BAC Information

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BAC

Clone NameB6Ng01-181K02
Chromosome19 (Build37)
Map Location 4,405,720 - 4,406,814
singlet/doubletsinglet
Overlap genenone
Upstream geneMtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628
Downstream geneRhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181K02.bB6Ng01-181K02.g
ACCGA007741GA007742
length1,1671,099
definitionB6Ng01-181K02.b B6Ng01-181K02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattccaagtcccatcttaaatgtcaaaatctgcagatgttcaag
ttccttatataaaatggcatatgtgcatgtaacccccacacatcctcttg
taaccttcttgtctagattacttataatgcctacagcaacatcaatgcca
tgaaagcagctaccatactctattgcttagagaataatacaaggaaaaga
acttgtctgaatctacagatatgggagtcaaaatatggaagactgtgggg
caatggactatgcacagtctggtctccagtcaagctgaggtagaaccccg
gtggtggtaattcccacctacatgggacagaaggcgttccctcatgtctt
ctggaaccctggctcctgtcgaaattacagcccccacagcccccacaaga
gaagcatgtggctagtagtcacgtagacaatgtctcaagcttctgccgat
caggctagactcctcccagttacctagcaaccgcaagataacacagccca
ctataagaggggctgcttggcccctcctcaatctcttaagcttttacttt
ccctactctccctcttactctctccctctctcttactctctaagctttta
cctctctctaagctttcacctttcttattctctagctcttttctctcttt
ccctttcttcctctctccacatggccatggctggtctctctcttttttac
cttttctcttttcccctgcctttctacaataaagctctaaaaccatagac
tgtctctgttcatcaaggccctcctaatgagccgtgcctaatctcccatc
agaaggccttcctacactaaggactctcacctgcgtgggaacctctctta
ctctgccttcttcccatatctctggggccgagagtgttgccctggggtcc
ctattaacagggactgcctcttgtccacccctcaacctccccaccccccg
ccaagtgggggtcagtggctttcacacagccagatgcccaccggggctga
gtgaaagcgtcagcagtcttcgagtctccagtctcagttcagagcacaga
ctctgccaagaacacaggctctctcctccactccctacaccaggccacgg
agaccaacttgaatcctacatgctaaaatactgtgcatagaaggtactct
ccatggggtttccaatc
gaattcaaagccagcctggtctacagagttccaggtcaatcatggctaca
cagagaagctcttgtctacaaaacaaaacaaaacaaaacaaaacaaagaa
acagaaaagagaaacaacaaagctgagtccagcctgggacctgtcttgca
tgcctgaggccttgggatgaatcccccctccccatagagaaggcagaagg
gctttggagtagactcttaaagattgacatcttaaggctagatcaggaga
aatgctgagaatgacagtgcagaacttggcctggggctagagagatggtt
tagtgttcttactgaggacccagattagattaccaacaacaatgaggtag
ccaacaaccatccttaaatacaattctgacctcctagagccccaggcaag
cacgtggtgcatggacattcttgctcatcacctcccatgaagaagcaaaa
gcatcagcctgtatgaggcactgcacttggcacccgattgcaagatgagc
actatgaggcaagagggatatatggtcaagcgggcaagtcaaatgatcaa
agaagtccacctcacaactgaaacctttggaataagagcaggtccaataa
ttgtgtgtacacattaggtgtaaaccagactggtaggtgatggacatcag
gtcttcataggatatatacatacaatgtggactgttgaaggcacagtggt
aggaggggccagcactgctgtggtggaaaggcatctagtcagaggagctg
tcatagtgtggaatgcttgagctgaattgcaaactagtggctatgggcaa
gataataggagaaaggtcctgtccctggtgttctctgggctcagcttgtc
agtgacagcccagaactcacctgcagaggggagggaagaggagcctatcc
taaagattcactcaacacactcagtaagtggatatctttcataatggagg
gaccattaattatccaggccacttgtgtttgggttgttgatctggatttt
tgaccagtgccttctattgtgtattggcctgtctaaaactcatgtgtata
accagaatggccttgaactccaaaatctcctttccttcagcctgcgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4405720_4406814
seq2: B6Ng01-181K02.g_66_1164

seq1  GAATTCAAAGCCAGCCTGGTCTACAGAGTTCCAGGTCAATCATGGCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGCCTGGTCTACAGAGTTCCAGGTCAATCATGGCTACA  50

seq1  CAGAGAAGCTCTTGTCTACAAAACAAAACAAAACAAAACAAAACAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCTCTTGTCTACAAAACAAAACAAAACAAAACAAAACAAAGAA  100

