BAC Information

Click to search

BAC

Clone NameB6Ng01-186D15
Chromosome19 (Build37)
Map Location 35,330,828 - 35,498,105
singlet/doubletdoublet
Overlap geneLOC100042292
Upstream geneFas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186D15.bB6Ng01-186D15.g
ACCGA011129GA011130
length1,0391,055
definitionB6Ng01-186D15.b B6Ng01-186D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,330,828 - 35,331,875)(35,497,044 - 35,498,105)
sequence
gaattctctctctctctctcctatctagtgcataaaatttcttgctcaat
tcactcagcttttaaagagccctacacagtgagaaaaacacaaaccactg
attggttgataaaaccttctagaagaaaaagctggatagtgaagtgtgct
gtagttccaacataaagcctcatatgggagaaattaaaaataggggaaaa
gtagaaatggcaaaactgccagaccataatataataagtccagctccatg
gctcttatttcaatagctgttaaggagaaacttcacctttagagtcataa
agtaacagtattggggaggaaatagattttataaatgggtcaactgagtg
agaaagtaaacaaatgacccatgctgggtggcacagtttgtgcatagtag
caacaagaaagaggaaacccccacattctggcacctagttactgttttca
ctgaaaaacatgtggaaactaattctttggtctatgtgatctacagctaa
ccaatattttgggacttgcgattctggggatatatataagcaagcagaaa
ggatttctctctgaatataggctgcaaatctgcagcaagagtgagatata
aactctctcttttcatttgagcaattcagggaggggataatcttttacta
aaggcaaagaaaagtgttaaaattgattcttgatattgatataacatatt
ctcttcttttgtgcaaatggctaagagcctggaaaataattcaagatcat
ctcctttaaacttttcaatcagccaagtcagttctgactgaatttagagg
ttttgctgtctgatggaaagtttgagaataaataaatctcctttataagc
ttattctcacagttggcttcaattctatttcagtctcttaaaaccaacat
atcacagtataagtagagaaattatggattatgtttagtgtattcccaac
attttggagataatcttggactctttcatattcagcaaatattgccatgc
cattggaatggatatggatgagatgatgtgagtaaaatg
gaattctcagatgcctagcaaatgtataataggctttaaaaataatggtt
atttacctgtgtggattacatttatttctttagtgagagggttgcccatg
cccctacacacgtgtggtagtcaaaagccagcttcctagagtcaattttt
ctccttccactatgtgttttctgggaagcaaagtgagggcatcagatcta
gatcacccttggcctgctgagcgtctaccctgtccataaactagtattta
aaaaaatgaaacaatgaagacaattttattaaattttgtctaaatttctg
ggtgtgagacattcttttattttactcttgttctgcatgtttgtaatatt
tgttaggctttaaaatcacatttttatatttcttattttatttgtgtttg
tgtgtgtgtgtaaaaaatcaagttcattctttgtggttcttttccctgaa
aaactcctgaaaagcctacctggctcccccatactctgtgcttctgggtg
gccaaactggcaacatagatgttaggaatataaattgggctttttgtgga
atcatcaaagcaccactcatagaagcagaactagttgatatacatcagta
gtttctatgtctccacgtctttgttgatctatactgatccttaggtttct
tgttctatacttaaccctcaatgaactgcttaatgcctgactacttctat
aaggatagaattctttattcaggaccaatcaagtgctaatcctttcacca
atgcaagagaactgatatacaataacgctattgggctcattattttcaat
tgcttcagagtgagataaagagaaagtatttataacattcgacttttaag
taatttctataggtgaacgtcaagaagaattaccatgcactaagtcacac
agtgcattgattggcagctaatgaaatatcttcatatgtaaaagaaactt
gtgaacctagcattcactatttaacaaccaccaccttaatatggatctag
acaatgatattttagacgaacggacagaattcataccagtaacttcccta
ggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35330828_35331875
seq2: B6Ng01-186D15.b_39_1077

seq1  GAATTCTCTCTCTCTCTCTCCTATCTAATGCATAAAATTTCTTGCTCAAT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTCTCTCTCTCTCTCCTATCTAGTGCATAAAATTTCTTGCTCAAT  50

seq1  TCACTCAGCTTTTAAAGAGCCATACACAGTGAGAAAAACACAAACCACTG  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCACTCAGCTTTTAAAGAGCCCTACACAGTGAGAAAAACACAAACCACTG  100

seq1  ATTGGTTGATAAAACCTTCTAGAAGAAAAAGCTGGATAGTGAAGTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGATAAAACCTTCTAGAAGAAAAAGCTGGATAGTGAAGTGTGCT  150

seq1  GTAGTTCCAACATAAAGCCTCATATGGGAGAAATTAAAAATAGGGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCAACATAAAGCCTCATATGGGAGAAATTAAAAATAGGGGAAAA  200

