BAC Information

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BAC

Clone NameB6Ng01-176G21
Chromosome19 (Build37)
Map Location 58,123,054 - 58,258,549
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176G21.bB6Ng01-176G21.g
ACCGA003965GA003966
length1,137893
definitionB6Ng01-176G21.b B6Ng01-176G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,257,425 - 58,258,549)(58,123,054 - 58,123,928)
sequence
gaattcttcacgtcccctcaataaatctctattcactctagaaaaaaata
tggaaaacgaaggttcatgagcatggataatcatcttctaaccatagttg
catggcgaccggctgcctccgccttcatgtctgcaccaggaccatggtaa
actctcaccccttaagatgttgcagtacaggtcttttatttcctgctgca
ccaggaaaaaccaacagcaccaaagaagggagagaggtagaaaagaagga
agaaatattaagaattgccgtcgtataaaacatcacacctgtctgtgata
gaatgtgtgtgatcctcgctgtatccactgttctcaattaatttgttggg
ctgtctttgtaccgcctccagtgaaagaatgttttaacttgctcttacag
ataagtatcgggactgagcaaccctgtctgactttgcagtcaaagttata
gtgcccagagcagacaaacacgggcaggcagtcaattccctagcagaact
gtgtcttctcaaagctcatttctctctgagtgagcgtaactcagaggtgt
aatggagaactgcggtccacaccagatcgaccttgcacagaagtctgtaa
caggcataatttctgcccagaacacctgtgacacagggagagcaaatgca
cacaggcacttggcacctggcaaaagcttaaggaaggtcgggaaagacaa
tgacaaaggtgtgggaggggctaagggagtgggaggggctaaagaaagta
gcccatgcatgaggggggtctgcccactctccttcttcatggggatggcc
gatgaagacatgagactgactcgagcttgtaatcaagattcaccaatgaa
aacctgaatataaagaaataagaagcatgggtattgtgagagttactctt
aggctccgcaggctcagctctgtcttagatacctgcatgcaccatccata
cgtggatcgaaaccctttcctcccttcttaggagaatgcatctcttctag
cttacggatttcttgcctgataagggaagttacagaacctgtgtgctcag
aacagagataaaacacacttgcctgagcaaaataaagccacattatcgat
cagcctcacctgtcctatcctaccatgggatgcctgt
gaattcctttcgaatgatctctctctctctctctctctctctctctctct
ctctctcttcccctccctccctcctccctgtctctctctcactctctctc
cctccctccctctctccccacaccctctctcacaccctctccctgctctc
tcttggatactgtagtccctgagacctgaccccacagcagacacagagca
gacctttctattcttggtcccaccatgtttttcccaagccttgatttctg
aggagggaaaggacagctctacgtgtcactcctcacaggcccatgaacca
ttcacaggtctgttgaaacatccgggggatagacttcagggcaggaggcc
ctcccggtcattagccgctttgacatagcgcccacatccctcagtggtac
ccatgcacacagcagcctgagtgagcagttttcatacaatctcttcagcc
tcttagacctgttggtgctataattttatccctccttgctttttcctttt
ttttttttttccttgagacaatgccaatctgtgtatcctgagctggtctc
aaactggccatccctcagcatccatcttccacatgctgcatttacctgca
aagccaccacgcctggctccatacctactctgtccttttcccctcgtcag
ctgcccgttttcaagattcagtttcaaatttcgcttctgccccacttttt
gtagcgccgacatgcaggaccacacccagtgaaagtctttcctcttctgc
tccgacctggcagccatattgaccataatgggacgtccctttaccctgtt
atccaggcaaaagactgcacagtcagggtcctggactttactattttgct
ttgataaacatttttattgatgtaagtaaacatttgattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58257425_58258549
seq2: B6Ng01-176G21.b_45_1181 (reverse)

seq1  ACAGGCAT-CCAT-GTTGGATAGG-CAGGTGA-GCTGATACGAT-ATGTG  45
      |||||||| |||| || ||||||| ||||||| |||||| |||| |||||
seq2  ACAGGCATCCCATGGTAGGATAGGACAGGTGAGGCTGAT-CGATAATGTG  49

seq1  GCTTTATTCTGCTCAGGCAAGTGTGTTTTATCCCTG-TCTGAGCACACA-  93
      |||||||| ||||||||||||||||||||||| ||| |||||||||||| 
seq2  GCTTTATTTTGCTCAGGCAAGTGTGTTTTATCTCTGTTCTGAGCACACAG  99

