BAC Information

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BAC

Clone NameB6Ng01-181B03
Chromosome19 (Build37)
Map Location 44,383,086 - 44,560,079
singlet/doubletdoublet
Overlap geneScd4, Scd1
Upstream geneLOC545291, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2
Downstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181B03.bB6Ng01-181B03.g
ACCGA007330GA007331
length1,1041,132
definitionB6Ng01-181B03.b B6Ng01-181B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,558,969 - 44,560,079)(44,383,086 - 44,384,210)
sequence
gaattctcatctaaaatgtgctcttaagttttgaattttttctttttaac
cagagtgtttacttactagtttattgcctcctgggttgtatggaaactct
tgcttccccatctgtactcatttgttcttcagtgtatactgaatctgaag
ttgtccctttgagggagaggcctcgggaagttagactgcaaggcaggatg
ccttataacagcatcagtgtgctagcaccaaacagaagtccccttggggt
taggcacagccacgccttcaggtgactgcaatcctggctagcattatcca
ctgtgatttcatgagaacctctgagctaaggccaccctagactgccctaa
tcccatcccataaaaactgggacagacacagatatttattattggattat
tccattacgtttcagagtgctttgttatgtacctgtggataattaataca
aggaggtttgcagatatcgcatcagattcaagatgttcacatctaagcct
agcattacaaaaaccgtctcttaatgaattggggctagagagatagctcg
gtgattgaaagcagttgcttttgcagaggacccaggttcaattcccagca
ccaatatgatggttcacaagtgtctgaaacaccaattccaggggatctgt
ttctgtctggaggcatagatgtacacatagaaaaatcacccatatacata
aaataaaatgattttaaaaattaaaataaaaaagaattacatttttgttt
tattcagttttctcatggagtgaattatctctttaatatgtaaattgatg
aattatattggactgttccaatgttaaagcaagtgttggctggaattaaa
aacaatttcacatcatcaggcctgtgcacaagggtctctacccactgggc
catcttgccagccctcaactatctacattttaaagactatttacatattc
tattgtctatgtcctagctctcactcatgcccaactgctgcctttgtgtt
tgggttgttttgaatgtcactgtctgtctgtcagctttctgatgtctgct
gtgtgtctgtcagctttctgtccctctatggacactggagagttcactta
aggg
gaattcaagagacccagaatagacaaatagaaaacatgcacacgtgcaca
tacaaagatggatgaaatttattctttcaaactttcttcaaagggccatt
aataaaagtggataaatccagaccaagtggggttgaaagtagacatttac
aattaacagatacttggcaagcattcagatggctcaactggtaaagagaa
tcttctagcagagttaaacaagtgaatatccgcaggtaactgttactatt
gttggcccaccacgtcatatcacacacagctaggaactcaaatatattat
gtaaagctaaaattccctgaggagaaaacactggtgtgcacagatgataa
tttcttatgacagtagaaacaacgaccctttttaagtgttacgaattcgg
tttcgtcaaagtagaggctttaggtcttcaaaagataccatcaggtaact
gagaaggcagatggggatgtgtgagggcttagtgctgagagtctgtgaaa
tgcatgctttcattctgctgttagcaagactgagtcaaatcctgcctgga
agcaagagctgtactgctgagcaagacccacagcaaaggaacccttacag
gtcaacaacaaaaagacgacagggataccatgctacatatataatatgta
ttatggtatatatataataatacatatataataacaataaatacctgcta
ttagaaataaggcatttgagtagacattcatgaccagaagacccacagat
gggcaaaaaagacatggaaaggtacttggtattagcagccctcaaccccg
tactaagcagcgtactgaaatacctcatttccactaaaataactgtaata
aaaacataaaagtaaaaaggaagtgttgctgaggatgtgaacagacagag
acactcactcgctgcggatgaaaatctgagattgtgcgtctcctttggga
aagaagaccagccatctcccaaaatagtaagcaacaagcaggcacggatc
gcagacaccacttctaggcatccacccaaagaatgtggaaagatgtgtca
caacaaaaacttggcacatggggcctggtgagaaatggctcagtggtaag
agcacgaactgcttctcgaaagaatcctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44558969_44560079
seq2: B6Ng01-181B03.b_43_1146 (reverse)

seq1  CCCTTTAAAGTGACTTCCTCCAGTGTTCCATAAGAGGGACAGAAAGCTGA  50
      |||||  ||||||  | |||||||| ||||| ||||||||||||||||||
seq2  CCCTT--AAGTGAACT-CTCCAGTG-TCCAT-AGAGGGACAGAAAGCTGA  45

seq1  CAGACACACAGCAGACATTCAGAAAGCTGACAGACAGACAGTGGACATTC  100
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  CAGACACACAGCAGACA-TCAGAAAGCTGACAGACAGACAGT-GACATTC  93

