BAC Information

Click to search

BAC

Clone NameB6Ng01-176J13
Chromosome19 (Build37)
Map Location 25,322,120 - 25,479,803
singlet/doubletdoublet
Overlap geneAnkrd15, LOC433233
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J13.bB6Ng01-176J13.g
ACCGA004093GA004094
length485637
definitionB6Ng01-176J13.b B6Ng01-176J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,479,313 - 25,479,803)(25,322,120 - 25,322,756)
sequence
tttttttcctcccatgcagatgtgatgctagggtcgatagctgtcaactt
ggacttgagtttacatgaggaatggaggaacctgtggtggaaggaatctg
gatctcgagcggctctgaggatgaaagctgatattacaactcttgaagac
agccaggcagtggtggcacatgcttttagtcccagcacttgggaggcaga
ggcaggcggatttctgggttctaggccagcctggtctacagactgagttc
cacagggctatacaaagaaaccctgtctccaaaaaccaaaaaccaaaacc
aaccaaacaaaaacccaaaaccaccacacatacatacacaaacacaaaaa
ccacaaaaacccacaaacaaacaaaaaataaactcttgaagagcctaaag
agtgaccttgagttctaagagatgcagcagtgtctatcctgtgctatctt
ctcaccgttacccccacattgcggggggggggggg
gaattctggggatagcagtgaagaaaccctggtactttccagggctagtg
acagcgccttgttgtctgttctcatatgcattcaaacaaacttttctctc
atcagtacaaggtcagtgagtcaggacaggtcatgaagaagacatctgtg
cacatctcacagacttgtctaaattctgggaagacagttacaggggagtg
agaaaaacagaaaaactcagttttaaaactggacaagacggcatccgaag
tcattagaaaaatgcctgttaagactattgcaaacaaatggttgaaattt
aaaagtaataaaaagccctgatgagtagtggcagagatgtaggaatgtac
actttattgtatactgctgatgaaactctaagtggcccgtctccccctct
tccgaaagctgttcgggagtgccagtgaaggcggaaggaacacacactct
gacttggcaagtacactcacttccctgataccatgcatatcctcaacaag
gttaacatctacgttcatcataagcatttgggagacttcataaataaggc
tgactagaaactctccaaatgggtcaaaggtggctgtgatatcctataat
ggagtactaccactcagcattgggggtgggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25479313_25479803
seq2: B6Ng01-176J13.b_44_534 (reverse)

seq1  CCCCCCCCCCCCCGCAATGTGGGGGTAACGGTGAGAAGATAGCACAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCGCAATGTGGGGGTAACGGTGAGAAGATAGCACAGGAT  50

seq1  AGACACTGCTGCATCTCTTAGAACTCAAGGTCACTCTTTAGGCTCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGCTGCATCTCTTAGAACTCAAGGTCACTCTTTAGGCTCTTCAA  100

seq1  GAGTTTATTTTTTGTTTGTTTGTGGGTTTTTGTGGTTTTTGTGTTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTTTTTGTTTGTTTGTGGGTTTTTGTGGTTTTTGTGTTTGTGT  150

seq1  ATGTATGTGTGGTGGTTTTGGGTTTTTGTTTGGTTGGTTTTGGTTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGGTGGTTTTGGGTTTTTGTTTGGTTGGTTTTGGTTTTTGG  200

seq1  TTTTTGGAGACAGGGTTTCTTTGTATAGCCCTGTGGAACTCAGTCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGACAGGGTTTCTTTGTATAGCCCTGTGGAACTCAGTCTGTAG  250

seq1  ACCAGGCTGGCCTAGAACCCAGAAATCCGCCTGCCTCTGCCTCCCAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTAGAACCCAGAAATCCGCCTGCCTCTGCCTCCCAAGTG  300

seq1  CTGGGACTAAAAGCATGTGCCACCACTGCCTGGCTGTCTTCAAGAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTAAAAGCATGTGCCACCACTGCCTGGCTGTCTTCAAGAGTTGT  350

seq1  AATATCAGCTTTCATCCTCAGAGCCGCTCGAGATCCAGATTCCTTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGCTTTCATCCTCAGAGCCGCTCGAGATCCAGATTCCTTCCACC  400

seq1  ACAGGTTCCTCCATTCCTCATGTAAACTCAAGTCCAAGTTGACAGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCCTCCATTCCTCATGTAAACTCAAGTCCAAGTTGACAGCTATC  450

seq1  GACCCTAGCATCACATCTGCATGGGAGGAAAAAAAGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAGCATCACATCTGCATGGGAGGAAAAAAAGAATTC  491

seq1: chr19_25322120_25322756
seq2: B6Ng01-176J13.g_65_701

seq1  GAATTCTGGGGATAGCAGTGAAGAAACCCTGGTACTTTCCAGGGCTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGATAGCAGTGAAGAAACCCTGGTACTTTCCAGGGCTAGTG  50

seq1  ACAGCGCCTTGTTGTCTGTTCTCATATGCATTCAAACAAACTTTTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCCTTGTTGTCTGTTCTCATATGCATTCAAACAAACTTTTCTCTC  100

seq1  ATCAGTACAAGGTCAGTGAGTCAGGACAGGTCATGAAGAAGACATCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTACAAGGTCAGTGAGTCAGGACAGGTCATGAAGAAGACATCTGTG  150

seq1  CACATCTCACAGACTTGTCTAAATTCTGGGAAGACAGTTACAGGGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCACAGACTTGTCTAAATTCTGGGAAGACAGTTACAGGGGAGTG  200

seq1  AGAAAAACAGAAAAACTCAGTTTTAAAACTGGACAAGACGGCATCCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAGAAAAACTCAGTTTTAAAACTGGACAAGACGGCATCCGAAG  250

seq1  TCATTAGAAAAATGCCTGTTAAGACTATTGCAAACAAATGGTTGAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGAAAAATGCCTGTTAAGACTATTGCAAACAAATGGTTGAAATTT  300

seq1  AAAAGTAATAAAAAGCCCTGATGAGTAGTGGCAGAGATGTAGGAATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATAAAAAGCCCTGATGAGTAGTGGCAGAGATGTAGGAATGTAC  350

seq1  ACTTTATTGTATACTGCTGATGAAACTCTAAGTGGCCCGTCTCCCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGTATACTGCTGATGAAACTCTAAGTGGCCCGTCTCCCCCTCT  400

seq1  TCCGAAAGCTGTTCGGGAGTGCCAGTGAAGGCGGAAGGAACACACACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAAGCTGTTCGGGAGTGCCAGTGAAGGCGGAAGGAACACACACTCT  450

seq1  GACTTGGCAAGTACACTCACTTCCCTGATACCATGCATATCCTCAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCAAGTACACTCACTTCCCTGATACCATGCATATCCTCAACAAG  500

seq1  GTTAACATCTACGTTCATCATAAGCATTTGGGAGACTTCATAAATAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCTACGTTCATCATAAGCATTTGGGAGACTTCATAAATAAGGC  550

seq1  TGACTAGAAACTCTCCAAATGGGTCAAAGGTGGCTGTGATATCCTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAAACTCTCCAAATGGGTCAAAGGTGGCTGTGATATCCTATAAT  600

seq1  GGAGTACTACCACTCAGCATTGGGGGTGGGGGAGGGG  637
      |||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTACCACTCAGCATTGGGGGTGGGGGAGGGG  637