seq1  GTAGAAATGGCAAAACTGCCAGACCATAATATAATAAGTCCAGCTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATGGCAAAACTGCCAGACCATAATATAATAAGTCCAGCTCCATG  250

seq1  GCTCTTATTTCAATAGCTGTTAAGGAGAAACTTCACCTTTAGAGTCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATTTCAATAGCTGTTAAGGAGAAACTTCACCTTTAGAGTCATAA  300

seq1  AGTAACAGTATTGGGGAGGAAATAGATTTTATAAATGGGTCAACTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGTATTGGGGAGGAAATAGATTTTATAAATGGGTCAACTGAGTG  350

seq1  AGAAAGTAAACAAATGACCCATGCTGGGTGGCACAGTTTGTGCATAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAAACAAATGACCCATGCTGGGTGGCACAGTTTGTGCATAGTAG  400

seq1  CAACAAGAAAGAGGAAACCCCCACATTCTGGCACCTAGTTACTGTTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAAAGAGGAAACCCCCACATTCTGGCACCTAGTTACTGTTTTCA  450

seq1  CTGAAAAACATGTGGAAACTAATTCTTTGGTCTATGTGATCTACAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACATGTGGAAACTAATTCTTTGGTCTATGTGATCTACAGCTAA  500

seq1  CCAATATTTTGGGACTTGCGATTCTGGGGATATATATAAGCAAGCAAAAA  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAATATTTTGGGACTTGCGATTCTGGGGATATATATAAGCAAGCAGAAA  550

seq1  GGATTTCTCTCTGAATATAGGCTGCAAATCTGCAGCAAGAGTGAGATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTCTCTGAATATAGGCTGCAAATCTGCAGCAAGAGTGAGATATA  600

seq1  AACTCTCTCTTTTCATTTGAGCAATTCAGGGAGGGGATAATCTTTTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTCTTTTCATTTGAGCAATTCAGGGAGGGGATAATCTTTTACTA  650

seq1  AAGGCAAAGAAAAGTGTTAAAATTGATTCTTGATATTGATATAACATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGAAAAGTGTTAAAATTGATTCTTGATATTGATATAACATATT  700

seq1  CTCTTCTTTTGTGCAAATGGCTAAGAGCCTGGAAAATAATTCAAGATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTTGTGCAAATGGCTAAGAGCCTGGAAAATAATTCAAGATCAT  750

seq1  CTCCTTTAAACTTTTCAATCAGCCAAGTCAGTTCTGACTGAATTTAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAAACTTTTCAATCAGCCAAGTCAGTTCTGACTGAATTTAGAGG  800

seq1  TTTTGCTGTCTGATGGAAAGTTTGAGAATAAATAAATCTCCTTTATAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTCTGATGGAAAGTTTGAGAATAAATAAATCTCCTTTATAAGC  850

seq1  TTATTCTCACAGTTGGCTTCAATTCTATTTCAGTCTCTTAAAACCAACAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTATTCTCACAGTTGGCTTCAATTCTATTTCAGTCTCTTAAAACCAAC-A  899

seq1  TATCACAGTATAAAGTAGAGAAATAATGGATTATGTTTAGTGTATTCCCA  950
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TATCACAGTAT-AAGTAGAGAAATTATGGATTATGTTTAGTGTATTCCCA  948

seq1  ACATTTTGGAGATTAATCTTGGACTCTTTCAATATTTCAGCAAATAATTG  1000
      |||||||||||| ||||||||||||||||| ||| |||||||||| ||||
seq2  ACATTTTGGAGA-TAATCTTGGACTCTTTC-ATA-TTCAGCAAAT-ATTG  994

seq1  CCAATGCCATTGGAATGGATATGGATGAAGATGAATGTGAGAAAAATG  1048
      || |||||||||||||||||||||||| ||||| ||||||| ||||||
seq2  CC-ATGCCATTGGAATGGATATGGATG-AGATG-ATGTGAGTAAAATG  1039

seq1: chr19_35497044_35498105
seq2: B6Ng01-186D15.g_63_1117 (reverse)

seq1  GCACCTAGTG-AGTTATTGGTATGATTTTTTTCC-TTTGTCTAAAATTAT  48
      |||||||| | ||||| |||||||| || | ||| || |||||||| |||
seq2  GCACCTAGGGAAGTTACTGGTATGAATTCTGTCCGTTCGTCTAAAA-TAT  49

seq1  CATTCTTTTAGTTTCAATATTAA-GTGGTGGTTTTGTTAAATATTGAATT  97
      ||||  | |||  || ||||||| |||||||  |||||||||| ||||| 
seq2  CATT-GTCTAG-ATCCATATTAAGGTGGTGG--TTGTTAAATAGTGAATG  95