seq1  GTTCTGTACCTCCCTTTATCAGGC-AGAAATCCGTAAGCTAG-AGAGATG  141
      |||||||| || || ||||||||| ||||||||||||||||| |||||||
seq2  GTTCTGTAACTTCCCTTATCAGGCAAGAAATCCGTAAGCTAGAAGAGATG  149

seq1  CATTCTCCTTAGAA-GGAGGAAAGGG-TTCGATCCACGTATGGAT-GTGC  188
      ||||||||| |||| ||||||||||| |||||||||||||||||| ||||
seq2  CATTCTCCTAAGAAGGGAGGAAAGGGTTTCGATCCACGTATGGATGGTGC  199

seq1  ATGCAGGTATCTAAGACAGAGCTGAGCCTGCGGAGCCT-AGAGTAACTCT  237
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGCAGGTATCTAAGACAGAGCTGAGCCTGCGGAGCCTAAGAGTAACTCT  249

seq1  CACAATACCCATGCTTCTTATTTCTTTATATTCAGGTTTTCATTGGTGAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACCCATGCTTCTTATTTCTTTATATTCAGGTTTTCATTGGTGAA  299

seq1  TCTTGATTACAAGCTCGAGTCAGTCTCATGTCTTCATCGGCCATCCCCAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTACAAGCTCGAGTCAGTCTCATGTCTTCATCGGCCATCCCCAT  349

seq1  GAAGAAGGAGAGTGGGCAGACCCCCCTCATGCATGGGCTACTTTCTTTAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAGAGTGGGCAGACCCCCCTCATGCATGGGCTACTTTCTTTAG  399

seq1  CCCCTCCCACTCCCTTAGCCCCTCCCACACCTTTGTCATTGTCTTTCCCG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCACTCCCTTAGCCCCTCCCACACCTTTGTCATTGTCTTTCCCG  449

seq1  ACCTTCCTTAAGCTTTTGCCAGGTGCCAAGTGCCTGTGTGCATTTGCTCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTTAAGCTTTTGCCAGGTGCCAAGTGCCTGTGTGCATTTGCTCT  499

seq1  CCCTGTGTCACAGGTGTTCTGGGCAGAAATTATGCCTGTTACAGACTTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTCACAGGTGTTCTGGGCAGAAATTATGCCTGTTACAGACTTCT  549

seq1  GTGCAAGGTCGATCTGGTGTGGACCGCAGTTCTCCATTACACCTCTGAGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGTCGATCTGGTGTGGACCGCAGTTCTCCATTACACCTCTGAGT  599

seq1  TACGCTCACTCAGAGAGAAATGAGCTTTGAGAAGACACAGTTCTGCTAGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTCACTCAGAGAGAAATGAGCTTTGAGAAGACACAGTTCTGCTAGG  649

seq1  GAATTGACTGCCTGCCCGTGTTTGTCTGCTCTGGGCACTATAACTTTGAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACTGCCTGCCCGTGTTTGTCTGCTCTGGGCACTATAACTTTGAC  699

seq1  TGCAAAGTCAGACAGGGTTGCTCAGTCCCGATACTTATCTGTAAGAGCAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTCAGACAGGGTTGCTCAGTCCCGATACTTATCTGTAAGAGCAA  749

seq1  GTTAAAACATTCTTTCACTGGAGGCGGTACAAAGACAGCCCAACAAATTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACATTCTTTCACTGGAGGCGGTACAAAGACAGCCCAACAAATTA  799

seq1  ATTGAGAACAGTGGATACAGCGAGGATCACACACATTCTATCACAGACAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAACAGTGGATACAGCGAGGATCACACACATTCTATCACAGACAG  849

seq1  GTGTGATGTTTTATACGACGGCAATTCTTAATATTTCTTCCTTCTTTTCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGTTTTATACGACGGCAATTCTTAATATTTCTTCCTTCTTTTCT  899

seq1  ACCTCTCTCCCTTCTTTGGTGCTGTTGGTTTTTCCTGGTGCAGCAGGAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTCCCTTCTTTGGTGCTGTTGGTTTTTCCTGGTGCAGCAGGAAA  949

seq1  TAAAAGACCTGTACTGCAACATCTTAAGGGGTGAGAGTTTACCATGGTCC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACCTGTACTGCAACATCTTAAGGGGTGAGAGTTTACCATGGTCC  999

seq1  TGGTGCAGACATGAAGGCGGAGGCAGCCGGTCGCCATGCAACTATGGTTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGACATGAAGGCGGAGGCAGCCGGTCGCCATGCAACTATGGTTA  1049

