BAC Information

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BAC

Clone NameB6Ng01-178H03
Chromosome19 (Build37)
Map Location 15,591,210 - 15,708,123
singlet/doubletdoublet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H03.bB6Ng01-178H03.g
ACCGA005432GA005433
length1,1701,066
definitionB6Ng01-178H03.b B6Ng01-178H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,706,951 - 15,708,123)(15,591,210 - 15,592,281)
sequence
gaattctattactttctttttagacttcctaacagctcacagcagcaggg
aacattcaaacttagacataaataattcagcagcactttctttgagtttc
gtaagcaatattggtttcttttcctttcttgccaccgctcccttgtcctt
tactgggaggaataaccttcctcttgcactgccatcaacctgggcagtag
catatttggggcaacagcaaagagaaattggtgataacctcagtggctac
aaccttacgtggccctcaaaggcgcttataagattccctttccattttta
tgccatatgtcacggggtttgatttttttttcctattttaaaaaatttta
atgctttattacattgtgttaccggggccatttcttccccaaagagaagt
gtgattgcaataaaggtctgacatgttttttatgaaggctcttcgctgca
agggccaggccttactgtgagagcgctgccaattttcccttgtggcattt
gtaacatagttcccaaatatattccctctcaccccttgaattgcctttta
tagttaatggattaatgaaatagaaataattatgaaaatgtgggcttaag
caccaagaggaagagaagaacctgcctcaatttcatcaatctgcaacgaa
ctctttccttttatagattgcctgtcaactaaaaattcatttagaatgct
gcatgactcagaaagattttgcacttctttaaaaggaagacacgtttttc
tcagaagataaagctttatttctgggtattttttggttttataggtacca
gaactgtttcctcttgccccgctctcccctcctctttcttggtctccagt
cctctcctcttctctccctcccctctctggatgcttttctttttcttttc
ctctttttctttcctttctgtgttgaagattgaacctagggcctcacaca
ttacaagacaaatttcctatccctgaagtgtatcctctatacctgttttt
tcctcttcctttcttccatcttcctatgatttctgtgatatatgggtgac
ttctggtggtagaaattccagtagagaacttggttggagacaagatagag
accatccatgaccattacaatgttttttccggaagaccatcaacaggcca
gtgtgggttgtaccagtgtg

gaattccttgccagaacgctcatcagacactcagccgaactcatctcttc
ctcctccgcttccctccctcagtctggttatttatagagatcacaggtga
atcggggaaattattacagcgcaatgactgctgaaaggctagaagctaaa
gaagatggattaccatggctctgacatgatttgtatggatttccaaaatt
aagctgttcggagtgaccaccctcctcccacccagaccttcgcatctgcc
ccggcgataaccttcatctgcacttgggagtccaggaagctgggcacgtt
tcccattactttcaagcgagtgtgtagggttcttctggcccctcagtaat
agcagggctgctggtgaacagggtgataaacacccactgagagggataca
gcgtgaaaagatctcatcacctgccattagctcccgatgaataatgcagc
attttcctggcaggtgtcaggggtgggagggagaagggctcccctgaatg
ttctggtgggcacttcagcagctagtaagagacaagagcaacagatgcat
gtgacagaattacacaagccattgtgttgtaaaagaaaggacaattttac
tccagtctcccctgccggtttcttttctttctttctgcaccctgacagtg
aaggcaggcaaatgtgcctttcccctagacttgaaatgctctatatcctg
tccctttgcaaagggatagcttctctctgctttcagttgcctcaggtttg
tataccttgatcagggttttgcatttatgggtctttcttgtgttttcatt
aaattctacagcttaggttaatagaaatgtggaaacacagaaaagtcacc
atctctctgtccatctgtacccagctgtgcatcacatgcagacacatcca
ctctgtaatttggaacaagtcatggttggctactagctagttgtcttttg
aagaagctgcaccaaggagatgagagcagcccacacaaccccaaaagcag
acctgactgcctccttgcttcttcacacgtgcacatacaacattcagctc
gcctctctcttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15706951_15708123
seq2: B6Ng01-178H03.b_42_1211 (reverse)

seq1  CACACTTGTTACAA-CCACACTG--CTGTTTGATTTGTCTT-CTGAAAAA  46
      ||||| || ||||| ||||||||  ||| |||| | ||||| | ||||||
seq2  CACAC-TGGTACAACCCACACTGGCCTG-TTGA-TGGTCTTCCGGAAAAA  47

seq1  ACATTGTAATGGTCATGGATGGTCTTCTTATCTTTGTCT-CAACCCAGTT  95
      |||||||||||||||||||||||||   |||| |||||| ||||| ||  
seq2  ACATTGTAATGGTCATGGATGGTCT--CTATC-TTGTCTCCAACCAAG--  92

seq1  TTCTCTACTGGAATTTCTACCA-CAG-AGTCACCCATTAATAATCACAGA  143
      |||||||||||||||||||||| ||| ||||||||||  || ||||||||
seq2  TTCTCTACTGGAATTTCTACCACCAGAAGTCACCCAT--AT-ATCACAGA  139

