BAC Information

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BAC

Clone NameB6Ng01-178L07
Chromosome19 (Build37)
Map Location 31,067,459 - 31,068,483
singlet/doubletsinglet
Overlap genePrkg1
Upstream geneTrpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995
Downstream geneCstf2t, 8430431K14Rik, 1810073H04Rik, Asah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178L07.bB6Ng01-178L07.g
ACCGA005617GA005618
length1,0621,022
definitionB6Ng01-178L07.b B6Ng01-178L07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcccagaatttcgattatctgcttttgcattgcgttggaggtgg
tcaaaaatttatttgtctgcattgcgagttatggactcatgcacaactag
gtctaaagatgtctcctgaatcctataagggaaccgccatgcccattgga
ctggcttgggccctgttttaattacaaacatctctttacatcaataacac
aacacaagtctcatgaaaatcattgatttcagaattgctgttttgatggc
ggaagtaaacgtgtttattgttttgatcttttcatttcacaagggggatc
cggttgatatcttctaaccgtgtcactgagtgactatgatcccatgggcc
ccgggttatggggagggtcgcagagatcagagagggcacccaacacccag
agctgaagtataaactcacactgcttacctcacaggatgctaaggagaaa
tattttaatcatcattacaactatattcagaaaaaattaaaatgccatgc
aaatgccaggtggtacctcctttcagatcataaacatgatcacctggagt
cactgatgtttgtcatgagacaaaatagttcatagagctcagatatcttc
aaattggtcattagacacgtagcaaggtggccaataaatcacacgtccac
agaaacacgaatatggcttcctaacaggcgctctcattcttcccaaagga
ataagctcagtcactgtcgttctctacacactcagttttgttcttttaag
attcagattttgtcatctgactttcttcagactgatcctatcagcaaagt
ataaaaggtttactcacttgcatgtttgaaaacaagttgtcagagccatg
aaatccacttccacaatatttcctctctgatgggattcctaaattttgac
atatataaattaataatatggattttcatccttggacaaaacttcagccc
cctgcttattttccatcataaagaataagtggcttttgttaaatgaacat
caacctaaatacaggcacctttgcctcctaaaccttcttggagtatttat
tctttataccat
gaattccagatgctgactgcctttgaattgggtgctgaggaactggtttt
cctcccctgatgggcagaagagggacaggaacgggggggcgatcaagacc
cttcacttttcctatcttctcctggtgacctacctagatacttatctgct
tgccctcatccctccccgctcccacgcccgataacttgacgattactcat
ggagactcagatactgctgtagacgttggaattgtttaataaatggatac
caaagatgatggatgctatagggtagattcaagttctccccacatgccta
acaaaagcttcagggcccctgtgatgtagttataatttgctaaattgcct
ttatgtagagattgctgctttattattatttctgttatatggaacccccc
caaagtctaaattatttcatttgtacatttaaaaattaaaatatgattat
aatatgattcataaatgatctgattgttgccagatgagaattatttcttg
ggagcctctttttctttttggccgatactatttccttcctgtactatctt
tcatgtgtacctttaaatgggcggtcagggacataaaagcaataggaaac
ttcttggtaggtaataatattatagcagaaaaccagggaccacattttgc
cactgagcatagctggctttttgatgaaatgggacagcttaatgctatta
gctttaaatgtgtgtaaaaggttaatcacgttcgtacctctcatgaataa
ctcatctcttttacaaggtgtcgttcacaagtgaaattctctaattaatt
tccccctccttgctttgttttctttctccagctcttgtaaatgtgaaact
ctgggccatcgatcgacaatgttttcaaacaataatgatgaggacaggac
tcatcaagcatacccgagtacatggaatttttaaaaggtaggacactttt
ttgttctttccattttggaagacttggtgctcttgagaatgcacaatttt
tggtgccttatctcggttcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31067459_31068483
seq2: B6Ng01-178L07.g_62_1083 (reverse)

seq1  ATTGAGACCGAGATAAAGGCA-CAAAAATGCTGCA-TCTCAAAGAGGCAC  48
      ||||| |||||||| |||||| |||||||  |||| |||| |||| ||||
seq2  ATTGA-ACCGAGAT-AAGGCACCAAAAATTGTGCATTCTC-AAGA-GCAC  46

seq1  CAAAGTC-TCCAAAATGGAAAGAAACAAAAAAGTGTCCTACCTTTTTAAA  97
      | ||||| |||||||||||||| ||||||||||||||||||| |||||||
seq2  C-AAGTCTTCCAAAATGGAAAG-AACAAAAAAGTGTCCTACC-TTTTAAA  93

seq1  AATTCCATGTACTC-GGTATGCTTGATGAGTCCTGTCCTCATCATTATTG  146
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATTCCATGTACTCGGGTATGCTTGATGAGTCCTGTCCTCATCATTATTG  143

