BAC Information

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BAC

Clone NameB6Ng01-186B20
Chromosome19 (Build37)
Map Location 51,064,639 - 51,140,965
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433251, Sorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186B20.bB6Ng01-186B20.g
ACCGA011044GA011045
length1,1041,088
definitionB6Ng01-186B20.b B6Ng01-186B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,064,639 - 51,065,730)(51,139,876 - 51,140,965)
sequence
gaattctttgtaggttttctaaactttgtcgcagctcgggtcagcttcga
tacacaaatcttatacagaagcttgttttattgtttctaggactcttgtt
taattattgcttaccaagattttatcatccatgttaccatgtcgaatttc
ccttctgcccatcagttaaatcaacttttattagcatgagttagaacata
gaaaaaaaaataaaacagagccaatgaacacaggttatttgtttttaaga
tgcaaaggcagaaatatcacttactggttttaagatgaaatttttaaaat
gccgtggagtgaatataagaaattaattcattatcttttaaaattatatt
taatcatttttttacaatccaatcattttctccctcctggtctgcccctc
caacaattacgtatcccattaccccttcccacatctccaagaagatgctc
cccctattgggcaagctgatgatctgccccaccataagacacaagccata
gaggaattcattatgttttagaagataattttgtagataaactataatgt
atccagttcatagtcaggatattcccttcatgagtcaaatgtaatgggaa
agtgagggtaaaagaactgcaacaagctggcccccagcctgagtgattga
ttggctggggggagggctggccaccagcctgagtgattagctgtggtgat
gagggctagccaccagcctgtgtgcttggatggtgggagaacaggagagc
tgagggggtctaacggaaaaggaggtagctatgcttctaaaacagcatgt
taagttactcttatgaaggaaataataagctagtcgcacatgctaattaa
ataatgtattgttattgaaaatatatctcatcccagcttctatcacactt
tcaatatttgtaagtaatgtatagtagacccacactcattttggatgttt
ttgctatcagtatttggtgttctttggaatctatatttgagaagaccaca
aagactattttcttctttaccacctaaaacgtaactactgctgtttcact
tatgaaagggagagatgcttgctttgtattctactttgtagaacgcctgt
acct

gaattctcttatccctgttcatgtacatattgcttttggtagaagactag
atgctgaagagtgaatatttaaattgtataagtaattgaatagttaaata
tatttaaacacagggagctccatcctattccaatttcactggactcagta
aacgagtacacattttggccttataatagtgagccaagtgcagaagggaa
tgtcatgttgtaactatgactttggagaaatttactaatactgagtgcta
attttcctaatatttacagacatttttagaaaaatctacactgctaacta
cagagaacttctcacaacgtgtccttagattatggtaagagaaagagcga
gctggaattattatgctggggctgagacaaagccgttatggtagtatgaa
ggcaccgaggactcctcccttcctcttcttcctggccctcttactgactg
aatttctgaaaacaatatttctaaatgagggctcttatgatatcctggtg
tggaatatattccataagcaaaaagtataatcaataaaatgtcttgaaag
ctatgaaatgtcttgaaatgttggcctgattggcgggcagatgtcatgtg
ccgttcctgctttgtaagacaataacagtcccaacagaaaacaaatcctg
cagttttcttcaggctctctagttctgctagcgtattttctgccgacaaa
gtaccaccagctgatattcccttttatttttttcctacggagattctgtt
atgaaagtcatatcgcctgtcaccacagaagagcatcttggttttaaaaa
tagcacctgctggggttttgttaatcttcctggaaatggttgtgtgccat
ttgggtatttgcctgttcacttaatcttccctgcacatattgctctgaaa
aacataatttactggtttttattttcccctaatttaaaaatatcatctgt
ttttgagtggaaacagaacaattaatagaaattatgttttctgctttctg
aaatatctgcacagagagccaatagtcacctgtaaaagtattttttcaag
ctgtttattaaaccttaaattttcatgggagattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_51064639_51065730
seq2: B6Ng01-186B20.b_44_1147

seq1  GAATTCTTTGTAGGTTTTCTAAACTTTGTCGCAGCTCGGGTCAGCTTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAGGTTTTCTAAACTTTGTCGCAGCTCGGGTCAGCTTCGA  50

seq1  TACACAAATCTTATACAGAAGCTTGTTTTATTGTTTCTAGGACTCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATCTTATACAGAAGCTTGTTTTATTGTTTCTAGGACTCTTGTT  100

seq1  TAATTATTGCTTACCAAGATTTTATCATCCATGTTACCATGTCGAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTGCTTACCAAGATTTTATCATCCATGTTACCATGTCGAATTTC  150

seq1  CCTTCTGCCCATCAGTTAAATCAACTTTTATTAGCATGAGTTAGAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCCCATCAGTTAAATCAACTTTTATTAGCATGAGTTAGAACATA  200

