BAC Information

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BAC

Clone NameB6Ng01-176B20
Chromosome19 (Build37)
Map Location 19,386,136 - 19,541,733
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B20.bB6Ng01-176B20.g
ACCGA003739GA003740
length1,1561,031
definitionB6Ng01-176B20.b B6Ng01-176B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,540,570 - 19,541,733)(19,386,136 - 19,387,159)
sequence
gaattcttcagaagggtgatataccagaaattcatctgtcatcagcatga
gtcatgctatcatgggtgaacacaaaccattgttaaggtctagttgtcct
tacactcctagacacatgtaagcaggtagatatttataaaatgcttcacg
gggtctggtggagtctttattaacatgtgcctctgccagttatgatttga
agacaatttagataatgatcagattttaatattctgtaggtaatctcaaa
caacatcacacacacacagagagagaacatataattttaacgccaaagag
tacacttatgaatgtaaatcttggctcaactaacatcactagaaacatta
ccagatggatttattactcatgaccattccaataaggccggtatatggag
atttaataccactgacgtcttggatatcattcatctttactcttttgaga
aatatctgataagagcctatgagtaggagttagtaaaaatcctagtctat
gagctatgaaaaaaatagctaagttgatgggtgtggggctaaaaagccaa
gtaccccatatggaatagggtctatcaggcaggagtgtgggcaaggagag
tggatatagaagagaaagtaaaagtataaaattggcaaggattgggaata
tattactaataagacacatttccttgcaaattttgtagtttgagcagact
ataaataatgtgtgatcacagaaattctcagaaagtgaacctatagcttc
taagcagaagtgttgtggcagaaaataaaggctaaatttcaagtcaaata
attcagttgtgccacgaggatgagtatgaccttgaaaggatacacagtca
gggcttttccatgtcctcagatacatactgacaaactttaaagatgaccc
gaatgcttcctagcacaaatatttcatgatgtcattctcttgagtccttg
tctgataaataagagtattcaagctaaaaatcagaggactcctagagaga
ctcaatgcagaaatgccctctgaaaatgatcatgtaattggtgggactcc
aaggtcccaggatcaacttacactttacaactgctatatgtctgctttca
tcttgctatgcagcaaagcaacgattttagagtgcaactgcatagtggag
agaaaa

gaattccaatcatgtaaatttataatcttacattggaaaaaattaaaatc
atgggctggaaaagtttgatactttgtatcatgtacttgttagtcttgct
ctctcatctatactatgagtatttcaaatctctgcttggtccttcagatt
cattctgcaattctgtagagagatacacaaagaacactaagctttgtaat
cttttggaaagaaaccttcaatgtttcttcgtgtcaactattctttttta
tatccttccttaagaaagaaacattcattatcatatttcaaggttaatgc
cttctataagacaaactcgttgactcttcaagatgtttggctttataagg
aaaagttcaaggcatattgtgaatgtctacctctggtttattcctctcat
cagataagtgaatggaagtgtgaggatctctagctgtgtagaactgcagg
ggtggcttgatagaagaaagctcatactttcccttcatctcttgagttct
caggagaaacctcgatagagaaattattggttggattaagttttagggaa
gtgatagctttctcttagaatgcgaatgtttgctttctgcaaccattgca
aaggcagtgcttgtagaataattgtcagctctgaagttagtgctgctaag
cttgctaaagcaaccccatcatggatcaggacgaagaggtgaatgggagg
aatgaacacaagaacaccctgtgtgctttctcttatttattgaatttagt
ttctcatcatagctttggtgttttcacttgagaagattctcaaagtgtga
gcatgaaacctctaaaatgtataactcagaaaatgggagatgagggcaac
aaagatgggttatgataatagctctatttttcagagtattagcagagttt
acttgttttcactaattgcttctcctattttcataacctatcaatattat
tgacatgatgagataaaggataattttatatactgatagttttttttaaa
ttaactaaataaaaccagttagaaattgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19540570_19541733
seq2: B6Ng01-176B20.b_50_1205 (reverse)

seq1  TTTTCTCTCCACTAT-CA-TTCCAACCTCTAAAAATCGCTGCTTTGCTGC  48
      ||||||||||||||| || || ||  |||| ||||||| |||||||||||
seq2  TTTTCTCTCCACTATGCAGTTGCA--CTCT-AAAATCGTTGCTTTGCTGC  47

seq1  ATAGC-AGATGGAAGCAAGACATTATAGCAGTTGTAAAAGTGTAGGTGGA  97
      ||||| ||||| |||| ||||| |||||||||||| |||||||| || ||
seq2  ATAGCAAGATGAAAGC-AGACA-TATAGCAGTTGT-AAAGTGTAAGTTGA  94

