BAC Information

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BAC

Clone NameB6Ng01-185B16
Chromosome19 (Build37)
Map Location 10,919,763 - 11,015,681
singlet/doubletdoublet
Overlap geneSlc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44
Upstream geneLOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6
Downstream geneCcdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185B16.bB6Ng01-185B16.g
ACCGA010305GA010306
length1,0331,076
definitionB6Ng01-185B16.b B6Ng01-185B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,014,660 - 11,015,681)(10,919,763 - 10,920,828)
sequence
gtcagccagcaggagggtagaggctggggtggcggtggaggaggcgcggc
gacggcgattgcggagcccaccactctggtcgctgtcttctaccagcacg
ctttcaagcaccgcgcgtagcgagcgccgcagtttgtacaacatgtcggg
gcatgtgaacacatagagcagtgggttgaccacgctgttgaagaaggcca
ggctggtgacaaagggcagcccacgtgacgcgagctgccgtagcgtggtg
acagaatgggcacgcgcctccagcagactgaagatgtggtagggccccca
gcagagcacgaaggcaaccacgatggccgccaccaggcgcacaaagcggc
ctgtcctctggcgaccacggtggtgcagtcgcaggctcacggctacgtgg
ctcgaggcaattatggccagaggtaccatgaaggccagcaggaatttgct
gaccgccagggccttctggcggtagtcgcacgtggtgtcgcggtcaggcc
ctggattccagagcagcaagttgtagtagcacatgatgcggccatcaagc
cgcgggatggtgtctctgaacacgaaatatggtattgtgttgagcaccgc
cagagcccagagcatcaggcagactctgtgcgcgaccgccaccgtgcggt
ggttctgtgcccacactggcctcaccacctgcaggcagcggtccaggctt
aatggcactgagcaggaagccgctggcaaacatgttgaggaagaagaccg
aggaatgtagctttgcagaaggtagtgcccagctcccacgagtggcccac
tgccaggaagtaggtgaagaaaggcagggaggcggcggctaacaagtcgg
atagcgccaggtgcagcacccaggtggtgaccactgtctggcgcatgcga
cagcccaccacaaaaaaggatgagtccgttttccaccaagcccagtcagc
gaagtccagtcccgttgctacagtcactgacacgtggtcgatgtaaccgg
aaggctagagttgctgtggtttggaaagctgga
gaattccaggacagccagggctgcacagagaaactgtgtctcgaagaaac
caaataaataaatagataaataaacaaataaaaccaaaacaaacaaacaa
acaaaaacaggggctagtaggcaagtaattgacctactctataaaactga
atacaaagaaaaatgtattgatattgaatgtgatacccgggagagcaggc
tgggaagtagctgttatgctgcctacagtacagggtaataatgtgtgagt
cttcatttggttagaatgagtctctttgtgggcattccaggcatgtgatt
ttgggccccatgaaggaagacagctcagatggggagtgcacagttctgag
aggttagcacgagctgctatatatagaattttctgttgggtaatattaac
tatgcaaatgagagttatgcaaatctaggtagttcctattgatcaaaatt
cagccctggtagggttacagggcgttgtctgccactagcagttgggattc
ctagaccacacttgtgaatattttctaaaggctaccatttctcttttctg
gcctctcatcagtggccttcccaccatacttccaagggcctcagccactg
agcatctcttcttccttctggtggaagagctggttgcccagacaacagat
cactgagcctttgtaacatccatggttttactcagtaagtcatctctcga
gctcagttattgttattttaacaaaaaccgctatgtataagataaatatt
tatttctgtgttggcaacctttcacaacaaattcattgtgctgaaattct
tgaacctcggcctgtgagaggcttcaaaccagactctgggttgaagggtt
cctttcccttcccacatccctgtaatcttttgctgtctttgtatctcacc
ccctaggaaaccgtagagactaacggactgccttgaaggcagcgtagact
acattggatttgagtttcttttagagatggcttctactcagtgggagaga
atgggtgggggcctcagattgggagtagccgagcactagaataggcctgc
tgtagcattcagaaattaagtagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11014660_11015681
seq2: B6Ng01-185B16.b_53_1085 (reverse)

seq1  TCCAGC-TTCCAAACCACAGCAACTCTAGCCT--CCGCTACATCGACCAC  47
      |||||| |||||||||||||||||||||||||  | | ||||||||||||
seq2  TCCAGCTTTCCAAACCACAGCAACTCTAGCCTTCCGGTTACATCGACCAC  50

seq1  GTGTCGGTG-CTGTTGC-ACGGG-CTGG-CCTCGCTG-CTGGGCCTGGTG  92
      ||||| ||| |||| || ||||| |||| | |||||| |||||| |||||
seq2  GTGTCAGTGACTGTAGCAACGGGACTGGACTTCGCTGACTGGGCTTGGTG  100

