BAC Information

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BAC

Clone NameB6Ng01-186N04
Chromosome19 (Build37)
Map Location 34,149,852 - 34,294,752
singlet/doubletdoublet
Overlap geneLipn, Ankrd22, Stambpl1
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462
Downstream geneActa2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186N04.bB6Ng01-186N04.g
ACCGA011567GA011568
length1,0691,190
definitionB6Ng01-186N04.b B6Ng01-186N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,149,852 - 34,150,906)(34,293,565 - 34,294,752)
sequence
gaattcagatgaaataaatacagagtcttgaatatgttactcatcttcca
ctgaatgtctttaggagacttagtcacgtgacgttgtgacattttagatt
aggtaaaacagcaagaaaaattggatcttataatatttccatattgcata
agtataaattatcaccattcctattaatcaccacaaagagaggctgacct
gttctttatgcttacaggcatttttacaagcctgggagaggaagtgagca
ggagagaacacagataaaaagattatcaacgtaccaataagagaaccaaa
ggaagccagacaattacaccataattatatcatatccagtacttcttgag
catttgctatgtttaggggtctgtgttcaatacttttcctcccttgatct
cccatacaaccccactgatgcagaacatagattcagaggaggttggttag
accgcaccaatgagatgtagagactcttgcggggggggggggcaatttaa
aaggagaaagatgaaacttgcatctgggaaagtgggcagaacttacattc
ttactgctcttcaaagaaaatacagtaaatgagaccattataccctgata
gaacctgttacacttgggcatgaacatgcttagttaaagacttcttgcat
ttggggcagaaggttgtttgtttgtttgtttttcaagacagggtttctct
gtatagctctgactgtcctggaactcactcttgtagaccaggctggcctc
gaactcagaaatctgcctgcctctgcctcccatgtgctgggattaaaggt
gtacgccaccactgccctgttctcatatgtgtttgtgagtgtgtcttcca
gcagagactgaacaatgcgttcttgggtaaagtaaatctacccagatacc
cactggtagccatcctcagatgcaatactggatcccttagcctttatcct
caaggttattaatgggcacaaaggcactgctgagaacgacaaatggtaga
caccttgaccttctggtatacctggtggatccaagggaaaacaatctcca
ccttgggaagctgctaaca
gaattcacagtgaatggctgctccatgctgtcctgtctgcaaaggcaagg
tgctcactccttctcagtcacttcatctgtttgaaagacacagagcaaag
acgaggtcactctaggagaacataagtctcgatttccaaggtccaagctc
aaaggaaggtgaaccctttgagaaaggtacacaaccagaatgcttcaagc
gactatggaggtcttctccagaaaatataaaatgttgggtgcttatgcgt
gcttgaaattgatcttaataggtagagggatgcagggaataaaggctcga
tgagaagagtgtatggcactgccgtgtgctggtttatttagaatcctatg
caaggctatatacaaagcaggcttacttccttcaaaaacagaaaaagaag
aacatagttgttactagcaagaatgctgtggcaactgactcttcacctgg
tgccaggctgggtttaaccacccttaaagctgcatcgggcagacgtatca
gacagttgtgtttgtccagtcattgtgagccatggcttgtggagtcacct
ccccttgagaatgcacaagactgacctgtcctagtgggtcttctacctat
ggaacatgataaatgaatattgctcccacaattatgttccattatatatc
acagatgaagatatgttgcagatatactaaagccacttaagcagttggtc
ttaattaaaaggccatgaggtcttcaccagaggaagtgggactttgaaca
gcttgttttgagagtcagatgccaggagttctgcagctgcaggaaagcta
attctatcccaaaccacaagaacttcaaagagggagccacaaccacagcc
acagctgagcccctacccaccaacacccaaattacagatccctaatctgt
ccttacaaggtcaacagctcaattcaaccttaagataccatagagaatta
tgtaagctaagctcacatacgtgtctcacaaaaccctggagatgaatata
gacggtcttagccattaagtcaggaaatcatatgggtagcaatagaaaat
caggccacctgtgggtgactacaggtaagtaatactgatgggggccaatc
tggaaacactgagagtaaggtacctgaatgaaatgctgtacacgattcat
gggtagcaggtatacttagaatgtgcccaccccctatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34149852_34150906
seq2: B6Ng01-186N04.b_43_1111