seq1  TTCTTGGGACCTTGGGAGTCCCAC--AATACATTGATTCAATTTTTCAGA  145
       || ||||||||| ||||||||||  | |||| ||| |||  ||||||||
seq2  -TCCTGGGACCTT-GGAGTCCCACCAATTACA-TGA-TCA--TTTTCAGA  138

seq1  GGGCATTTCTGCATTGAGTCTCTCCTAGGAGTCCTCTGATTTTTAGCTTG  195
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGGCATTTCTGCATTGAGTCTCT-CTAGGAGTCCTCTGATTTTTAGCTTG  187

seq1  AATACTCTTATTTATCAGACAAGGACTCAAGAGAATGACATCATGAAATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTTATTTATCAGACAAGGACTCAAGAGAATGACATCATGAAATA  237

seq1  TTTGTGCTAGGAAGCATTCGGGTCATCTTTTAAGTTTGTCAGTATGTATC  295
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTGTGCTAGGAAGCATTCGGGTCATCTTTAAAGTTTGTCAGTATGTATC  287

seq1  TGAGGACATGGAAAAGCCCTGACTGTGTATCCTTTCAAGGTCATACTCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACATGGAAAAGCCCTGACTGTGTATCCTTTCAAGGTCATACTCAT  337

seq1  CCTCGTGGCACAACTGAATTATTTGACTTGAAATTTAGCCTTTATTTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGGCACAACTGAATTATTTGACTTGAAATTTAGCCTTTATTTTCT  387

seq1  GCCACAACACTTCTGCTTAGAAGCTATAGGTTCACTTTCTGAGAATTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACACTTCTGCTTAGAAGCTATAGGTTCACTTTCTGAGAATTTCT  437

seq1  GTGATCACACATTATTTATAGTCTGCTCAAACTACAAAATTTGCAAGGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACACATTATTTATAGTCTGCTCAAACTACAAAATTTGCAAGGAA  487

seq1  ATGTGTCTTATTAGTAATATATTCCCAATCCTTGCCAATTTTATACTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTATTAGTAATATATTCCCAATCCTTGCCAATTTTATACTTTT  537

seq1  ACTTTCTCTTCTATATCCACTCTCCTTGCCCACACTCCTGCCTGATAGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTTCTATATCCACTCTCCTTGCCCACACTCCTGCCTGATAGAC  587

seq1  CCTATTCCATATGGGGTACTTGGCTTTTTAGCCCCACACCCATCAACTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCATATGGGGTACTTGGCTTTTTAGCCCCACACCCATCAACTTA  637

seq1  GCTATTTTTTTCATAGCTCATAGACTAGGATTTTTACTAACTCCTACTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTTTTCATAGCTCATAGACTAGGATTTTTACTAACTCCTACTCA  687

seq1  TAGGCTCTTATCAGATATTTCTCAAAAGAGTAAAGATGAATGATATCCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTTATCAGATATTTCTCAAAAGAGTAAAGATGAATGATATCCAA  737

seq1  GACGTCAGTGGTATTAAATCTCCATATACCGGCCTTATTGGAATGGTCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAGTGGTATTAAATCTCCATATACCGGCCTTATTGGAATGGTCAT  787

seq1  GAGTAATAAATCCATCTGGTAATGTTTCTAGTGATGTTAGTTGAGCCAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATAAATCCATCTGGTAATGTTTCTAGTGATGTTAGTTGAGCCAAG  837

seq1  ATTTACATTCATAAGTGTACTCTTTGGCGTTAAAATTATATGTTCTCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTCATAAGTGTACTCTTTGGCGTTAAAATTATATGTTCTCTCT  887

seq1  CTGTGTGTGTGTGATGTTGTTTGAGATTACCTACAGAATATTAAAATCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGATGTTGTTTGAGATTACCTACAGAATATTAAAATCTG  937

seq1  ATCATTATCTAAATTGTCTTCAAATCATAACTGGCAGAGGCACATGTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCTAAATTGTCTTCAAATCATAACTGGCAGAGGCACATGTTAA  987

seq1  TAAAGACTCCACCAGACCCCGTGAAGCATTTTATAAATATCTACCTGCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTCCACCAGACCCCGTGAAGCATTTTATAAATATCTACCTGCTT  1037

seq1  ACATGTGTCTAGGAGTGTAAGGACAACTAGACCTTAACAATGGTTTGTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTCTAGGAGTGTAAGGACAACTAGACCTTAACAATGGTTTGTGT  1087

seq1  TCACCCATGATAGCATGACTCATGCTGATGACAGATGAATTTCTGGTATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATGATAGCATGACTCATGCTGATGACAGATGAATTTCTGGTATA  1137