seq1  ACAGAAAAGAGAAACAACAAAGCTGAGTCCAGCCTGGGACCTGTCTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGAGAAACAACAAAGCTGAGTCCAGCCTGGGACCTGTCTTGCA  150

seq1  TGCCTGAGGCCTTGGGATGAATCCCCCCTCCCCATAGAGAAGGCAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGGCCTTGGGATGAATCCCCCCTCCCCATAGAGAAGGCAGAAGG  200

seq1  GCTTTGGAGTAGACTCTTAAAGATTGACATCTTAAGGCTAGATCAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAGTAGACTCTTAAAGATTGACATCTTAAGGCTAGATCAGGAGA  250

seq1  AATGCTGAGAATGACAGTGCAGAACTTGGCCTGGGGCTAGAGAGATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGAATGACAGTGCAGAACTTGGCCTGGGGCTAGAGAGATGGTT  300

seq1  TAGTGTTCTTACTGAGGACCCAGATTAGATTACCAACAACAATGAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTTACTGAGGACCCAGATTAGATTACCAACAACAATGAGGTAG  350

seq1  CCAACAACCATCCTTAAATACAATTCTGACCTCCTAGAGCCCCAGGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACCATCCTTAAATACAATTCTGACCTCCTAGAGCCCCAGGCAAG  400

seq1  CACGTGGTGCATGGACATTCTTGCTCATCACCTCCCATGAAGAAGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGTGCATGGACATTCTTGCTCATCACCTCCCATGAAGAAGCAAAA  450

seq1  GCATCAGCCTGTATGAGGCACTGCACTTGGCACCCGATTGCAAGATGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCCTGTATGAGGCACTGCACTTGGCACCCGATTGCAAGATGAGC  500

seq1  ACTATGAGGCAAGAGGGATATATGGTCAAGCGGGCAAGTCAAATGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAGGCAAGAGGGATATATGGTCAAGCGGGCAAGTCAAATGATCAA  550

seq1  AGAAGTCCACCTCACAACTGAAACCTTTGGAATAAGAGCAGGTCCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCACCTCACAACTGAAACCTTTGGAATAAGAGCAGGTCCAATAA  600

seq1  TTGTGTGTACACATTAGGTGTAAACCAGACTGGTAGGTGATGGACATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTACACATTAGGTGTAAACCAGACTGGTAGGTGATGGACATCAG  650

seq1  GTCTTCATAGGATATATACATACAATGTGGACTGTTGAAGGCACAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATAGGATATATACATACAATGTGGACTGTTGAAGGCACAGTGGT  700

seq1  AGGAGGGGCCAGCACTGCTGTGGTGGAAAGGCATCTAGTCAGAGGAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCCAGCACTGCTGTGGTGGAAAGGCATCTAGTCAGAGGAGCTG  750

seq1  TCATAGTGTGGAATGCTTGAGCTGAATTGCAAACTAGTGGCTATGGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGTGGAATGCTTGAGCTGAATTGCAAACTAGTGGCTATGGGCAA  800

seq1  GATAATAGGAG-AAGGTCCTGTCCCTGGTGTTCTCTGGGCTCAGCTTGTC  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGGAGAAAGGTCCTGTCCCTGGTGTTCTCTGGGCTCAGCTTGTC  850

seq1  AGTGACAGCCCAGAACTCACCTGCAGAGGGGAGGGAAGAGGAGCCTATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGCCCAGAACTCACCTGCAGAGGGGAGGGAAGAGGAGCCTATCC  900

seq1  TAAAGATTCACTCAACACACTCAGTAAGTGGATATCTTTCATAATGGAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTCACTCAACACACTCAGTAAGTGGATATCTTTCATAATGGAGG  950

seq1  GA-CATTAATTATCCAGGCAACTTGTGTTTGGTTGGTTGATCTGTATTTT  998
      || |||||||||||||||| |||||||||||| | ||||||||| |||||
seq2  GACCATTAATTATCCAGGCCACTTGTGTTTGGGTTGTTGATCTGGATTTT  1000

seq1  TGAGCAGGGTCTCTCTA-TGTGTATTGG-CTGTCCTAGAACTCGCTGTGT  1046
      ||| ||| | || |||| |||||||||| |||| ||| |||||  |||||
seq2  TGACCAGTGCCT-TCTATTGTGTATTGGCCTGT-CTAAAACTC-ATGTGT  1047

seq1  A-GACCAGGATGGCCTTGAACTCACAAAATCTCCTT--CCTCAGCCT-CG  1092
      |  ||||| |||||||||||||| ||||||||||||  | ||||||| ||
seq2  ATAACCAGAATGGCCTTGAACTC-CAAAATCTCCTTTCCTTCAGCCTGCG  1096

seq1  TAG  1095
      |||
seq2  TAG  1099