seq1  GAAAAAAAAATAAAACAGAGCCAATGAACACAGGTTATTTGTTTTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATAAAACAGAGCCAATGAACACAGGTTATTTGTTTTTAAGA  250

seq1  TGCAAAGGCAGAAATATCACTTACTGGTTTTAAGATGAAATTTTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGCAGAAATATCACTTACTGGTTTTAAGATGAAATTTTTAAAAT  300

seq1  GCCGTGGAGTGAATATAAGAAATTAATTCATTATCTTTTAAAATTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGAGTGAATATAAGAAATTAATTCATTATCTTTTAAAATTATATT  350

seq1  TAATCATTTTTTTACAATCCAATCATTTTCTCCCTCCTGGTCTGCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTTTTTACAATCCAATCATTTTCTCCCTCCTGGTCTGCCCCTC  400

seq1  CAACAATTACGTATCCCATTACCCCTTCCCACATCTCCAAGAAGATGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTACGTATCCCATTACCCCTTCCCACATCTCCAAGAAGATGCTC  450

seq1  CCCCTATTGGGCAAGCTGATGATCTGCCCCACCATAAGACACAAGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTGGGCAAGCTGATGATCTGCCCCACCATAAGACACAAGCCATA  500

seq1  GAGGAATTCATTATGTTTTAGAAGATAATTTTGTAGATAAACTATAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCATTATGTTTTAGAAGATAATTTTGTAGATAAACTATAATGT  550

seq1  ATCCAGTTCATAGTCAGGATATTCCCTTCATGAGTCAAATGTAATGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTCATAGTCAGGATATTCCCTTCATGAGTCAAATGTAATGGGAA  600

seq1  AGTGAGGGTAAAAGAACTGCAACAAGCTGGCCCCCAGCCTGAGTGATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGTAAAAGAACTGCAACAAGCTGGCCCCCAGCCTGAGTGATTGA  650

seq1  TTGGCTGGGGGGAGGGCTGGCCACCAGCCTGAGTGATTAGCTGTGGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGGGGAGGGCTGGCCACCAGCCTGAGTGATTAGCTGTGGTGAT  700

seq1  GAGGGCTAGCCACCAGCCTGTGTGCTTGGATGGTGGGAGAACAGGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTAGCCACCAGCCTGTGTGCTTGGATGGTGGGAGAACAGGAGAGC  750

seq1  TGAGGGGGTCTAACGGAAAAGGAGGTAGCTATGCTTCTAAAACAGCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGTCTAACGGAAAAGGAGGTAGCTATGCTTCTAAAACAGCATGT  800

seq1  TAAGTTACTCTTATGAAGGAAATAATAAGCTAGTCGCACATGCTAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACTCTTATGAAGGAAATAATAAGCTAGTCGCACATGCTAATTAA  850

seq1  ATAATGTATTGTTATTGAAAATATATCTCATCCCAGCTTCTATCACAC-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATAATGTATTGTTATTGAAAATATATCTCATCCCAGCTTCTATCACACTT  900

seq1  TCAATATTTGTAAGTAATGTATAGTAGACCCACACTCATTTT-GATG-TT  947
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TCAATATTTGTAAGTAATGTATAGTAGACCCACACTCATTTTGGATGTTT  950

seq1  TTGCTATCAGTA-TTGGTGTTCTTT-GAATCTATATTTGAG-AGACCACA  994
      |||||||||||| |||||||||||| ||||||||||||||| ||||||||
seq2  TTGCTATCAGTATTTGGTGTTCTTTGGAATCTATATTTGAGAAGACCACA  1000

seq1  AAGACTATTT--CTCTTTACAACCAAAAACGTAACTACTGCTG-TTCAC-  1040
      ||||||||||   ||||||| ||| |||||||||||||||||| ||||| 
seq2  AAGACTATTTTCTTCTTTACCACCTAAAACGTAACTACTGCTGTTTCACT  1050

seq1  TATGAAA-GGAGAGATGCTTTGCTTTGTA-TCTACTTTGTAGAA-GGCTG  1087
      ||||||| |||||||||| |||||||||| |||||||||||||| | |||
seq2  TATGAAAGGGAGAGATGC-TTGCTTTGTATTCTACTTTGTAGAACGCCTG  1099

seq1  TACCT  1092
      |||||
seq2  TACCT  1104


seq1: chr19_51139876_51140965
seq2: B6Ng01-186B20.g_64_1151 (reverse)

seq1  TTTTTATCTCCCATGAAAATTTTAAGTTTTAATAAACAGCCTG-AAAAAT  49
      |||| |||||||||||||| |||||| ||||||||||||| || ||||||
seq2  TTTTAATCTCCCATGAAAA-TTTAAGGTTTAATAAACAGCTTGAAAAAAT  49