seq1  TCACCCTTCTGAAGAATTC  1164
      |||||||||||||||||||
seq2  TCACCCTTCTGAAGAATTC  1156


seq1: chr19_19386136_19387159
seq2: B6Ng01-176B20.g_64_1094

seq1  GAATTCCAATCATGTAAATTTATAATCTTACATTGGAAAAAATTAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCATGTAAATTTATAATCTTACATTGGAAAAAATTAAAATC  50

seq1  ATGGGCTGGAAAAGTTTGATACTTTGTATCATGTACTTGTTAGTCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGGAAAAGTTTGATACTTTGTATCATGTACTTGTTAGTCTTGCT  100

seq1  CTCTCATCTATACTATGAGTATTTCAAATCTCTGCTTGGTCCTTCAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCTATACTATGAGTATTTCAAATCTCTGCTTGGTCCTTCAGATT  150

seq1  CATTCTGCAATTCTGTAGAGAGATACACAAAGAACACTAAGCTTTGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCAATTCTGTAGAGAGATACACAAAGAACACTAAGCTTTGTAAT  200

seq1  CTTTTGGAAAGAAACCTTCAATGTTTCTTCGTGTCAACTATTCTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAAAGAAACCTTCAATGTTTCTTCGTGTCAACTATTCTTTTTTA  250

seq1  TATCCTTCCTTAAGAAAGAAACATTCATTATCATATTTCAAGGTTAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCCTTAAGAAAGAAACATTCATTATCATATTTCAAGGTTAATGC  300

seq1  CTTCTATAAGACAAACTCGTTGACTCTTCAAGATGTTTGGCTTTATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATAAGACAAACTCGTTGACTCTTCAAGATGTTTGGCTTTATAAGG  350

seq1  AAAAGTTCAAGGCATATTGTGAATGTCTACCTCTGGTTTATTCCTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAAGGCATATTGTGAATGTCTACCTCTGGTTTATTCCTCTCAT  400

seq1  CAGATAAGTGAATGGAAGTGTGAGGATCTCTAGCTGTGTAGAACTGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGTGAATGGAAGTGTGAGGATCTCTAGCTGTGTAGAACTGCAGG  450

seq1  GGTGGCTTGATAGAAGAAAGCTCATACTTTCCCTTCATCTCTTGAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTGATAGAAGAAAGCTCATACTTTCCCTTCATCTCTTGAGTTCT  500

seq1  CAGGAGAAACCTCGATAGAGAAATTATTGGTTGGATTAAGTTTTAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAACCTCGATAGAGAAATTATTGGTTGGATTAAGTTTTAGGGAA  550

seq1  GTGATAGCTTTCTCTTAGAATGCGAATGTTTGCTTTCTGCAACCATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGCTTTCTCTTAGAATGCGAATGTTTGCTTTCTGCAACCATTGCA  600

seq1  AAGGCAGTGCTTGTAGAATAATTGTCAGCTCTGAAGTTAGTGCTGCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTGCTTGTAGAATAATTGTCAGCTCTGAAGTTAGTGCTGCTAAG  650

seq1  CTTGCTAAAGCAACCCCATCATGGATCAGGACGAAGAGGTGAATGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAAAGCAACCCCATCATGGATCAGGACGAAGAGGTGAATGGGAGG  700

seq1  AATGAACACAAGAACACCCTGTGTGCTTTCTCTTATTTATTGAATTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACACAAGAACACCCTGTGTGCTTTCTCTTATTTATTGAATTTAGT  750

seq1  TTCTCATCATAGCTTTGGTGTTTTCACTTGAGAAGATTCTCAAAGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCATAGCTTTGGTGTTTTCACTTGAGAAGATTCTCAAAGTGTGA  800

seq1  GCATGAAACCTCTAAAATGTATAACTCAGAAAATGGGAGATGAGGGCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAACCTCTAAAATGTATAACTCAGAAAATGGGAGATGAGGGCAAC  850

seq1  AAAGATGGGTTATGATAATAGCTCTATTTTTCAGAGTATTAGCAGAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGGTTATGATAATAGCTCTATTTTTCAGAGTATTAGCAGAGTTT  900

seq1  ACTTG-TTTCACTAATTGCTTCTCCTATTTTCATAACCTATCAATATTAT  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTCACTAATTGCTTCTCCTATTTTCATAACCTATCAATATTAT  950

seq1  TGACATGATGAGATAAA-GATAATTTTATATACTGATAG--TTTTTTAAA  996
      ||||||||||||||||| |||||||||||||||||||||  |||||||||
seq2  TGACATGATGAGATAAAGGATAATTTTATATACTGATAGTTTTTTTTAAA  1000

seq1  TT-ACTAAATAAAACCAG-TAGAAA-TGCTT  1024
      || ||||||||||||||| |||||| |||||
seq2  TTAACTAAATAAAACCAGTTAGAAATTGCTT  1031


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