BAC Information

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BAC

Clone NameB6Ng01-179E02
Chromosome19 (Build37)
Map Location 5,158,567 - 5,159,622
singlet/doubletsinglet
Overlap genePacs1
Upstream geneRps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179E02.bB6Ng01-179E02.g
ACCGA006027GA006028
length1,1921,037
definitionB6Ng01-179E02.b B6Ng01-179E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacctgcctctgcctcttgattgctagaattaaagccaccactat
actttgctcataattttattttttaaagctatcttttacattgctgggtc
aatcagagtccctcaacccgagggagaaatcagggtcccagtattcaggt
gggcaaggagtcagcaagttacaaacaggcacaaacacaagagagtgttg
gatctgaatgtaatttctcaaagcaagcatcagacttatattacagaaga
aaattaggaagttaggtgacacgtcagctaaggtacactgaggttactcg
atgcataatgactctttacacaaaacacaaaaatgtgtacataaagactg
gcaggaaccaggcaatgtaacaactgggagtcagccctatctaaggtcag
ccatattcttagaagctgggtgtgaggtctttacacccccggggcaaggg
ctctcacgcccaagccatagttctaattctaattgattgtgtaacccacc
accagccggctcctagtaagtagctagctgtgctattcttctgggcttgt
gaaagtgtgcactcgggagggctccactcttgctaaccttttcataagta
atgcaatactctagttcctcctaaccacagcccaggcttcttccgaaacc
attgtaaattcttgtatatgggagtgactcagctgttattctaagtgttt
tgtgagggacctccatttaccagaggagcccacaaactttcctctattag
gtaatgtagtctgccatacatgactataataagaattctaaacttacttt
gttaaacttgccctgaaatctccaactctatctagtagattgcaatgtgt
gatttctttcactatctctctttcaacactggaggcatttcatctgaata
agtaatgtttttacaaaattccaagctcagggtctgctcaaagactgcct
aggacattgggacacgagtgaaagccaggaagcaatgttcaatctaactt
agctatttgtcaaatcattccttgggggcactatataaacatactaaaga
aaagcacacagaacctttcacactatttcagacaatctgaaatacatctg
tgtttatggacgctaggactcaaggaaacagtccatgactttttgctcag
gactgcagccagccttttggaacctgtttcacgcagaaatct
gaattctggggacttttatataaaagctagggcctcaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaagctagggcctcaagagatgggtgggttgacggg
cggtggtggcgcacgcctttaatcccagcacttgagaggcagaggcaggc
agatttctgagttccaggacagccagggctacacagaaaaagaaaccctg
tctcaaaaaaaaaaaaaaaaaaaaatccaagaatccacaccacagtcata
aaagtcatggaaaatatggcaaccaccacagactgatggagaccaaagag
ctatgaaaaaaaaggtaaccaaccaactcctagatcgggatgtaggtctt
gggaaggtcactgagacattctgcactgtgaggttggggactgagggcta
gacagaaccttgaattaatgttactaccctgactgtggcaggggaatggg
gcttatgtaggacagtatcctcgtgcttaggaaattaacatggtatagta
ttaatgtgacatgaggcttcacgtctgcaagagtcaaactgctcaggaaa
aaaacctccacaaaacaacagccaaaatatacagagatactataaaacca
taataatatgttatcaagttaaatatttgcgtgaatctggtatatgggaa
ttgtttacattattcttactaaaactaacttaaaacacataacacacata
tattaaagttagtcatagtgatgcaactacagttaccagttacatgggaa
gctggaatggaagatctttcgagtctaggagtttgggcctaaactggcca
accacagacagaaccatctcaaaagacaaaggcagctagagagaaagctt
agtggttaggaacatatgttcttaactagatttggggttcgattctcaga
acctatatgttggttcacaaccatctgcagtctagttcagatgcatacat
tggaacaaacactcatatacatagtaagataataattcctaaaatcaaat
gaggataaaagagtaaagcgcagtggtgtgcatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5158567_5159622
seq2: B6Ng01-179E02.g_63_1099

seq1  GAATTCTGGGGACTTTTATATAAAAGCTAGGGCCTCAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGACTTTTATATAAAAGCTAGGGCCTCAAAAAAAAAAAAAA  50