seq1  GAAAACGGACTCATCC-TGTTTGTGGTGGGCTGTCGCATGCGCCAGACAG  141
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  GAAAACGGACTCATCCTTTTTTGTGGTGGGCTGTCGCATGCGCCAGACAG  150

seq1  TGGTCACCACCTGGGTGCTGCACCTGGCGCTATCCGACTTGTTAGCCGCC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCACCTGGGTGCTGCACCTGGCGCTATCCGACTTGTTAGCCGCC  200

seq1  GCCTCCCTGCCTTTCTTCACCTACTTCCTGGCAGTGGGCCACTCGTGGGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTGCCTTTCTTCACCTACTTCCTGGCAGTGGGCCACTCGTGGGA  250

seq1  GCTGGGCACTACCTTCTGC-AAGCTACATTCCTCGGTCTTCTTCCTCAAC  290
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTGGGCACTACCTTCTGCAAAGCTACATTCCTCGGTCTTCTTCCTCAAC  300

seq1  ATGTTTGCCAGCGGCTTCCTGCTCAGTGCCATT-AGCCTGGACCGCTGCC  339
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGTTTGCCAGCGGCTTCCTGCTCAGTGCCATTAAGCCTGGACCGCTGCC  350

seq1  TGCAGGTGGTGAGGCCAGTGTGGGCACAGAACCACCGCACGGTGGCGGTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGGTGAGGCCAGTGTGGGCACAGAACCACCGCACGGTGGCGGTC  400

seq1  GCGCACAGAGTCTGCCTGATGCTCTGGGCTCTGGCGGTGCTCAACACAAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAGAGTCTGCCTGATGCTCTGGGCTCTGGCGGTGCTCAACACAAT  450

seq1  ACCATATTTCGTGTTCAGAGACACCATCCCGCGGCTTGATGGCCGCATCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTCGTGTTCAGAGACACCATCCCGCGGCTTGATGGCCGCATCA  500

seq1  TGTGCTACTACAACTTGCTGCTCTGGAATCCAGGGCCTGACCGCGACACC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTACTACAACTTGCTGCTCTGGAATCCAGGGCCTGACCGCGACACC  550

seq1  ACGTGCGACTACCGCCAGAAGGCCCTGGCGGTCAGCAAATTCCTGCTGGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCGACTACCGCCAGAAGGCCCTGGCGGTCAGCAAATTCCTGCTGGC  600

seq1  CTTCATGGTACCTCTGGCCATAATTGCCTCGAGCCACGTAGCCGTGAGCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTACCTCTGGCCATAATTGCCTCGAGCCACGTAGCCGTGAGCC  650

seq1  TGCGACTGCACCACCGTGGTCGCCAGAGGACAGGCCGCTTTGTGCGCCTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTGCACCACCGTGGTCGCCAGAGGACAGGCCGCTTTGTGCGCCTG  700

seq1  GTGGCGGCCATCGTGGTTGCCTTCGTGCTCTGCTGGGGGCCCTACCACAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGCCATCGTGGTTGCCTTCGTGCTCTGCTGGGGGCCCTACCACAT  750

seq1  CTTCAGTCTGCTGGAGGCGCGTGCCCATTCTGTCACCACGCTACGGCAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCTGCTGGAGGCGCGTGCCCATTCTGTCACCACGCTACGGCAGC  800

seq1  TCGCGTCACGTGGGCTGCCCTTTGTCACCAGCCTGGCCTTCTTCAACAGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGTCACGTGGGCTGCCCTTTGTCACCAGCCTGGCCTTCTTCAACAGC  850

seq1  GTGGTCAACCCACTGCTCTATGTGTTCACATGCCCCGACATGTTGTACAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAACCCACTGCTCTATGTGTTCACATGCCCCGACATGTTGTACAA  900

seq1  ACTGCGGCGCTCGCTACGCGCGGTGCTTGAAAGCGTGCTGGTAGAAGACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGCGCTCGCTACGCGCGGTGCTTGAAAGCGTGCTGGTAGAAGACA  950

seq1  GCGACCAGAGTGGTGGGCTCCGCAATCGCCGTCGCCGCGCCTCCTCCACC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACCAGAGTGGTGGGCTCCGCAATCGCCGTCGCCGCGCCTCCTCCACC  1000

seq1  GCCACCCCAGCCTCTACCCTCCTGCTGGCTGAC  1022
      |||||||||||||||||||||||||||||||||
seq2  GCCACCCCAGCCTCTACCCTCCTGCTGGCTGAC  1033

seq1: chr19_10919763_10920828
seq2: B6Ng01-185B16.g_66_1141

seq1  GAATTCCAGGACAGCCAGGGCTGCACAGAGAAACTGTGTCTCGAAGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTGCACAGAGAAACTGTGTCTCGAAGAAAC  50