seq1  GAATTCAGATGAAATAAATACAGAGTCTTGAATATGTTACTCATCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGAAATAAATACAGAGTCTTGAATATGTTACTCATCTTCCA  50

seq1  CTGAATGTCTTTAGGAGACTTAGTCACGTGACGTTGTGACATTTTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTCTTTAGGAGACTTAGTCACGTGACGTTGTGACATTTTAGATT  100

seq1  AGGTAAAACAGCAAGAAAAATTGGATCTTATAATATTTCCATATTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACAGCAAGAAAAATTGGATCTTATAATATTTCCATATTGCATA  150

seq1  AGTATAAATTATCACCATTCCTATTAATCACCACAAAGAGAGGCTGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATTATCACCATTCCTATTAATCACCACAAAGAGAGGCTGACCT  200

seq1  GTTCTTTATGCTTACAGGCATTTTTACAAGCCTGGGAGAGGAAGTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATGCTTACAGGCATTTTTACAAGCCTGGGAGAGGAAGTGAGCA  250

seq1  GGAGAGAACACAGATAAAAAGATTATCAACGTACCAATAAGAGAACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACACAGATAAAAAGATTATCAACGTACCAATAAGAGAACCAAA  300

seq1  GGAAGCCAGACAATTACACCATAATTATATCATATCCAGTACTTCTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGACAATTACACCATAATTATATCATATCCAGTACTTCTTGAG  350

seq1  CATTTGCTATGTTTAGGGGTCTGTGTTCAATACTTTTCCTCCCTTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTATGTTTAGGGGTCTGTGTTCAATACTTTTCCTCCCTTGATCT  400

seq1  CCCATACAACCCCACTGATGCAGAACATAGATTCAGAGGAGGTTGGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACAACCCCACTGATGCAGAACATAGATTCAGAGGAGGTTGGTTAG  450

seq1  ACCGCACCAATGAGATGTAGAGACTCTTGCGGGGGGGGGGGGCAATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACCAATGAGATGTAGAGACTCTTGCGGGGGGGGGGGGCAATTTAA  500

seq1  AAGGAGAAAGATGAAACTTGCATCTGGGAAAGTGGGCAGAACTTACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGATGAAACTTGCATCTGGGAAAGTGGGCAGAACTTACATTC  550

seq1  TTACTGCTCTTCAAAGAAAATACAGTAAATGAGACCATTATACCCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCTTCAAAGAAAATACAGTAAATGAGACCATTATACCCTGATA  600

seq1  GAACCTGTTACACTTGGGCATGAACATGCTTAGTTAAAGACTTCTTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTTACACTTGGGCATGAACATGCTTAGTTAAAGACTTCTTGCAT  650

seq1  TTGGGGCAGAAGGTTGTTTGTTTGTTTGTTTTTCAAGACAGGGTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAGAAGGTTGTTTGTTTGTTTGTTTTTCAAGACAGGGTTTCTCT  700

seq1  GTATAGCTCTGACTGTCCTGGAACTCACTC-TGTAGACCAGGCTGGCCTC  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTATAGCTCTGACTGTCCTGGAACTCACTCTTGTAGACCAGGCTGGCCTC  750

seq1  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCATGTGCTGGGATTAAAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCATGTGCTGGGATTAAAGGT  800

seq1  GTACGCCACCACTGCCCTGTTC-CATATGTGTTTGTGAGTGTGTC-TCCA  847
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GTACGCCACCACTGCCCTGTTCTCATATGTGTTTGTGAGTGTGTCTTCCA  850

