BAC Information

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BAC

Clone NameB6Ng01-183M17
Chromosome19 (Build37)
Map Location 56,019,852 - 56,170,549
singlet/doubletdoublet
Overlap geneLOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183M17.bB6Ng01-183M17.g
ACCGA009331GA009332
length5791,199
definitionB6Ng01-183M17.b B6Ng01-183M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,169,965 - 56,170,549)(56,019,852 - 56,021,029)
sequence
caccgtgaagtttggtaccacagaacattttgagttgtccaggcgaaagt
gtgggctcttgtttatttgacaatttttctctcttggacattgtatttaa
acaagtgtctccttttggtccagtgtttcttcatatttatttatagaagg
gctttgcctttcctcctgctaatctggttttcatatttttggtgaaaggg
ataatatataaaattttacaagggtttcactttctttatgtttcctacgt
gtgtctgggtgtctggtgttctcattagatgagtgatacccattcacaga
ctcaccatgtctttaattcgagtttggaagatgtcatcatcctctggtag
ggtggggtggaggttctcctttgaacaccagccttcttccactttcaatg
tgctcgaatttgtaattttccctagattctccttttattcttacttactt
ttattcagcatactgttttatgtgctttaccctaagctgtgtgctttcac
taggacctatgagcattttaggctttagggctaacgagaaggagaacacg
aatgaggatggagagagggagagagagag
gaattcaaatcattacgttgggtaccattttgttgcggtaaatctccaac
caaaatatgccccagcaatgaaaacagaactcaattaatatgaatacatg
ctgtgcgcctagaagtcacctgagtgctgactcattccttgtttaaagcc
actcacaggaaaaggaattaacaacaaatataattagccccagggctatc
cccaacaggatggacatgagtaggtaagatgttaggacatagaagatcat
cagatcattggggtgccacccctaccccaccagcgattaatgctcatttt
actagtatattagatcgttcaagactggattaattctctcagaagtgggt
tgttatgcaatcagattgtctcatatgcttgggcccttctatacttcaga
atccccttttcttcatgtaacacaatcctgattatatgcaggatcactcg
accccattgcctgtcattcagaatttccagtcacctcatcattaagtaaa
cctcttctttttctgtagcatcttttttattatttcttggagaattttat
acaatgtatcttgagtatatccaattcccacttctactcccaaattcctc
ccagaccttctgcttatccccctccattgttttatccattttctagtaac
agatatttctgatgtagtaacattgtatctcatatggatcctcacagcct
cctaaagatttggttaaaaagccattttctcaatgttggcacaagggcct
gtaccaccttgcctggggcatgagaagaggggagcaggagctgtgactct
cagatccacatacctgctctcctccttaataataaataaagctttatggg
agtatattttagccagcagaaacatacttatttgaattggagacttagtg
agtttttagaaaaaaatgtcaaaattgcaacagtgctaccaccaattcga
ggtcagaaataattcccatcagcccaagtgaccatctctcctctccagtt
ccacagcaaaccacacaggcacctcgcttgccttttctcctggagattga
atacctacaccatcttttcaaggtctggtggatctttccatgaagtgtaa
gttttccccaaccatttcttggcaatccatgttccttccccaagtttagg
gaggattcattgaatgctctcctagtcaccacccaagcctaaaaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56169965_56170549
seq2: B6Ng01-183M17.b_47_631 (reverse)

seq1  CTCTCTCTCTCCCTCTCTCCATCCTCATTCGTGTTCTCCTTCTCGTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCCCTCTCTCCATCCTCATTCGTGTTCTCCTTCTCGTTAGC  50

seq1  CCTAAAGCCTAAAATGCTCATAGGTCCTAGTGAAAGCACACAGCTTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCCTAAAATGCTCATAGGTCCTAGTGAAAGCACACAGCTTAGGG  100

seq1  TAAAGCACATAAAACAGTATGCTGAATAAAAGTAAGTAAGAATAAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACATAAAACAGTATGCTGAATAAAAGTAAGTAAGAATAAAAGGA  150