seq1  GAAGATGATTATCCATGCTCATGAACCTTCGTTTTCCATATTTTTTTCTA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATTATCCATGCTCATGAACCTTCGTTTTCCATATTTTTTTCTA  1099

seq1  GAGTGAATAGAGATTTATTGAGGGGACGTGAAGAATTC  1125
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATAGAGATTTATTGAGGGGACGTGAAGAATTC  1137

seq1: chr19_58123054_58123928
seq2: B6Ng01-176G21.g_63_954

seq1  GAATTCCTTTCGAATGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCGAATGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTTCCCCTCCCTCCCTCCTCCCTGTCTCTCTCTCACTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTCCCCTCCCTCCCTCCTCCCTGTCTCTCTCTCACTCTCTCTC  100

seq1  CCTCCCTCCCTCTCTCCCCACACCCTCTCTCACACCCTCTCCCTGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCTCTCCCCACACCCTCTCTCACACCCTCTCCCTGCTCTC  150

seq1  TCTTGGATACTGTAGTCCCTGAGACCTGACCCCACAGCAGACACAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATACTGTAGTCCCTGAGACCTGACCCCACAGCAGACACAGAGCA  200

seq1  GACCTTTCTATTCTTGGTCCCACCATGTTTTTCCCAAGCCTTGATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCTATTCTTGGTCCCACCATGTTTTTCCCAAGCCTTGATTTCTG  250

seq1  AGGAGGGAAAGGACAGCTCTACGTGTCACTCCTCACAGGCCCATGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAAAGGACAGCTCTACGTGTCACTCCTCACAGGCCCATGAACCA  300

seq1  TTCACAGGTCTGTTGAAACATCCGGGGGATAGACTTCAGGGCAGGAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTCTGTTGAAACATCCGGGGGATAGACTTCAGGGCAGGAGGCC  350

seq1  CTCCCGGTCATTAGCCGCTTTGACATAGCGCCCACATCCCTCAGTGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGTCATTAGCCGCTTTGACATAGCGCCCACATCCCTCAGTGGTAC  400

seq1  CCATGCACACAGCAGCCTGAGTGAGCAGTTTTCATACAATCTCTTCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACACAGCAGCCTGAGTGAGCAGTTTTCATACAATCTCTTCAGCC  450

seq1  TCTTAGACCTGTTGGTGCTATAATTTTATCCCTCCTTGCTTTTTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGACCTGTTGGTGCTATAATTTTATCCCTCCTTGCTTTTTCCTTTT  500

seq1  TTTTTTTTTTCCTTGAGACAATGCCAATCTGTGTATCCTGAGCTGGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCTTGAGACAATGCCAATCTGTGTATCCTGAGCTGGTCTC  550

seq1  AAACTGGCCATCCCTCAGCATCCATCTTCCACATGCTGCAGTTACCTGCA  600
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACTGGCCATCCCTCAGCATCCATCTTCCACATGCTGCATTTACCTGCA  600

seq1  AAGCCACCACGCCTGGCTCCATACCTACTCTGTCCTTT--CCCTCGTCAG  648
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  AAGCCACCACGCCTGGCTCCATACCTACTCTGTCCTTTTCCCCTCGTCAG  650

seq1  CTGCCCGTTTTCAAGATTCAG-TTCAAATTTCGCTTCTGCCCCAC-TTTT  696
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CTGCCCGTTTTCAAGATTCAGTTTCAAATTTCGCTTCTGCCCCACTTTTT  700

seq1  GTAGCGCCGACATGCAGGACCACAACCAGTGAAAGTCTTTCCTCTTCTGC  746
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGCGCCGACATGCAGGACCACACCCAGTGAAAGTCTTTCCTCTTCTGC  750

seq1  TCCGACCTGGCAGCCATATTGACCATAAT-GGTCGTCCCTTTA-CCTGGT  794
      ||||||||||||||||||||||||||||| || |||||||||| |||| |
seq2  TCCGACCTGGCAGCCATATTGACCATAATGGGACGTCCCTTTACCCTGTT  800

seq1  ATCCAGGCAGAAG-CTGC-CAG-CAGGTTCCT-GACCTTACTA-TTTGC-  838
      ||||||||| ||| |||| ||| |||| |||| ||| |||||| ||||| 
seq2  ATCCAGGCAAAAGACTGCACAGTCAGGGTCCTGGACTTTACTATTTTGCT  850

seq1  TTGATAAACA-TTTTATTGATG--AGTAA--AATTGATTATT  875
      |||||||||| |||||||||||  |||||  | |||||||||
seq2  TTGATAAACATTTTTATTGATGTAAGTAAACATTTGATTATT  892