seq1  CTAGGTTCACAAAGTTTTCTTTTTACATATTGAAGATATTTCATTAGCTG  147
      |||||||||| ||||||   ||||||||| ||||||||||||||||||||
seq2  CTAGGTTCAC-AAGTTT--CTTTTACATA-TGAAGATATTTCATTAGCTG  141

seq1  CCAATCATTGCAATTTCTGA-TTAGTCCATGGTAATTCTTCTTGTTGTTC  196
      ||||||| |||| | | ||| ||||| |||||||||||||||||  ||||
seq2  CCAATCAATGCACTGTGTGACTTAGTGCATGGTAATTCTTCTTGACGTTC  191

seq1  ACCTATAGAAATTACTTAAAAGTCGAATGTTATAAATACTTTCACTTTAT  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTATAGAAATTACTTAAAAGTCGAATGTTATAAATACTTTCTCTTTAT  241

seq1  ATTTACTTTTTAGCAATTGAAAATAATGAGCCCAATATTGTTATTTTTAT  296
        | ||| |  ||||||||||||||||||||||||||  |||| || |||
seq2  -CTCACTCTGAAGCAATTGAAAATAATGAGCCCAATAGCGTTA-TTGTAT  289

seq1  ATCAGTTCTCTTGAATTGGTGAAAGGATTAGCACTTGATTGGTCCTGAAT  346
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCTCTTGCATTGGTGAAAGGATTAGCACTTGATTGGTCCTGAAT  339

seq1  AAAGAATTCTATCCTTATAGAAGTAGTCAGGCATTAAGCAGTTCACTGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGAATTCTATCCTTATAGAAGTAGTCAGGCATTAAGCAGTTCATTGAG  389

seq1  GGTTAAGTATAGAACAAGAAACCTAAGGATCAGTATAGAACAACAAAGAC  446
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTTAAGTATAGAACAAGAAACCTAAGGATCAGTATAGATCAACAAAGAC  439

seq1  GTGGAGACATTGAAACTACTGATGTATATCAACTAGTTCTGCTTCTATGA  496
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACATAGAAACTACTGATGTATATCAACTAGTTCTGCTTCTATGA  489

seq1  GTGGTGCTTTGATGATTCCACAAAAAGCCCAATTTATATTCCTAACATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTTTGATGATTCCACAAAAAGCCCAATTTATATTCCTAACATCT  539

seq1  ATGTTGCCAGTTTGGCCACCCAGAAGCACAGAGTATGGGGGAGCCAGGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCAGTTTGGCCACCCAGAAGCACAGAGTATGGGGGAGCCAGGTA  589

seq1  GGCTTTTCAGGAGTTTTTCAGGGAAAAGAACCACAAAGAATGAACTTGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAGGAGTTTTTCAGGGAAAAGAACCACAAAGAATGAACTTGAT  639

seq1  TTTTTACACACACACACAAACACAAATAAAATAAGAAATATAAAAATGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACACACACACACAAACACAAATAAAATAAGAAATATAAAAATGTG  689

seq1  ATTTTAAAGCCTAACAAATATTACAAACATGCAGAACAAGAGTAAAATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCCTAACAAATATTACAAACATGCAGAACAAGAGTAAAATAA  739

seq1  AAGAATGTCTCACACCCAGAAATTTAGACAAAATTTAATAAAATTGTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTCTCACACCCAGAAATTTAGACAAAATTTAATAAAATTGTCTT  789

seq1  CATTGTTTCATTTTTTTAAATACTAGTTTATGGACAGGGTAGACGCTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCATTTTTTTAAATACTAGTTTATGGACAGGGTAGACGCTCAG  839

seq1  CAGGCCAAGGGTGATCTAGATCTGATGCCCTCACTTTGCTTCCCAGAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAAGGGTGATCTAGATCTGATGCCCTCACTTTGCTTCCCAGAAAA  889

seq1  CACATAGTGGAAGGAGAAAAATTGACTCTAGGAAGCTGGCTTTTGACTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTGGAAGGAGAAAAATTGACTCTAGGAAGCTGGCTTTTGACTAC  939

seq1  CACACGTGTGTACTGGCATGGGCAACCCTCTCACTAAAGAAATAAATGTA  996
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  CACACGTGTGTAGGGGCATGGGCAACCCTCTCACTAAAGAAATAAATGTA  989

seq1  ATCCACACAGGTAAATAACCATTATTTTTAAAGCCTATTATACATTTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACAGGTAAATAACCATTATTTTTAAAGCCTATTATACATTTGCT  1039

seq1  AGGCATCTGAGAATTC  1062
      ||||||||||||||||
seq2  AGGCATCTGAGAATTC  1055