seq1  AAAAAAAAAAAAAAAAAGCTAGGGCCTCAAGAGATGGGTGGGTTGACGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGCTAGGGCCTCAAGAGATGGGTGGGTTGACGGG  100

seq1  CGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGC  150

seq1  AGATTTCTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAAGAAACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAAGAAACCCTG  200

seq1  TCTCAAAAAAAAAAAAAAAAAAGAATCCAAGAATCCACATCACAGTCATA  250
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TCTCAAAAAAAAAAAAAAAAAAAAATCCAAGAATCCACACCACAGTCATA  250

seq1  AAAGTCATGGAAAATATGGCAACCACCACAGACTGATGGAGACCAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATGGAAAATATGGCAACCACCACAGACTGATGGAGACCAAAGAG  300

seq1  CTATGAAAAAAAAGGTAACCAACCAACTCCTAGATCGGGATGTAGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAAAAAAGGTAACCAACCAACTCCTAGATCGGGATGTAGGTCTT  350

seq1  GGGAAGGTCACTGAGACATTCTGCACTGTGAGGTTGGGGACTGAGGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTCACTGAGACATTCTGCACTGTGAGGTTGGGGACTGAGGGCTA  400

seq1  GACAGAACCTTGAATTAATGTTACTACCCTGACTGTGGCAGGGGAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACCTTGAATTAATGTTACTACCCTGACTGTGGCAGGGGAATGGG  450

seq1  GCTTATGTAGGACAGTATCCTCGTGCTTAGGAAATTAACATGGTATAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTAGGACAGTATCCTCGTGCTTAGGAAATTAACATGGTATAGTA  500

seq1  TTAATGTGACATGAGGCTTCACGTCTGCAAGAGTCAAACTGCTCAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGACATGAGGCTTCACGTCTGCAAGAGTCAAACTGCTCAGGAAA  550

seq1  AAAACCTCCACAAAACAACAGCCAAAATATACAGAGATACTATAAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCCACAAAACAACAGCCAAAATATACAGAGATACTATAAAACCA  600

seq1  TAATAATATGTTATCAAGTTAAATATTTGCGTGAATCTGGTATATGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATGTTATCAAGTTAAATATTTGCGTGAATCTGGTATATGGGAA  650

seq1  TTGTTTACATTATTCTTACTAAAACTAACTTAAAACACATAACACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACATTATTCTTACTAAAACTAACTTAAAACACATAACACACATA  700

seq1  TATTAAAGTTAGTCATAGTGATGCAACTACAGTTACCAGTTACATGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTTAGTCATAGTGATGCAACTACAGTTACCAGTTACATGGGAA  750

seq1  GCTGGAATGGAAGATCTTTCGAGTCTAGGAGTTTGGGCCTAAACTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATGGAAGATCTTTCGAGTCTAGGAGTTTGGGCCTAAACTGGCCA  800

seq1  ACCACAGACAGAACCATCTCAAAAGACAAAGGCAGCTAGAGAGAAAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGACAGAACCATCTCAAAAGACAAAGGCAGCTAGAGAGAAAGCTT  850

seq1  AGTGGTTAGGAACATATGTTCTTAACTAGATTT-GGGTTCGATTCTCAGA  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTGGTTAGGAACATATGTTCTTAACTAGATTTGGGGTTCGATTCTCAGA  900

seq1  ACCTATATGTTGGTTCACAACCATCTGCAAGTCTAGTTCCAGATTGGCAT  949
      |||||||||||||||||||||||||||| ||||||||| |||||  ||||
seq2  ACCTATATGTTGGTTCACAACCATCTGC-AGTCTAGTT-CAGAT--GCAT  946

seq1  ACATTGGAACAAAACACTCATATACATAAAGTAAGATAAATAAATCCTAA  999
      |||||||||| ||||||||||||||||  |||||||| ||||| |||| |
seq2  ACATTGGAAC-AAACACTCATATACAT--AGTAAGAT-AATAATTCCT-A  991

seq1  AAATCAAATGAAGATTAAAAAAGAGTTAAAAAGGCCGGGCAGTGGTGGTG  1049
      ||||||||||| |||   |||||||| ||       | |||||||| |||
seq2  AAATCAAATGAGGAT---AAAAGAGTAAA-------GCGCAGTGGT-GTG  1030

seq1  CATGCTT  1056
      |||||||
seq2  CATGCTT  1037