BAC Information

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BAC

Clone NameB6Ng01-185J10
Chromosome19 (Build37)7 (Build37)
Map Location 42,005,793 - 42,006,945123,743,416 - 123,743,872
singlet/doubletsingletsinglet
Overlap geneExosc1
Upstream geneBlnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1
Downstream geneZdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185J10.bB6Ng01-185J10.g
ACCGA010659GA010660
length1,170280
definitionB6Ng01-185J10.b B6Ng01-185J10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,005,793 - 42,006,945)(123,743,416 - 123,743,872)
sequence
gaattcagcagccgaccatggcagctatagcacagtgactaggacccgct
caccttacaggtgacgacagctcccacatctggaagcaactgggactctg
tttctctcatcactgacaccacgggaacctgtggagaaaatagaaaggtc
agtgtagtggctaagtaagccttggtttgagaaagcagcctgtagattag
tttttagcctatagcagaggacatcagtcattttaggaaatagaggatca
gaagccattagaattaggtggccaggtttaatatagcctttctgattagt
tgtaaattactgaagattctcttggaatttcctggtacaaatccttttgc
ttataattatgaatatcctgactcttccaagctatacttttttttttttt
ttttacacttcataagtcagatcttgcaattaaatgctacagaatggcaa
ctcttgttttagtccaatggcagctggcaagtaccatcttacctctcttg
cttggtgcggtttcctcaccttactaagtccctcccatgtcagtgtccgt
ctaacccattctctacaggaggatcacattctttgctctcctccacctct
acttatattcagatgactaaatcctgtcactgtctagaatgcacagagcc
tgttacatgttcttattgtaccgcacaattcttttgtacatttgctcatg
atttctgtccgcctcctcagtaagaaaagctgtgtattgggctcgtgact
ctatccccagtagcaaataagggcagccctgagcaggtcacattgaaagt
gctcaagagacatcgatgcagtgactaaacacacaggctgaggctgactt
tatctccagaaccaacagaactggaatctgtttttacaaataagctcaac
acaaagagagatgttttaggtctagcccagttcctaaagagttttttatt
tttttcggggaggattggatctgtgggtcccagggtcagcatacttacgt
aagcctctgtactggatggagccaccaaggtctaaggtttagttttattt
attttttttatcggtctacattatcacgattgccttttatcttgggcttg
gttagaaaggctgggatacgctggtgtatcaccaaatcctggtctccact
taatgtctagttgggcaaga
caggacagccagggctatacagagaaaccctgtctcaaaaaacaaaacaa
aacagaacaaaaaaaaaagttttaaaatgaaaaaataagataaacaaaga
gtccacacggtaccctggaggttcaggcaggaggaatgtgagttgaagcc
aacctgggctacagtgaaatgagacagggtgcctctaggtagctccgact
gccctagatctcgttctgtagattaggctggcctccaattaacaaagaac
ccccagcttctgattgctgggattaaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42005793_42006945
seq2: B6Ng01-185J10.b_42_1211

seq1  GAATTCAGCAGCCGACCATGGCAGCTATAGCACAGTGACTAGGACCCGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGCCGACCATGGCAGCTATAGCACAGTGACTAGGACCCGCT  50

seq1  CACCTTACAGGTGACGACAGCTCCCACATCTGGAAGCAACTGGGACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACAGGTGACGACAGCTCCCACATCTGGAAGCAACTGGGACTCTG  100

seq1  TTTCTCTCATCACTGACACCACGGGAACCTGTGGAGAAAATAGAAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCATCACTGACACCACGGGAACCTGTGGAGAAAATAGAAAGGTC  150

seq1  AGTGTAGTGGCTAAGTAAGCCTTGGTTTGAGAAAGCAGCCTGTAGATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTGGCTAAGTAAGCCTTGGTTTGAGAAAGCAGCCTGTAGATTAG  200

seq1  TTTTTAGCCTATAGCAGAGGACATCAGTCATTTTAGGAAATAGAGGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCCTATAGCAGAGGACATCAGTCATTTTAGGAAATAGAGGATCA  250

seq1  GAAGCCATTAGAATTAGGTGGCCAGGTTTAATATAGCCTTTCTGATTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATTAGAATTAGGTGGCCAGGTTTAATATAGCCTTTCTGATTAGT  300

seq1  TGTAAATTACTGAAGATTCTCTTGGAATTTCCTGGTACAAATCCTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTACTGAAGATTCTCTTGGAATTTCCTGGTACAAATCCTTTTGC  350

seq1  TTATAATTATGAATATCCTGACTCTTCCAAGCTATACTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTATGAATATCCTGACTCTTCCAAGCTATACTTTTTTTTTTTTT  400

seq1  TTTTACACTTCATAAGTCAGATCTTGCAATTAAATGCTACAGAATGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTTCATAAGTCAGATCTTGCAATTAAATGCTACAGAATGGCAA  450

seq1  CTCTTGTTTTAGTCCAATGGCAGCTGGCAAGTACCATCTTACCTCTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTTAGTCCAATGGCAGCTGGCAAGTACCATCTTACCTCTCTTG  500

seq1  CTTGGTGCGGTTTCCTCACCTTACTAAGTCCCTCCCATGTCAGTGTCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCGGTTTCCTCACCTTACTAAGTCCCTCCCATGTCAGTGTCCGT  550

seq1  CTAACCCATTCTCTACAGGAGGATCACATTCTTTGCTCTCCTCCACCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCATTCTCTACAGGAGGATCACATTCTTTGCTCTCCTCCACCTCT  600