seq1  CAAATAAATAAATAGATAAATAAACAAATAAAACCAAAACAAACAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATAAATAGATAAATAAACAAATAAAACCAAAACAAACAAACAA  100

seq1  ACAAAAACAGGGGCTAGTAGGCAAGTAATTGACCTACTCTATAAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAGGGGCTAGTAGGCAAGTAATTGACCTACTCTATAAAACTGA  150

seq1  ATACAAAGAAAAATGTATTGATATTGAATGTGATACCCGGGAGAGCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGAAAAATGTATTGATATTGAATGTGATACCCGGGAGAGCAGGC  200

seq1  TGGGAAGTAGCTGTTATGCTGCCTACAGTACAGGGTAATAATGTGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAGCTGTTATGCTGCCTACAGTACAGGGTAATAATGTGTGAGT  250

seq1  CTTCATTTGGTTAGAATGAGTCTCTTTGTGGGCATTCCAGGCATGTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGGTTAGAATGAGTCTCTTTGTGGGCATTCCAGGCATGTGATT  300

seq1  TTGGGCCCCATGAAGGAAGACAGCTCAGATGGGGAGTGCACAGTTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCCCATGAAGGAAGACAGCTCAGATGGGGAGTGCACAGTTCTGAG  350

seq1  AGGTTAGCACGAGCTGCTATATATAGAATTTTCTGTTGGGTAATATTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCACGAGCTGCTATATATAGAATTTTCTGTTGGGTAATATTAAC  400

seq1  TATGCAAATGAGAGTTATGCAAATCTAGGTAGTTCCTATTGATCAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAATGAGAGTTATGCAAATCTAGGTAGTTCCTATTGATCAAAATT  450

seq1  CAGCCCTGGTAGGGTTACAGGGCGTTGTCTGCCACTAGCAGTTGGGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGTAGGGTTACAGGGCGTTGTCTGCCACTAGCAGTTGGGATTC  500

seq1  CTAGACCACACTTGTGAATATTTTCTAAAGGCTACCATTTCTCTTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCACACTTGTGAATATTTTCTAAAGGCTACCATTTCTCTTTTCTG  550

seq1  GCCTCTCATCAGTGGCCTTCCCACCATACTTCCAAGGGCCTCAGCCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCATCAGTGGCCTTCCCACCATACTTCCAAGGGCCTCAGCCACTG  600

seq1  AGCATCTCTTCTTCCTTCTGGTGGAAGAGCTGGTTGCCCAGACAACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCTTCTTCCTTCTGGTGGAAGAGCTGGTTGCCCAGACAACAGAT  650

seq1  CACTGAGCCTTTGTAACATCCATGGTTTTACTCAGTAAGTCATCTCTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCTTTGTAACATCCATGGTTTTACTCAGTAAGTCATCTCTCGA  700

seq1  GCTCAGTTATTGTTATTTTAACAAAAACCGCTATGTATAAGATAAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTATTGTTATTTTAACAAAAACCGCTATGTATAAGATAAATATT  750

seq1  TATTTCTGTGTTGGCAACC-TTCACAACAAATTCATTGTGCTGAAATTCT  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTTCTGTGTTGGCAACCTTTCACAACAAATTCATTGTGCTGAAATTCT  800

seq1  TGAACCTCGGCCTGTGAGAGGCTTCAAACCAGACTCTGGGTTGAAGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCGGCCTGTGAGAGGCTTCAAACCAGACTCTGGGTTGAAGGGTT  850

seq1  CCTTTCCCTTCCCACATCCCTGTAATC-TTTGCTGTCTTTGTATCTCACC  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTTTCCCTTCCCACATCCCTGTAATCTTTTGCTGTCTTTGTATCTCACC  900

seq1  CCCTAGGAAACCGTAGAGAC-AACGGACTGCCTTG-AGGCAGCGTAGACT  946
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CCCTAGGAAACCGTAGAGACTAACGGACTGCCTTGAAGGCAGCGTAGACT  950

seq1  ACATTGGATTTGAGTT--CTTTAGAGATGGC-TCTACTCAGT-GGAGAG-  991
      ||||||||||||||||   |||||||||||| |||||||||| |||||| 
seq2  ACATTGGATTTGAGTTTCTTTTAGAGATGGCTTCTACTCAGTGGGAGAGA  1000

seq1  ATGGGT-GGGGCCACAGGATTGGGAGTAGCCGAGCACTAG-ATAGG-CTG  1038
      |||||| |||||| || ||||||||||||||||||||||| ||||| |||
seq2  ATGGGTGGGGGCCTCA-GATTGGGAGTAGCCGAGCACTAGAATAGGCCTG  1049

seq1  CTGTAGCATTCAGGAGATTAAGTAGTCA  1066
      |||||||||||| || ||||||||||||
seq2  CTGTAGCATTCA-GAAATTAAGTAGTCA  1076