGACTGAGTCTTCACTCTACCACTTG-A  999

seq1  CAAGCTCTTGAATTCCTTTGCAACTCAAGTTTTCTCATCTGT-GGACTAG  1048
      |||||||||||  ||| ||||||||||||  ||||||||||| |||||||
seq2  CAAGCTCTTGA--TCC-TTGCAACTCAAG--TTCTCATCTGTGGGACTAG  1044

seq1  TAATGATCACATTACCCCTGTCAGAAGGATGGGAGAAGGATCAAGCTTAT  1098
      | ||||||||| ||||| |||||| || ||||| ||  |||| |||||| 
seq2  T-ATGATCACA-TACCCTTGTCAG-AGAATGGG-GAGAGATC-AGCTTA-  1088

seq1  TTACTTACCTGCTTAAAACTAAAAATATGTGCCAACTCATCCCTGACATA  1148
      |||||||||||||| |||||  |||||  |||| |||||| |||||| ||
seq2  TTACTTACCTGCTT-AAACT--AAATAGTTGCC-ACTCAT-CCTGAC-TA  1132

seq1  TAGTAAGTACTTTATACGTAATTATCACTT  1178
      ||||| ||||||||||||||| ||||||||
seq2  TAGTAGGTACTTTATACGTAA-TATCACTT  1161