seq1  AAAAC-ACCCAAACACAAAGGCAGCAGTTGGGCATGAGTGAGAGCTAGGA  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCAAACACAAAGGCAGCAGTTGGGCATGAGTGAGAGCTAGGA  143

seq1  CATAGAACAATAGAATATGTAAATAGTCTTTAAAAATGTAGATAGTTGAG  199
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATAG-ACAATAGAATATGTAAATAGTCTTT-AAAATGTAGATAGTTGAG  191

seq1  GGCTGGCAAGATGGCCCAGTGGGTAGAGACCCTTGTGCACAGGCCTGATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAAGATGGCCCAGTGGGTAGAGACCCTTGTGCACAGGCCTGATG  241

seq1  ATGTG-AATTGTTTTTAATTCCAGCCAACACTTGCTTTAACATTGGAACA  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATTGTTTTTAATTCCAGCCAACACTTGCTTTAACATTGGAACA  291

seq1  GTCCAATATAATTCATCAATTTACATATTAAAGAGATAATTCACTCCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATATAATTCATCAATTTACATATTAAAGAGATAATTCACTCCATG  341

seq1  AGAAAACTGAATAAAACAAAAATGTAATTCTTTTTTATTTTAATTTTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGAATAAAACAAAAATGTAATTCTTTTTTATTTTAATTTTTAA  391

seq1  AATCATTTTATTTTATGTATATGGGTGATTTTTCTATGTGTACATCTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTATTTTATGTATATGGGTGATTTTTCTATGTGTACATCTATG  441

seq1  CCTCCAGACAGAAACAGATCCCCTGGAATTGGTGTTTCAGACACTTGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGACAGAAACAGATCCCCTGGAATTGGTGTTTCAGACACTTGTGA  491

seq1  ACCATCATATTGGTGCTGGGAATTGAACCTGGGTCCTCTGCAAAAGCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATATTGGTGCTGGGAATTGAACCTGGGTCCTCTGCAAAAGCAAC  541

seq1  TGCTTTCAATCACCGAGCTATCTCTCTAGCCCCAATTCATTAAGAGACGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAATCACCGAGCTATCTCTCTAGCCCCAATTCATTAAGAGACGG  591

seq1  TTTTTGTAATGCTAGGCTTAGATGTGAACATCTTGAATCTGATGCGATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAATGCTAGGCTTAGATGTGAACATCTTGAATCTGATGCGATAT  641

seq1  CTGCAAACCTCCTTGTATTAATTATCCACAGGTACATAACAAAGCACTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACCTCCTTGTATTAATTATCCACAGGTACATAACAAAGCACTCT  691

seq1  GAAACGTAATGGAATAATCCAATAATAAATATCTGTGTCTGTCCCAGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTAATGGAATAATCCAATAATAAATATCTGTGTCTGTCCCAGTTT  741

seq1  TTATGGGATGGGATTAGGGCAGTCTAGGGTGGCCTTAGCTCAGAGGTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGATGGGATTAGGGCAGTCTAGGGTGGCCTTAGCTCAGAGGTTCT  791

seq1  CATGAAATCACAGTGGATAATGCTAGCCAGGATTGCAGTCACCTGAAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATCACAGTGGATAATGCTAGCCAGGATTGCAGTCACCTGAAGGC  841

seq1  GTGGCTGTGCCTAACCCCAAGGGGACTTCTGTTTGGTGCTAGCACACTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTGCCTAACCCCAAGGGGACTTCTGTTTGGTGCTAGCACACTGA  891

seq1  TGCTGTTATAAGGCATCCTGCCTTGCAGTCTAACTTCCCGAGGCCTCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATAAGGCATCCTGCCTTGCAGTCTAACTTCCCGAGGCCTCTCC  941

seq1  CTCAAAGGGACAACTTCAGATTCAGTATACACTGAAGAACAAATGAGTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGGACAACTTCAGATTCAGTATACACTGAAGAACAAATGAGTAC  991

seq1  AGATGGGGAAGCAAGAGTTTCCATACAACCCAGGAGGCAATAAACTAGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGAAGCAAGAGTTTCCATACAACCCAGGAGGCAATAAACTAGTA  1041

seq1  AGTAAACACTCTGGTTAAAAAGAAAAAATTCAAAACTTAAGAGCACATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACACTCTGGTTAAAAAGAAAAAATTCAAAACTTAAGAGCACATTT  1091

seq1  TAGATGAGAATTC  1111
      |||||||||||||
seq2  TAGATGAGAATTC  1104

seq1: chr19_44383086_44384210
seq2: B6Ng01-181B03.g_66_1197

seq1  GAATTCAAGAGACCCAGAATAGACAAATAGAAAACATGCACACGTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGACCCAGAATAGACAAATAGAAAACATGCACACGTGCACA  50

seq1  TACAAAGATGGATGAAATTTATTCTTTCAAACTTTCTTCAAAGGGCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGATGGATGAAATTTATTCTTTCAAACTTTCTTCAAAGGGCCATT  100