seq1  GAATCTAGGGAAAATTACAAATTCGAGCACATTGAAAGTGGAAGAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGGGAAAATTACAAATTCGAGCACATTGAAAGTGGAAGAAGGCT  200

seq1  GGTGTTCAAAGGAGAACCTCCACCCCACCCTACCAGAGGATGATGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCAAAGGAGAACCTCCACCCCACCCTACCAGAGGATGATGACATC  250

seq1  TTCCAAACTCGAATTAAAGACATGGTGAGTCTGTGAATGGGTATCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACTCGAATTAAAGACATGGTGAGTCTGTGAATGGGTATCACTCA  300

seq1  TCTAATGAGAACACCAGACACCCAGACACACGTAGGAAACATAAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAGAACACCAGACACCCAGACACACGTAGGAAACATAAAGAAAG  350

seq1  TGAAACCCTTGTAAAATTTTATATATTATCCCTTTCACCAAAAATATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCTTGTAAAATTTTATATATTATCCCTTTCACCAAAAATATGAA  400

seq1  AACCAGATTAGCAGGAGGAAAGGCAAAGCCCTTCTATAAATAAATATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATTAGCAGGAGGAAAGGCAAAGCCCTTCTATAAATAAATATGAA  450

seq1  GAAACACTGGACCAAAAGGAGACACTTGTTTAAATACAATGTCCAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGGACCAAAAGGAGACACTTGTTTAAATACAATGTCCAAGAGA  500

seq1  GAAAAATTGTCAAATAAACAAGAGCCCACACTTTCGCCTGGACAACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGTCAAATAAACAAGAGCCCACACTTTCGCCTGGACAACTCAA  550

seq1  AATGTTCTGTGGTACCAAACTTCACGGTGGAATTC  585
      |||||||||||||||||||||||||||||||||||
seq2  AATGTTCTGTGGTACCAAACTTCACGGTGGAATTC  585

seq1: chr19_56019852_56021029
seq2: B6Ng01-183M17.g_67_1265

seq1  GAATTCAAATCATTACGTTGGGTACCATTTTGTTGCGGTAAATCTCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCATTACGTTGGGTACCATTTTGTTGCGGTAAATCTCCAAC  50

seq1  CAAAATATGCCCCAGCAATGAAAACAGAACTCAATTAATATGAATACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGCCCCAGCAATGAAAACAGAACTCAATTAATATGAATACATG  100

seq1  CTGTGCGCCTAGAAGTCACCTGAGTGCTGACTCATTCCTTGTTTAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGCCTAGAAGTCACCTGAGTGCTGACTCATTCCTTGTTTAAAGCC  150

seq1  ACTCACAGGAAAAGGAATTAACAACAAATATAATTAGCCCCAGGGCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGGAAAAGGAATTAACAACAAATATAATTAGCCCCAGGGCTATC  200

seq1  CCCAACAGGATGGACATGAGTAGGTAAGATGTTAGGACATAGAAGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGGATGGACATGAGTAGGTAAGATGTTAGGACATAGAAGATCAT  250

seq1  CAGATCATTGGGGTGCCACCCCTACCCCACCAGCGATTAATGCTCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATTGGGGTGCCACCCCTACCCCACCAGCGATTAATGCTCATTTT  300

seq1  ACTAGTATATTAGATCGTTCAAGACTGGATTAATTCTCTCAGAAGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTATATTAGATCGTTCAAGACTGGATTAATTCTCTCAGAAGTGGGT  350

seq1  TGTTATGCAATCAGATTGTCTCATATGCTTGGGCCCTTCTATACTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCAATCAGATTGTCTCATATGCTTGGGCCCTTCTATACTTCAGA  400

seq1  ATCCCCTTTTCTTCATGTAACACAATCCTGATTATATGCAGGATCACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTTTCTTCATGTAACACAATCCTGATTATATGCAGGATCACTCG  450