seq1  AATCATAGGAAGATGGAAGAAAGGAAGAGAAAAAAACAGGTATAGA-GAT  192
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  AATCATAGGAAGATGGAAGAAAGGAAGAGGAAAAAACAGGTATAGAGGAT  189

seq1  ACACTTCAGTGATAGGAAATTTGTCTTGTAATGTGTGAGGCCCTAGGTTC  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGGGATAGGAAATTTGTCTTGTAATGTGTGAGGCCCTAGGTTC  239

seq1  AATCTTCAACACAGAAAGGAAAGAAAAAGAGGAAAAGAAAAAGAAAAGCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAACACAGAAAGGAAAGAAAAAGAGGAAAAGAAAAAGAAAAGCA  289

seq1  TCCAGAGAGGGGAGGGAGAGAAGAGGAGAGGACTGGAGACCAAGAAAGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGGGGAGGGAGAGAAGAGGAGAGGACTGGAGACCAAGAAAGAG  339

seq1  GAGGGGAGAGCGGGGCAAGAGGAAACAGTTCTGGTACCTATAAAACCAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGAGCGGGGCAAGAGGAAACAGTTCTGGTACCTATAAAACCAAA  389

seq1  AAATACCCAGAAATAAAGCTTTATCTTCTGAGAAAAACGTGTCTTCCTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCCAGAAATAAAGCTTTATCTTCTGAGAAAAACGTGTCTTCCTTT  439

seq1  TAAAGAAGTGCAAAATCTTTCTGAGTCATGCAGCATTCTAAATGAATTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGTGCAAAATCTTTCTGAGTCATGCAGCATTCTAAATGAATTTT  489

seq1  TAGTTGACAGGCAATCTATAAAAGGAAAGAGTTCGTTGCAGATTGATGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACAGGCAATCTATAAAAGGAAAGAGTTCGTTGCAGATTGATGAA  539

seq1  ATTGAGGCAGGTTCTTCTCTTCCTCTTGGTGCTTAAGCCCACATTTTCAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGCAGGTTCTTCTCTTCCTCTTGGTGCTTAAGCCCACATTTTCAT  589

seq1  AATTATTTCTATTTCATTAATCCATTAACTATAAAAGGCAATTCAAGGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCTATTTCATTAATCCATTAACTATAAAAGGCAATTCAAGGGG  639

seq1  TGAGAGGGAATATATTTGGGAACTATGTTACAAATGCCACAAGGGAAAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGAATATATTTGGGAACTATGTTACAAATGCCACAAGGGAAAAT  689

seq1  TGGCAGCGCTCTCACAGTAAGGCCTGGCCCTTGCAGCGAAGAGCCTTCAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGCTCTCACAGTAAGGCCTGGCCCTTGCAGCGAAGAGCCTTCAT  739

seq1  AAAAAACATGTCAGACCTTTATTGCAATCACACTTCTCTTTGGGGAAGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACATGTCAGACCTTTATTGCAATCACACTTCTCTTTGGGGAAGAA  789

seq1  ATGGCCCCGGTAACACAATGTAATAAAGCATTAAAATTTTTTAAAATAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCGGTAACACAATGTAATAAAGCATTAAAATTTTTTAAAATAGG  839

seq1  AAAAAAAAATCAAACCCCGTGACATATGGCATAAAAATGGAAAGGGAATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCAAACCCCGTGACATATGGCATAAAAATGGAAAGGGAATC  889

seq1  TTATAAGCGCCTTTGAGGGCCACGTAAGGTTGTAGCCACTGAGGTTATCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGCGCCTTTGAGGGCCACGTAAGGTTGTAGCCACTGAGGTTATCA  939

seq1  CCAATTTCTCTTTGCTGTTGCCCCAAATATGCTACTGCCCAGGTTGATGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCTCTTTGCTGTTGCCCCAAATATGCTACTGCCCAGGTTGATGG  989

seq1  CAGTGCAAGAGGAAGGTTATTCCTCCCAGTAAAGGACAAGGGAGCGGTGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAAGAGGAAGGTTATTCCTCCCAGTAAAGGACAAGGGAGCGGTGG  1039

seq1  CAAGAAAGGAAAAGAAACCAATATTGCTTACGAAACTCAAAGAAAGTGCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGGAAAAGAAACCAATATTGCTTACGAAACTCAAAGAAAGTGCT  1089

seq1  GCTGAATTATTTATGTCTAAGTTTGAATGTTCCCTGCTGCTGTGAGCTGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTATTTATGTCTAAGTTTGAATGTTCCCTGCTGCTGTGAGCTGT  1139

seq1  TAGGAAGTCTAAAAAGAAAGTAATAGAATTC  1173
      |||||||||||||||||||||||||||||||
seq2  TAGGAAGTCTAAAAAGAAAGTAATAGAATTC  1170


seq1: chr19_15591210_15592281
seq2: B6Ng01-178H03.g_66_1131

seq1  GAATTCCTTGCCAGAACGCTCATCAGACACTCAGCCGAACTCATCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCCAGAACGCTCATCAGACACTCAGCCGAACTCATCTCTTC  50