seq1  GCAGAGACTGAACAATGCG-TCTTGGG-AAAGTAAA-CTACCCAGATACC  894
      ||||||||||||||||||| ||||||| |||||||| |||||||||||||
seq2  GCAGAGACTGAACAATGCGTTCTTGGGTAAAGTAAATCTACCCAGATACC  900

seq1  CACT-GTAG-CATCCTCAGATGCAATACT-GATCCC-TAGCC-TTATCCT  939
      |||| |||| ||||||||||||||||||| |||||| ||||| |||||||
seq2  CACTGGTAGCCATCCTCAGATGCAATACTGGATCCCTTAGCCTTTATCCT  950

seq1  CAAGGTTATAAATGGGCACAATGCCACTGCTGAGGACAGCAAATGG-AGA  988
      ||||||||| ||||||||||| | |||||||||| ||  ||||||| |||
seq2  CAAGGTTATTAATGGGCACAAAGGCACTGCTGAGAACGACAAATGGTAGA  1000

seq1  CACCTTGGCCTTTCTGGTATCACT-GTGGATCCAA-GGAAAAC-ATCTTC  1035
      ||||||| || |||||||||  || |||||||||| ||||||| |||| |
seq2  CACCTTGACC-TTCTGGTATACCTGGTGGATCCAAGGGAAAACAATCTCC  1049

seq1  ACTTTGGGAAGCTGGTAACA  1055
      || ||||||||||| |||||
seq2  ACCTTGGGAAGCTGCTAACA  1069

seq1: chr19_34293565_34294752
seq2: B6Ng01-186N04.g_67_1256 (reverse)

seq1  GCTAT--GGGGTGGG--CATTCTTTAGTTTACCTGCTAACCCATTTAATC  46
      |||||  ||||||||  ||||| | ||| |||||||| ||||| | ||||
seq2  GCTATAGGGGGTGGGCACATTC-TAAGTATACCTGCT-ACCCA-TGAATC  47

seq1  CTTGTTACAGCAATATCA-TCA-GTACCTTTACTTCTCAGTGTTT-CAGA  93
       |   |||||| || ||| ||| ||||| |||| ||||||||||| ||||
seq2  GT--GTACAGC-ATTTCATTCAGGTACC-TTAC-TCTCAGTGTTTCCAGA  92

seq1  T---GCCCCAACAGTATAACTTACCTGTAGTCA--CACAGGTGG-CTGAT  137
      |    ||||| |||||| |||||||||||||||  ||||||||| |||||
seq2  TTGGCCCCCATCAGTATTACTTACCTGTAGTCACCCACAGGTGGCCTGAT  142

seq1  TTTCTATTGCTA-CCATATTGATTTCCTTGAACTTAATGGCTAAAGACCG  186
      |||||||||||| ||||| |||||||||   ||||||||||| |||||||
seq2  TTTCTATTGCTACCCATA-TGATTTCCT--GACTTAATGGCT-AAGACCG  188

seq1  TCTATATTCATCT-CAGGGTTTTGTGAGACACGTATGTGAGCTTAGCTTA  235
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTATATTCATCTCCAGGGTTTTGTGAGACACGTATGTGAGCTTAGCTTA  238

seq1  CATAAATTCTCTATGGTATCTTAAGGTTGAAATTGAGCTGTTGACCTTGT  285
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAT-AATTCTCTATGGTATCTTAAGGTTG-AATTGAGCTGTTGACCTTGT  286

seq1  AAGGACAGATTAGGGATCTGTAATTTGGGTGTTGGTGGGTAGGGGCTCAG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGATTAGGGATCTGTAATTTGGGTGTTGGTGGGTAGGGGCTCAG  336