seq1  ACTTATATTCAGATGACTAAATCCTGTCACTGTCTAGAATGCACAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTCAGATGACTAAATCCTGTCACTGTCTAGAATGCACAGAGCC  650

seq1  TGTTACATGTTCTTATTGTACCGCACAATTCTTTTGTACATTTGCTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATGTTCTTATTGTACCGCACAATTCTTTTGTACATTTGCTCATG  700

seq1  ATTTCTGTCCGCCTCCTCAGTAAGAAAAGCTGTGTATTGGGCTCGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTCCGCCTCCTCAGTAAGAAAAGCTGTGTATTGGGCTCGTGACT  750

seq1  CTATCCCCAGTAGCAAATAAGGGCAGCCCTGAGCAGGTCACATTGAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCAGTAGCAAATAAGGGCAGCCCTGAGCAGGTCACATTGAAAGT  800

seq1  GCTCAAGAGACATCGATGCAGTGACTAAACACACAGGCTGAGGCTGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAGACATCGATGCAGTGACTAAACACACAGGCTGAGGCTGACTT  850

seq1  TATCTCCAGAACCAACAG-ACTGGAATCTGTTTTTACAAATAAGCTCAAC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATCTCCAGAACCAACAGAACTGGAATCTGTTTTTACAAATAAGCTCAAC  900

seq1  ACAAAGAGAGATG-TTTAGGTCTAG-CCAGTTCCTAAAGAGTTTTT--AT  945
      ||||||||||||| ||||||||||| ||||||||||||||||||||   |
seq2  ACAAAGAGAGATGTTTTAGGTCTAGCCCAGTTCCTAAAGAGTTTTTTATT  950

seq1  TTTTTCGGG--AGATTGGATCTGT-GGTCCCAGGGTCAGCATAC-TACGT  991
      |||||||||   |||||||||||| ||||||||||||||||||| |||||
seq2  TTTTTCGGGGAGGATTGGATCTGTGGGTCCCAGGGTCAGCATACTTACGT  1000

seq1  AAG-CTCTGTACT-GAT-GAGCCAC--AAGTCTAAGGTTTTAGTTTTTAT  1036
      ||| ||||||||| ||| |||||||  | |||||||| ||||| ||||||
seq2  AAGCCTCTGTACTGGATGGAGCCACCAAGGTCTAAGG-TTTAG-TTTTAT  1048

seq1  TTA--TTTTTTATCGTCTTACATGTATCAACGATTG-CTTTTATCTGTGC  1083
      |||  ||||||||||   ||||| |||| ||||||| |||||||||  | 
seq2  TTATTTTTTTTATCGGTCTACAT-TATC-ACGATTGCCTTTTATCTTGGG  1096

seq1  CT--GTTAGAA--GCTGGGGATACGCTGGTGTACCACC-AATCGTGG-CT  1127
      ||  |||||||  ||| |||||||||||||||| |||| |||| ||| ||
seq2  CTTGGTTAGAAAGGCT-GGGATACGCTGGTGTATCACCAAATCCTGGTCT  1145

seq1  CCACTTAAATGTCTAGTTGGGCAAGA  1153
      |||||| |||||||||||||||||||
seq2  CCACTT-AATGTCTAGTTGGGCAAGA  1170

seq1: chr7_123743416_123743872
seq2: B6Ng01-185J10.g_73_355

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAA--AAAC  48
      ||||||||||||||||||||||||||||||||||||||| ||||  ||| 
seq2  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAA  50

seq1  CAAAACA-AAC--AAAAAAAAGTTTTAAATATTAGCAACTATGTCTGCCA  95
      ||||||| |||  ||||||||||||||||           |||      |
seq2  CAAAACAGAACAAAAAAAAAAGTTTTAAA-----------ATG------A  83

seq1  AATGGCTTGCCACCTGCCATTTGACTTTAGTATCTTAAGATGATAATACA  145
      ||                                  || | ||||| || 
seq2  AA---------------------------------AAATAAGATAA-AC-  98

seq1  ATTCTAAAATGTCTTAGCCCTGATGAACTATTTATTATCATGTTTCCTTT  195
           |||  |||                         || | | || | 
seq2  -----AAAGAGTC-----------------------CACACGGTACCCTG  120

seq1  TAGACTAAGAAAGCAACAAATCTCATATTTTAAGTTAGGAAGAACTTTTG  245
       ||                          || ||  |||| |||  | ||
seq2  GAG-------------------------GTTCAGGCAGGAGGAA--TGTG  143

seq1  TGATGATGACAGAAATGTAAAGTTATTGGATATGATTAGTAACTGAAAGT  295
       | ||| | || |  ||          || ||         | |||||  
seq2  AGTTGAAGCCA-ACCTG----------GGCTA--------CAGTGAAA--  172

seq1  TTGGTTTTTCGAGATAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAAA  345
                |||| |||||  ||||   |||  | | ||| ||| ||  
seq2  ---------TGAGACAGGGTGCCTCTAGGTAGCTCCGACTGCCCTAGA--  211

seq1  AGTCAATGGCTGGCAGCCATCTCTGTTATGGGAAGTCTAATTCTGTAGAC  395
                                         |||  ||||||||| 
seq2  -----------------------------------TCTCGTTCTGTAGAT  226

seq1  TAGGCTGGCCTCGAACTTAGAAATCTGACTACCTCTGCCTCCCAAGTGCT  445
      |||||||||||| || | | |||   ||  ||| |   || |  | ||||
seq2  TAGGCTGGCCTCCAATTAACAAA---GA--ACCCCCAGCTTCTGATTGCT  271

seq1  GGGATTAAAGGC  457
      ||||||||||||
seq2  GGGATTAAAGGC  283