BAC Information

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BAC

Clone NameB6Ng01-180G08
Chromosome19 (Build37)
Map Location 35,595,275 - 35,596,408
singlet/doubletsinglet
Overlap geneLOC100042292
Upstream geneLipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180G08.bB6Ng01-180G08.g
ACCGA006838GA006839
length1,1621,101
definitionB6Ng01-180G08.b B6Ng01-180G08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataaactgaaatccatctttcaccctggaaaaaggtttttatgt
ggttttggtggcctacactggattatccacacctaatttttgatttgtca
acttaagcaaagaagggttcaggcaaatgtgttcaggattggtcttgaac
ctatatggcaagcctcaatccatcattcaaacctcatcctgccttaagtc
tcgcagaaggccacttggcagtgtaatgtctttttcctgagacaacccct
cccactcaatagcttccctaagaagctgctttgttctgctaaaaagtggt
ggagggtacttgtacaaaaatccaaggaccactatcacatctcattgtgt
ttcctcttgtgtcactcctttcttaaactatgtataatcttcctatatta
ccatacaagtctaattgccaggtagaaatgaaccccacctagtttcccac
tgaactcacactaataaagattgtatccctatcaccccactaacactgtt
tttctggatttcagatcagcaatcatcatcttgctaaatataattactgt
ctagttacatcacctgattacttcttccttgcattactgtctttttagat
gctaattagccaaacccttttagtttccctcctacattagtgactctttt
gcccactcatgttttgttttttttctcctcacatccctgacctttgaaca
tcagtattttctgttcttacccactgaaattgtgttcattctcatgactt
tcaagcatttattatctgatggcttttcagcttttatcctatcatatcct
tctctcaagtcaacatttattaatttatttatcttctatgagcctattat
acccatttcacaccccacagcatgctagatttaacagcatcccatactta
ataaaacagaacacttcatcttttacttccgattctaaatagatccttta
tgtgttttccagtttctctcttttctctgagtgcattcttcctactccta
atccaaaggtttgattgtgtgactttgccttagcccaaggaaataccaat
gtcaataatgcaatagttctatgcaacagtccaaggatgcattggctccc
atccactggcctttttattgtgctctcagcttgctttaactccaggtaaa
ggggattctata
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaaacacccatggaaggagttacagagacggagtttggagctgagatg
aaaggatggaccatgtagagactgccatagccagggatccacccccataa
tcagcatccaaacgctgacacccattgcatacactagcaagattttatcg
aaaggacgcagatgtagctgtcctcttgtgagactatgccggggccaaca
aacacagaagtgggatgctcacagttcagctaatggatggatcatagggc
ctcccaatgggaggagctagagaaaagtagccaaggaagctaaagggatt
ctgcatccttataagtggaacaacacttatggagctaaccagtaactccc
ggagtctcttttgaccttcttgtctgcctttatggtattcaaatgaattg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35595275_35596408
seq2: B6Ng01-180G08.b_32_1193

seq1  GAATTCATAAACTGAAATCCATCTTTCACCCTGGAAAAAGGTTTTTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACTGAAATCCATCTTTCACCCTGGAAAAAGGTTTTTATGT  50

seq1  GGTTTTGGTGGCCTACACTGGATTATCCACACCTAATTTTTGATTTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGTGGCCTACACTGGATTATCCACACCTAATTTTTGATTTGTCA  100

seq1  ACTTAAGCAAAGAAGGGTTCAGGCAAATGTGTTCAGGATTGGTCTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGCAAAGAAGGGTTCAGGCAAATGTGTTCAGGATTGGTCTTGAAC  150

seq1  CTATATGGCAAGCCTCAATCCATCATTCAAACCTCATCCTGCCTTAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGCAAGCCTCAATCCATCATTCAAACCTCATCCTGCCTTAAGTC  200

seq1  TCGCAGAAGGCCACTTGGCAGTGTAATGTCTTTTTCCTGAGACAACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGAAGGCCACTTGGCAGTGTAATGTCTTTTTCCTGAGACAACCCCT  250

seq1  CCCACTCAATAGCTTCCCTAAGAAGCTGCTTTGTTCTGCTAAAAAGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCAATAGCTTCCCTAAGAAGCTGCTTTGTTCTGCTAAAAAGTGGT  300