seq1  AATAAAAGTGGATAAATCCAGACCAAGTGGGGTTGAAAGTAGACATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTGGATAAATCCAGACCAAGTGGGGTTGAAAGTAGACATTTAC  150

seq1  AATTAACAGATACTTGGCAAGCATTCAGATGGCTCAACTGGTAAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAGATACTTGGCAAGCATTCAGATGGCTCAACTGGTAAAGAGAA  200

seq1  TCTTCTAGCAGAGTTAAACAAGTGAATATCCGCAGGTAACTGTTACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGCAGAGTTAAACAAGTGAATATCCGCAGGTAACTGTTACTATT  250

seq1  GTTGGCCCACCACGTCATATCACACACAGCTAGGAACTCAAATATATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCCACCACGTCATATCACACACAGCTAGGAACTCAAATATATTAT  300

seq1  GTAAAGCTAAAATTCCCTGAGGAGAAAACACTGGTGTGCACAGATGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTAAAATTCCCTGAGGAGAAAACACTGGTGTGCACAGATGATAA  350

seq1  TTTCTTATGACAGTAGAAACAACGACCCTTTTTAAGTGTTACGAATTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGACAGTAGAAACAACGACCCTTTTTAAGTGTTACGAATTCGG  400

seq1  TTTCGTCAAAGTAGAGGCTTTAGGTCTTCAAAAGATACCATCAGGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTCAAAGTAGAGGCTTTAGGTCTTCAAAAGATACCATCAGGTAACT  450

seq1  GAGAAGGCAGATGGGGATGTGTGAGGGCTTAGTGCTGAGAGTCTGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGATGGGGATGTGTGAGGGCTTAGTGCTGAGAGTCTGTGAAA  500

seq1  TGCATGCTTTCATTCTGCTGTTAGCAAGACTGAGTCAAATCCTGCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTTTCATTCTGCTGTTAGCAAGACTGAGTCAAATCCTGCCTGGA  550

seq1  AGCAAGAGCTGTACTGCTGAGCAAGACCCACAGCAAAGGAACCCTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGCTGTACTGCTGAGCAAGACCCACAGCAAAGGAACCCTTACAG  600

seq1  GTCAACAACAAAAAGACGACAGGGATACCATGCTACATATATAATATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAACAAAAAGACGACAGGGATACCATGCTACATATATAATATGTA  650

seq1  TTATGGTATATATATAATAATACATATATAATAACAATAAATACCTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTATATATATAATAATACATATATAATAACAATAAATACCTGCTA  700

seq1  TTAGAAATAAGGCATTTGAGTAGACATTCATGACCAGAAGACCCACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAAGGCATTTGAGTAGACATTCATGACCAGAAGACCCACAGAT  750

seq1  GGGCAAAAAAGACATGGAAAGGTACTTGGTATTAGCAGCCCTCAACCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAAAAGACATGGAAAGGTACTTGGTATTAGCAGCCCTCAACCCCG  800

seq1  TACTAAGCAGCGTACTGAAATACCTCATTTCCACTAAAATAACTGTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGCAGCGTACTGAAATACCTCATTTCCACTAAAATAACTGTAATA  850

seq1  AAAACATAAAAGTAAAAAGGAAGTGTTGCTGAGGATGTGAACAGACAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAAAGTAAAAAGGAAGTGTTGCTGAGGATGTGAACAGACAGAG  900

seq1  ACACTCACTCGCTGCGGATGAAAATCTGAGATTGTGCGTCTCCTTT-GGA  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACTCACTCGCTGCGGATGAAAATCTGAGATTGTGCGTCTCCTTTGGGA  950

seq1  AAGAAGACCAGCCATCTCCC-AAATAGTTAGCAACAAGCAGGCACGGATC  998
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  AAGAAGACCAGCCATCTCCCAAAATAGTAAGCAACAAGCAGGCACGGATC  1000

seq1  GCAGACA-CACTTCTAGGCATCCACCCAAAGGATGTGGAAAGATGTGTCC  1047
      ||||||| ||||||||||||||||||||||| ||||||||||||||||| 
seq2  GCAGACACCACTTCTAGGCATCCACCCAAAGAATGTGGAAAGATGTGTCA  1050

seq1  ACACAAAAACTT-GCACATGGGG-CTGGTGAG--ATGGCTCAGTGGTTAA  1093
        |||||||||| |||||||||| ||||||||  |||||||||||| |||
seq2  CAACAAAAACTTGGCACATGGGGCCTGGTGAGAAATGGCTCAGTGG-TAA  1099

seq1  GAGCACCGACTGCTCTTCCGAAG-ATCCTGACT  1125
      ||||||  ||||||  ||  ||| |||||||||
seq2  GAGCACGAACTGCTTCTCGAAAGAATCCTGACT  1132