seq1  CTGTGGCTGTGGTTGTGGCT-CCTCTTTGAAGTTCTTGTGGTTTGGGATA  384
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGTGGCTGTGGTTGTGGCTCCCTCTTTGAAGTTCTTGTGGTTTGGGATA  386

seq1  GAATTAGCTTTCCTGCAGCTGCAGAACTCCTGGCATCTGACTCTCAAAAC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGCTTTCCTGCAGCTGCAGAACTCCTGGCATCTGACTCTCAAAAC  436

seq1  AAGCTGTTCAAAGTCCCACTTCCTCTGGTGAAGACCTCATGGCCTTTTAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTCAAAGTCCCACTTCCTCTGGTGAAGACCTCATGGCCTTTTAA  486

seq1  TTAAGACCAACTGCTTAAGTGGCTTTAGTATATCTGCAACATATCTTCAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCAACTGCTTAAGTGGCTTTAGTATATCTGCAACATATCTTCAT  536

seq1  CTGTGATATATAATGGAACATAATTGTGGGAGCAATATTCATTTATCATG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATATATAATGGAACATAATTGTGGGAGCAATATTCATTTATCATG  586

seq1  TTCCATAGGTAGAAGACCCACTAGGACAGGTCAGTCTTGTGCATTCTCAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGGTAGAAGACCCACTAGGACAGGTCAGTCTTGTGCATTCTCAA  636

seq1  GGGGAGGTGACTCCACAAGCCATGGCTCACAATGACTGGACAAACACAAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTGACTCCACAAGCCATGGCTCACAATGACTGGACAAACACAAC  686

seq1  TGTCTGATACGTCTGCCCGATGCAGCTTTAAGGGTGGTTAAACCCAGCCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATACGTCTGCCCGATGCAGCTTTAAGGGTGGTTAAACCCAGCCT  736

seq1  GGCACCAGGTGAAGAGTCAGTTGCCACAGCATTCTTGCTAGTAACAACTA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGGTGAAGAGTCAGTTGCCACAGCATTCTTGCTAGTAACAACTA  786

seq1  TGTTCTTCTTTTTCTGTTTTTGAAGGAAGTAAGCCTGCTTTGTATATAGC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTTTTTCTGTTTTTGAAGGAAGTAAGCCTGCTTTGTATATAGC  836

seq1  CTTGCATAGGATTCTAAATAAACCAGCACACGGCAGTGCCATACACTCTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAGGATTCTAAATAAACCAGCACACGGCAGTGCCATACACTCTT  886

seq1  CTCATCGAGCCTTTATTCCCTGCATCCCTCTACCTATTAAGATCAATTTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGAGCCTTTATTCCCTGCATCCCTCTACCTATTAAGATCAATTTC  936

seq1  AAGCACGCATAAGCACCCAACATTTTATATTTTCTGGAGAAGACCTCCAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGCATAAGCACCCAACATTTTATATTTTCTGGAGAAGACCTCCAT  986

seq1  AGTCGCTTGAAGCATTCTGGTTGTGTACCTTTCTCAAAGGGTTCACCTTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCTTGAAGCATTCTGGTTGTGTACCTTTCTCAAAGGGTTCACCTTC  1036

seq1  CTTTGAGCTTGGACCTTGGAAATCGAGACTTATGTTCTCCTAGAGTGACC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTTGGACCTTGGAAATCGAGACTTATGTTCTCCTAGAGTGACC  1086

seq1  TCGTCTTTGCTCTGTGTCTTTCAAACAGATGAAGTGACTGAGAAGGAGTG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTTGCTCTGTGTCTTTCAAACAGATGAAGTGACTGAGAAGGAGTG  1136

seq1  AGCACCTTGCCTTTGCAGACAGGACAGCATGGAGCAGCCATTCACTGTGA  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTGCCTTTGCAGACAGGACAGCATGGAGCAGCCATTCACTGTGA  1186

seq1  ATTC  1188
      ||||
seq2  ATTC  1190