BAC Information

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BAC

Clone NameB6Ng01-184I08
Chromosome19 (Build37)
Map Location 16,066,643 - 16,120,674
singlet/doubletdoublet
Overlap geneLOC100042048
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78
Downstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184I08.bB6Ng01-184I08.g
ACCGA009875GA009876
length1,143358
definitionB6Ng01-184I08.b B6Ng01-184I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,066,643 - 16,067,794)(16,120,317 - 16,120,674)
sequence
gaattcttcgataaaaattttaaaatctttttggatgtacaaacagatcc
caagttatctccgcaaacaatgactaagacttgtcagataatacctaagg
cctttaacagagcttagcctgcttcactataatttacctccctgataggt
gtaccactgtgcttgaaaagttcctagattgttagtgccctttaatccat
tactataaaaacatcatgagattgctaccacataggagcatggtatttgg
ggaaactcgaatctgtctctaggccacaatcgctcccctttgatgtgaca
gctgtggatttctttgcatcaatactagtatttgcctggagtttgatcta
caacaccttaaaagcaaaaccaaaagacccctaaacactttctttaaaaa
agaaaaaaaaaacttgtatttaatgtgagtacactctttctgtcttcaga
cacaccagaagaggacatctgatcccattacagatggttgtgagacacca
tgtggttgctgggaattgaactcaggaccggacatctgttcccattacag
atggttgtgagacaccatgtggttgctgggaattgaactcaggacctttg
gagcagcagtcagtgctcttaaccattgagccatctcaccagtctctcta
aacactttcatgttcacttccaaaaatcagattgcatttaggactttgaa
gacacaagttcctgtaacaaaaaggagcacgtgggatggcttagagtcaa
tagagatgccaggcctggcattgcatagctataatcccagtactcaggag
gcagagacaggagggagagtcaccacaagtttaaggccatcctagtactc
tgtgaattccaagccacccaaggttacacagtgagatactgtctcaatgc
gccaaaaaccaaagtaatgacaagactcgcagaaatgcgttaccttatag
ttattgaggtgaggaatccaagtcaaaggtgtcaccaatgctggctcttc
tagcagttctgatagccttctgtacacttctttctagtttggatgtggct
ggcaatctctggattctttggaccggtagacaatctactttattgtctgt
gacattcttctccaccagtgtcgaattcctcatcggatataag

tacacacactgaatgaccagacttgagcctgcaagagagtgacccataac
cccagttctgcaagtgggcactgccctcttaatccatacagacatgagtt
tcttcatctcaaaattaagtaaattagctgacaagaattttcatttcctc
tagaaagagtcagagactagtgctgattttctggagtggggacaattttg
aaagagaaattagaagcagcagtgagaatgttaacatgactagttagtgt
gctaggagttctttgtgcgtgtgcatgcatcgtgtgtgtgcatgtgcgtg
cgtgcgtgtgcatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16066643_16067794
seq2: B6Ng01-184I08.b_45_1187

seq1  GAATTCTTCGATAAAAATTTTAAAATCTTTTTGGATGTACAAACAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGATAAAAATTTTAAAATCTTTTTGGATGTACAAACAGATCC  50

seq1  CAAGTTATCTCCGCAAACAATGACTAAGACTTGTCAGATAATACCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATCTCCGCAAACAATGACTAAGACTTGTCAGATAATACCTAAGG  100

seq1  CCTTTAACAGAGCTTAGCCTGCTTCACTATAATTTACCTCCCTGATAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACAGAGCTTAGCCTGCTTCACTATAATTTACCTCCCTGATAGGT  150

seq1  GTACCACTGTGCTTGAAAAGTTCCTAGATTGTTAGTGCCCTTTAATCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTGTGCTTGAAAAGTTCCTAGATTGTTAGTGCCCTTTAATCCAT  200

seq1  TACTATAAAAACATCATGAGATTGCTACCACATAGGAGCATGGTATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAAAACATCATGAGATTGCTACCACATAGGAGCATGGTATTTGG  250

seq1  GGAAACTCGAATCTGTCTCTAGGCCACAATCGCTCCCCTTTGATGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCGAATCTGTCTCTAGGCCACAATCGCTCCCCTTTGATGTGACA  300

seq1  GCTGTGGATTTCTTTGCATCAATACTAGTATTTGCCTGGAGTTTGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATTTCTTTGCATCAATACTAGTATTTGCCTGGAGTTTGATCTA  350

seq1  CAACACCTTAAAAGCAAAACCAAAAGACCCCTAAACACTTTCTTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCTTAAAAGCAAAACCAAAAGACCCCTAAACACTTTCTTTAAAAA  400

seq1  AGAAAAAAAAAACTTGTATTTAATGTGAGTACACTCTTTCTGTCTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAACTTGTATTTAATGTGAGTACACTCTTTCTGTCTTCAGA  450