seq1  GGAGGGTACTTGTACAAAAATCCAAGGACCACTATCACATCTCATTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTACTTGTACAAAAATCCAAGGACCACTATCACATCTCATTGTGT  350

seq1  TTCCTCTTGTGTCACTCCTTTCTTAAACTATGTATAATCTTCCTATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTGTGTCACTCCTTTCTTAAACTATGTATAATCTTCCTATATTA  400

seq1  CCATACAAGTCTAATTGCCAGGTAGAAATGAACCCCACCTAGTTTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAGTCTAATTGCCAGGTAGAAATGAACCCCACCTAGTTTCCCAC  450

seq1  TGAACTCACACTAATAAAGATTGTATCCCTATCACCCCACTAACACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCACACTAATAAAGATTGTATCCCTATCACCCCACTAACACTGTT  500

seq1  TTTCTGGATTTCAGATCAGCAATCATCATCTTGCTAAATATAATTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGATTTCAGATCAGCAATCATCATCTTGCTAAATATAATTACTGT  550

seq1  CTAGTTACATCACCTGATTACTTCTTCCTTGCATTACTGTCTTTTTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACATCACCTGATTACTTCTTCCTTGCATTACTGTCTTTTTAGAT  600

seq1  GCTAATTAGCCAAACCCTTTTAGTTTCCCTCCTACATTAGTGACTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTAGCCAAACCCTTTTAGTTTCCCTCCTACATTAGTGACTCTTTT  650

seq1  GCCCACTCATGTTTTGTTTTTTTTCTCCTCACATCCCTGACCTTTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTCATGTTTTGTTTTTTTTCTCCTCACATCCCTGACCTTTGAACA  700

seq1  TCAGTATTTTCTGTTCTTTTTCTCCTGAAATTGTGTTCATTCTCATGACT  750
      |||||||||||||||| ||  |  ||||||||||||||||||||||||||
seq2  TCAGTATTTTCTGTTC-TTACCCACTGAAATTGTGTTCATTCTCATGACT  749

seq1  TTCAAGCATTTATTATCTGATGGC-TTTCAGCTTTTATCCTATCATATCC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCAAGCATTTATTATCTGATGGCTTTTCAGCTTTTATCCTATCATATCC  799

seq1  TTCTCTCAAGTCAACATTTATTAATTTATTTATCTTCTATGAGCCTATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAAGTCAACATTTATTAATTTATTTATCTTCTATGAGCCTATTA  849

seq1  TACCCA-TTCACA-CCCACAGCATGCTAGATTTAACAGCAT-CCATACTT  896
      |||||| |||||| ||||||||||||||||||||||||||| ||||||||
seq2  TACCCATTTCACACCCCACAGCATGCTAGATTTAACAGCATCCCATACTT  899

seq1  AAT-AAACAGAACACTTCATC-TTTACTTCCGATTCTAAATAGATCCTTT  944
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATAAAACAGAACACTTCATCTTTTACTTCCGATTCTAAATAGATCCTTT  949

seq1  ATGTG-TTTCCAGTTTCTCTCTTTTCTCTGAGTGCATTCTTCCTACTCCT  993
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTCCAGTTTCTCTCTTTTCTCTGAGTGCATTCTTCCTACTCCT  999

seq1  -ATCCAAAGGTTTGAATGTGTGAC-TTGCCTTAG-CCAAAGAAATACC-A  1039
       |||||||||||||| |||||||| ||||||||| |||| |||||||| |
seq2  AATCCAAAGGTTTGATTGTGTGACTTTGCCTTAGCCCAAGGAAATACCAA  1049

seq1  TGTCA--TATGCAA-AGTTCTA-GCAACAGTTCCAAGATGCAT--GGTTC  1083
      |||||   |||||| ||||||| |||||||| | | |||||||  | | |
seq2  TGTCAATAATGCAATAGTTCTATGCAACAGTCCAAGGATGCATTGGCTCC  1099

seq1  CAT-CACTG---CTTTTAT----GTCTCAGC-TGC-TTAACTCCAG--TA  1121
      ||| |||||    ||||||     ||||||| ||| ||||||||||   |
seq2  CATCCACTGGCCTTTTTATTGTGCTCTCAGCTTGCTTTAACTCCAGGTAA  1149

seq1  AGGGGTTTCTATA  1134
      ||||| |||||||
seq2  AGGGGATTCTATA  1162