seq1  TTTGAAAACATTGTCGATCGATGGCCCAGAGTTTCACATTTACAAGAGCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACATTGTCGATCGATGGCCCAGAGTTTCACATTTACAAGAGCT  193

seq1  GGAGAAAGAAAACAAAGCAAGGAGGGGGAAATTAATTAGAGAATTTCACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAAAACAAAGCAAGGAGGGGGAAATTAATTAGAGAATTTCACT  243

seq1  TGTGAACGACACCTTGTAAAAGAGATGAGTTATTCATGAGAGGTACGAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACGACACCTTGTAAAAGAGATGAGTTATTCATGAGAGGTACGAAC  293

seq1  GTGATTAACCTTTTACACACATTTAAAGCTAATAGCATTAAGCTGTCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAACCTTTTACACACATTTAAAGCTAATAGCATTAAGCTGTCCCA  343

seq1  TTTCATCAAAAAGCCAGCTATGCTCAGTGGCAAAATGTGGTCCCTGGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAAAAAGCCAGCTATGCTCAGTGGCAAAATGTGGTCCCTGGTTT  393

seq1  TCTGCTATAATATTATTACCTACCAAGAAGTTTCCTATTGCTTTTATGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATAATATTATTACCTACCAAGAAGTTTCCTATTGCTTTTATGTC  443

seq1  CCTGACCGCCCATTTAAAGGTACACATGAAAGATAGTACAGGAAGGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCGCCCATTTAAAGGTACACATGAAAGATAGTACAGGAAGGAAAT  493

seq1  AGTATCGGCCAAAAAGAAAAAGAGGCTCCCAAGAAATAATTCTC-CCTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AGTATCGGCCAAAAAGAAAAAGAGGCTCCCAAGAAATAATTCTCATCTGG  543

seq1  CAACAATCAGATTATTAATGACTCATATTATAATTATATTTTAATTATAA  595
      |||||||||||| ||| |||| |||||||||||| ||||||||||| | |
seq2  CAACAATCAGATCATTTATGAATCATATTATAATCATATTTTAATTTTTA  593

seq1  AATGTACAAATGAAATAATTTCTACTTTGGGGGGATTCCATATAACAGAA  645
      |||||||||||||||||||||  ||||||||||| |||||||||||||||
seq2  AATGTACAAATGAAATAATTTAGACTTTGGGGGGGTTCCATATAACAGAA  643

seq1  ATAATAATTATGCAGCAATCTCTACATAATGCTTGTTTAACAAATTATAA  695
      |||||||| | |||||||||||||||||| |    |||| ||||||||||
seq2  ATAATAATAAAGCAGCAATCTCTACATAAAGGCAATTTAGCAAATTATAA  693

seq1  CTTGTGCACAAACTATGTAAAACTTTTATTAGGTATGTCGGTTGAATTTT  745
      ||    ||||       | || ||||| ||||| |||| ||  ||| || 
seq2  CTACATCACAGGGGCCCTGAAGCTTTTGTTAGGCATGTGGGGAGAACTTG  743

seq1  AATCTCTACTCTTACATCCACCATCTTTGGCAATGTATAATTAAA-TGTT  794
      |||||   || |  |||||| ||||||||| |     | ||||||   ||
seq2  AATCTACCCTATAGCATCCATCATCTTTGGTATCCATTTATTAAACAATT  793

seq1  GAAACTGAATACAGCAGAATCATTAAG--TACATGATTAATAGACAAATT  842
        ||| |  |||||||| |||  | ||  | ||||| |||| | ||| ||
seq2  CCAAC-GTCTACAGCAGTATC--TGAGTCTCCATGAGTAATCGTCAAGTT  840

seq1  TAAGAACAAAATAGCAGGGCTTATTGAACGCAATACTGCAAATTATCAAG  892
         |  |     ||| |||     |||  ||||  | |  || |||| ||
seq2  ATCGGGCGTGGGAGCGGGGAGGGATGAGGGCAA-GCAGATAAGTATCTAG  889

seq1  GTA---AACTA----ATGTTTTAAAAAATGAGCATATTGGGGGCTAGAGA  935
      |||    || |    | | |   |||| |||        ||| || ||  
seq2  GTAGGTCACCAGGAGAAGATAGGAAAAGTGA-------AGGGTCTTGATC  932

seq1  GCACAACAGTGAAGAACCCT-GACTGCTCTTCCAGGGG-----ACCCAGG  979
      || |  | ||      ||||   |||| | | ||||||     | |||| 
seq2  GCCCCCCCGTTCCTGTCCCTCTTCTGCCCAT-CAGGGGAGGAAAACCAGT  981

seq1  TTTGAGCCTCAGCACCCA----TATGGCCGCTGACTAGCATCTGGAATTC  1025
      |     ||||||||||||     | ||| |      ||||||||||||||
seq2  T-----CCTCAGCACCCAATTCAAAGGCAG----TCAGCATCTGGAATTC  1022