seq1  CACACCAGAAGAGGACATCTGATCCCATTACAGATGGTTGTGAGACACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAAGAGGACATCTGATCCCATTACAGATGGTTGTGAGACACCA  500

seq1  TGTGGTTGCTGGGAATTGAACTCAGGACCGGACATCTGTTCCCATTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGAATTGAACTCAGGACCGGACATCTGTTCCCATTACAG  550

seq1  ATGGTTGTGAGACACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGACACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTG  600

seq1  GAGCAGCAGTCAGTGCTCTTAACCATTGAGCCATCTCACCAGTCTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGTCAGTGCTCTTAACCATTGAGCCATCTCACCAGTCTCTCTA  650

seq1  AACACTTTCATGTTCACTTCCAAAAATCAGATTGCATTTAGGACTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTCATGTTCACTTCCAAAAATCAGATTGCATTTAGGACTTTGAA  700

seq1  GACACAAGTTCCTGTAACAAAAAGGAGCACGTGGGATGGCTTAGAGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGTTCCTGTAACAAAAAGGAGCACGTGGGATGGCTTAGAGTCAA  750

seq1  TAGAGATGCCAGGCCTGGCATTGCATAGCTATAATCCCAGTACTCAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCCAGGCCTGGCATTGCATAGCTATAATCCCAGTACTCAGGAG  800

seq1  GCAGAGACAGGAGGGAGAGTCACCACAAGTTTAAGGCCATCCTAGTACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACAGGAGGGAGAGTCACCACAAGTTTAAGGCCATCCTAGTACTC  850

seq1  TGTGAATTCCAAGCCACCCAAGGTTACACAGTGAGATACTGTCTCAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCCAAGCCACCCAAGGTTACACAGTGAGATACTGTCTCAATGC  900

seq1  GCCAAAAACCAAAGTAATGACAAGACTCGCAGAAATGCGTTACCTTATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAACCAAAGTAATGACAAGACTCGCAGAAATGCGTTACCTTATAG  950

seq1  TTATTGAGGTGAGGAATCCAAGGTCAAGGTGTCACCAATGCTGGCTCCTT  1000
      ||||||||||||||||||||||   ||||||||||||||||||||| |||
seq2  TTATTGAGGTGAGGAATCCAAGTCAAAGGTGTCACCAATGCTGGCT-CTT  999

seq1  CTAGCAGTTCTGAATAGCCTTCTGTACACTTCTTTCCTAGTTTGGGTTGT  1050
      |||||||||||| |||||||||||||||||||||| ||||||| || |||
seq2  CTAGCAGTTCTG-ATAGCCTTCTGTACACTTCTTT-CTAGTTT-GGATGT  1046

seq1  GGCTGGCAATCTCTGGGATTCTTTGGCCCGTAGGACCAATCTACCTTTAT  1100
      |||||||||||||| ||||||||||| |||   || ||||||| ||||||
seq2  GGCTGGCAATCTCT-GGATTCTTTGGACCGGTAGA-CAATCTA-CTTTAT  1093

seq1  TGTCCTGTGACATTCTTCTCCA-CAGTGTCCCAAATTTCCCTCATCG--T  1147
      ||| |||||||||||||||||| ||||||  | ||||  ||||||||  |
seq2  TGT-CTGTGACATTCTTCTCCACCAGTGT--CGAATT--CCTCATCGGAT  1138

seq1  ATAAG  1152
      |||||
seq2  ATAAG  1143


seq1: chr19_16120317_16120674
seq2: B6Ng01-184I08.g_73_430 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACGCACATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACGCACATGCA  50

seq1  CACGCACGCACGCACATGCACACACACGATGCATGCACACGCACAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACGCACGCACATGCACACACACGATGCATGCACACGCACAAAGAA  100

seq1  CTCCTAGCACACTAACTAGTCATGTTAACATTCTCACTGCTGCTTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCACACTAACTAGTCATGTTAACATTCTCACTGCTGCTTCTAAT  150

seq1  TTCTCTTTCAAAATTGTCCCCACTCCAGAAAATCAGCACTAGTCTCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCAAAATTGTCCCCACTCCAGAAAATCAGCACTAGTCTCTGAC  200

seq1  TCTTTCTAGAGGAAATGAAAATTCTTGTCAGCTAATTTACTTAATTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGAGGAAATGAAAATTCTTGTCAGCTAATTTACTTAATTTTGA  250

seq1  GATGAAGAAACTCATGTCTGTATGGATTAAGAGGGCAGTGCCCACTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAACTCATGTCTGTATGGATTAAGAGGGCAGTGCCCACTTGCA  300

seq1  GAACTGGGGTTATGGGTCACTCTCTTGCAGGCTCAAGTCTGGTCATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGGTTATGGGTCACTCTCTTGCAGGCTCAAGTCTGGTCATTCAG  350

seq1  TGTGTGTA  358
      ||||||||
seq2  TGTGTGTA  358


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