seq1  CTCCTCCGCTTCCCTCCCTCAGTCTGGTTATTTATAGAGATCACAGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCGCTTCCCTCCCTCAGTCTGGTTATTTATAGAGATCACAGGTGA  100

seq1  ATCGGGGAAATTATTACAGCGCAATGACTGCTGAAAGGCTAGAAGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGGAAATTATTACAGCGCAATGACTGCTGAAAGGCTAGAAGCTAAA  150

seq1  GAAGATGGATTACCATGGCTCTGACATGATTTGTATGGATTTCCAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGATTACCATGGCTCTGACATGATTTGTATGGATTTCCAAAATT  200

seq1  AAGCTGTTCGGAGTGACCACCCTCCTCCCACCCAGACCTTCGCATCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTCGGAGTGACCACCCTCCTCCCACCCAGACCTTCGCATCTGCC  250

seq1  CCGGCGATAACCTTCATCTGCACTTGGGAGTCCAGGAAGCTGGGCACGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGATAACCTTCATCTGCACTTGGGAGTCCAGGAAGCTGGGCACGTT  300

seq1  TCCCATTACTTTCAAGCGAGTGTGTAGGGTTCTTCTGGCCCCTCAGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTACTTTCAAGCGAGTGTGTAGGGTTCTTCTGGCCCCTCAGTAAT  350

seq1  AGCAGGGCTGCTGGTGAACAGGGTGATAAACACCCACTGAGAGGGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTGCTGGTGAACAGGGTGATAAACACCCACTGAGAGGGATACA  400

seq1  GCGTGAAAAGATCTCATCACCTGCCATTAGCTCCCGATGAATAATGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAAAAGATCTCATCACCTGCCATTAGCTCCCGATGAATAATGCAGC  450

seq1  ATTTTCCTGGCAGGTGTCAGGGGTGGGAGGGAGAAGGGCTCCCCTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGGCAGGTGTCAGGGGTGGGAGGGAGAAGGGCTCCCCTGAATG  500

seq1  TTCTGGTGGGCACTTCAGCAGCTAGTAAGAGACAAGAGCAACAGATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGGGCACTTCAGCAGCTAGTAAGAGACAAGAGCAACAGATGCAT  550

seq1  GTGACAGAATTACACAAGCCATTGTGTTGTAAAAGAAAGGACAATTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAATTACACAAGCCATTGTGTTGTAAAAGAAAGGACAATTTTAC  600

seq1  TCCAGTCTCCCCTGCCGGTTTCTTTTCTTTCTTTCTGCACCCTGACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTCCCCTGCCGGTTTCTTTTCTTTCTTTCTGCACCCTGACAGTG  650

seq1  AAGGCAGGCAAATGTGCCTTTCCCCTAGACTTGAAATGCTCTATATCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGCAAATGTGCCTTTCCCCTAGACTTGAAATGCTCTATATCCTG  700

seq1  TCCCTTTGCAAAGGGATAGCTTCTCTCTGCTTTCAGTTGCCTCAGGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGCAAAGGGATAGCTTCTCTCTGCTTTCAGTTGCCTCAGGTTTG  750

seq1  TATACCTTGATCAGGGTTTTGCATTTATGGGTCTTTCTTGTGTTTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTGATCAGGGTTTTGCATTTATGGGTCTTTCTTGTGTTTTCATT  800

seq1  AAATTCTACAAGCTTAGGTTAATAGAAATGTGGAAACACAGAAAAGTCAC  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAC-AGCTTAGGTTAATAGAAATGTGGAAACACAGAAAAGTCAC  849

seq1  CATCTCTCTGTCCATCTGTACCCAGCTGTGCATCACATGCAGACACATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTGTCCATCTGTACCCAGCTGTGCATCACATGCAGACACATCC  899

seq1  ACTCTGTAATTTGGAACCAAGTCAATGGTTGGCTACTAGGCTAGTTGTCT  950
      |||||||||||||||| |||||| |||||||||||||| |||||||||||
seq2  ACTCTGTAATTTGGAA-CAAGTC-ATGGTTGGCTACTA-GCTAGTTGTCT  946

seq1  TT--GAGAAGCTGCACCAAGGAGATGAGAGCAG-CCACACAACCCCAAAA  997
      ||   |||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGAAGAAGCTGCACCAAGGAGATGAGAGCAGCCCACACAACCCCAAAA  996

seq1  AGGCAGAACTGACTGCCTCC-TGCTTCTTCACAACGTGCACATACAAACA  1046
        ||||| |||||||||||| ||||||||||| |||||||||||| ||||
seq2  --GCAGACCTGACTGCCTCCTTGCTTCTTCAC-ACGTGCACATAC-AACA  1042

seq1  TTCAGCTCGCTCTCTCTCTCTCTCTC  1072
      |||||||||| |||||||| ||||||
seq2  TTCAGCTCGC-CTCTCTCT-TCTCTC  1066


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