seq1  ACTTTTTACA-GTGACTATGGCCTCTCTGTTGCAGATATTTCAGAAAGCA  98
      || ||||||| |||||||| | ||||||| ||||||||||||||||||||
seq2  AC-TTTTACAGGTGACTATTGGCTCTCTG-TGCAGATATTTCAGAAAGCA  97

seq1  GAAAACATTATTTTCTATTAATTGTTTCTGTTTCCACTCAAAAACAGATG  148
      ||||||| || ||||||||||||| |||||||||||||||||||||||||
seq2  GAAAACA-TAATTTCTATTAATTG-TTCTGTTTCCACTCAAAAACAGATG  145

seq1  ATATTTTTAAATTAGGGGAAAATAAAAA-CAGTAAATTATGTTTTTCAGA  197
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATATTTTTAAATTAGGGGAAAATAAAAACCAGTAAATTATGTTTTTCAGA  195

seq1  GCAATATGTGCAGGGAAGATTAAGTGAACAGGCAAATACCCAAATGGCAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGTGCAGGGAAGATTAAGTGAACAGGCAAATACCCAAATGGCAC  245

seq1  ACAACCATTTCCAGGAAGATTAACAAAACCCCAGCAGGTGCTATTTTTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATTTCCAGGAAGATTAACAAAACCCCAGCAGGTGCTATTTTTAA  295

seq1  AACCAAGATGCTCTTCTGTGGTGACAGGCGATATGACTTTCATAACAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGATGCTCTTCTGTGGTGACAGGCGATATGACTTTCATAACAGAA  345

seq1  TCTCCGTAGGAAAAAAATAAAAGGGAATATCAGCTGGTGGTACTTTGTCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTAGGAAAAAAATAAAAGGGAATATCAGCTGGTGGTACTTTGTCG  395

seq1  GCAGAAAATACGCTAGCAGAACTAGAGAGCCTGAAGAAAACTGCAGGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAATACGCTAGCAGAACTAGAGAGCCTGAAGAAAACTGCAGGATT  445

seq1  TGTTTTCTGTTGGGACTGTTATTGTCTTACAAAGCAGGAACGGCACATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGTTGGGACTGTTATTGTCTTACAAAGCAGGAACGGCACATGA  495

seq1  CATCTGCCCGCCAATCAGGCCAACATTTCAAGACATTTCATAGCTTTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCGCCAATCAGGCCAACATTTCAAGACATTTCATAGCTTTCAA  545

seq1  GACATTTTATTGATTATACTTTTTGCTTATGGAATATATTCCACACCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTATTGATTATACTTTTTGCTTATGGAATATATTCCACACCAGG  595

seq1  ATATCATAAGAGCCCTCATTTAGAAATATTGTTTTCAGAAATTCAGTCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATAAGAGCCCTCATTTAGAAATATTGTTTTCAGAAATTCAGTCAG  645

seq1  TAAGAGGGCCAGGAAGAAGAGGAAGGGAGGAGTCCTCGGTGCCTTCATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGCCAGGAAGAAGAGGAAGGGAGGAGTCCTCGGTGCCTTCATAC  695

seq1  TACCATAACGGCTTTGTCTCAGCCCCAGCATAATAATTCCAGCTCGCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAACGGCTTTGTCTCAGCCCCAGCATAATAATTCCAGCTCGCTCT  745

seq1  TTCTCTTACCATAATCTAAGGACACGTTGTGAGAAGTTCTCTGTAGTTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTACCATAATCTAAGGACACGTTGTGAGAAGTTCTCTGTAGTTAG  795

seq1  CAGTGTAGATTTTTCTAAAAATGTCTGTAAATATTAGGAAAATTAGCACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGATTTTTCTAAAAATGTCTGTAAATATTAGGAAAATTAGCACT  845

seq1  CAGTATTAGTAAATTTCTCCAAAGTCATAGTTACAACATGACATTCCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAGTAAATTTCTCCAAAGTCATAGTTACAACATGACATTCCCTT  895

seq1  CTGCACTTGGCTCACTATTATAAGGCCAAAATGTGTACTCGTTTACTGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTGGCTCACTATTATAAGGCCAAAATGTGTACTCGTTTACTGAG  945

seq1  TCCAGTGAAATTGGAATAGGATGGAGCTCCCTGTGTTTAAATATATTTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAAATTGGAATAGGATGGAGCTCCCTGTGTTTAAATATATTTAA  995

seq1  CTATTCAATTACTTATACAATTTAAATATTCACTCTTCAGCATCTAGTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATTACTTATACAATTTAAATATTCACTCTTCAGCATCTAGTCT  1045

seq1  TCTACCAAAAGCAATATGTACATGAACAGGGATAAGAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAAAAGCAATATGTACATGAACAGGGATAAGAGAATTC  1088


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