seq1  ACCCCATTGCCTGTCATTCAGAATTTCCAGTCACCTCATCATTAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTGCCTGTCATTCAGAATTTCCAGTCACCTCATCATTAAGTAAA  500

seq1  CCTCTTCTTTTTCTGTAGCATCTTTTTTATTATTTCTTGGAGAATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTTTTCTGTAGCATCTTTTTTATTATTTCTTGGAGAATTTTAT  550

seq1  ACAATGTATCTTGAGTATATCCAATTCCCACTTCTACTCCCAAATTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTATCTTGAGTATATCCAATTCCCACTTCTACTCCCAAATTCCTC  600

seq1  CCAGACCTTCTGCTTATCCCCCTCCATTGTTTTATCCATTTTCTAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTTCTGCTTATCCCCCTCCATTGTTTTATCCATTTTCTAGTAAC  650

seq1  AGATA-TTCTGATGTAGTAACATTGTATCTCATATGGATCCTCACAGCCT  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCTGATGTAGTAACATTGTATCTCATATGGATCCTCACAGCCT  700

seq1  CCTAAAGATTTGGTTAAAAAGCCATTTTCTCAATGTTGGCACAAGGGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGATTTGGTTAAAAAGCCATTTTCTCAATGTTGGCACAAGGGCCT  750

seq1  GTACCACCTTGCCTGGGGCATGAGAAGA-GGGAGCAGGAGCTGTGACTCT  798
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTACCACCTTGCCTGGGGCATGAGAAGAGGGGAGCAGGAGCTGTGACTCT  800

seq1  CAGATCCACATACCTGCTCTCCTCCTTAATAATAAATAAAGCTTTATGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCACATACCTGCTCTCCTCCTTAATAATAAATAAAGCTTTATGGG  850

seq1  AGTATATTTTAGCCAGCAGAAAACATACTTATTTGAATTGGAGACTTAGT  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTATATTTTAGCCAGCAG-AAACATACTTATTTGAATTGGAGACTTAGT  899

seq1  GAG-TTTTAGAAAAAAATGTCAAAATTGCACAAGTGCTACCA-CAATTCG  946
      ||| ||||||||||||||||||||||||||  |||||||||| |||||||
seq2  GAGTTTTTAGAAAAAAATGTCAAAATTGCAACAGTGCTACCACCAATTCG  949

seq1  AGGTCAGAA--TATTCCCATCAG-CCAAGTGACCAACTCCCCTCTCCAGT  993
      |||||||||   ||||||||||| ||||||||||| ||| ||||||||||
seq2  AGGTCAGAAATAATTCCCATCAGCCCAAGTGACCATCTCTCCTCTCCAGT  999

seq1  CCCACAGGCAACCCACACAGCCA-CTCGCTTGC--TTTCT-CTGTAGATT  1039
       ||||| |||| |||||||| || |||||||||  ||||| ||| |||||
seq2  TCCACA-GCAAACCACACAGGCACCTCGCTTGCCTTTTCTCCTGGAGATT  1048

seq1  TGATACCTTACA-CATC-TTTCTATGTCT-GTGG-TCTTT-CATGAAGTG  1084
        ||||| |||| |||| |||| | |||| |||| ||||| |||||||||
seq2  GAATACC-TACACCATCTTTTCAAGGTCTGGTGGATCTTTCCATGAAGTG  1097

seq1  T-AGTTT--CTCAACC-TTTCTTTGTCATCCATG-TCTCTCCCACAGTTT  1129
      | |||||  | ||||| |||||| |  ||||||| ||  ||||  |||||
seq2  TAAGTTTTCCCCAACCATTTCTTGGCAATCCATGTTCCTTCCCCAAGTTT  1147

seq1  AAGGAGGAGTTTTAATTTAATG-TCTCCTAGT---CACACAAG--TTAAA  1173
      | ||||||   || ||| |||| |||||||||   ||| ||||  | |||
seq2  AGGGAGGA---TTCATTGAATGCTCTCCTAGTCACCACCCAAGCCTAAAA  1194

seq1  GGAAA  1178
      |||||
seq2  GGAAA  1199