BAC Information

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BAC

Clone NameB6Ng01-189F05
Chromosome19 (Build37)
Map Location 25,167,389 - 25,295,757
singlet/doubletdoublet
Overlap geneDock8
Upstream geneTjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, LOC100042503
Downstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189F05.bB6Ng01-189F05.g
ACCGA013380GA013381
length1,1111,079
definitionB6Ng01-189F05.b B6Ng01-189F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,167,389 - 25,168,510)(25,294,689 - 25,295,757)
sequence
gaattcatgggaaacttagcctctcttcagttctttctacggagccttgg
tggtgagctttgggaggagagaagccatgtttcatgtgctcacagctctt
ctgcccagcagccacctcatgcagacctttggaataaatgatgaatgagt
gaaggaacgaatgctggtggtcaagaacactgctcagtgtctggctccag
cccttggtgcccatgtttccagtgtgcttcatctctcagggccagccttc
tcttaacgctgctggccatggcataagctttcaaaccgcttttgttgaaa
gagactttctaatggggctacccatgaaaccgttgtccattgagcagctc
tgtgagacttcctttgaaactccattgcatttacctctgtcagtggaata
gtcagagaaatagtttctgcttcacttggtgcctgttaagaatgtgggcc
cagggtctgtgttgaccagatttctgcttcaggcgtctcagctaatgaca
caggctaagggggctaagtcttagcatctaagttcacttcagttttcttt
gagtaaagaattggaacatttcagacttttccctttctttgccctaacca
cggtgcccatagccatgaaaatcaattgtcagctccttaacgtgacgcaa
actggcagctatggctagcgttccttagcagaccgaagagacgaaacgtc
tcaaggcatttctttctgtctgtcaaattcagagaagcagccctaacagg
aagtacaagtgcacacttacaggccatttaatctgttcatttatttactg
tgtggaaaggttttagttccaggcctgacttttacagagaccatgtctca
tttttactttgtagcaataataaagaaatgagcttttcacttcctacatg
tatctcctgggttggttttataaaaataacttttattgcatttttattgt
gatataatacatgttttatgttaaaaaaatagaacttcctcatcagcagt
aggagaacaataaaaacacacatatccatcacatagaaaccacagtagca
ttgctgttatctctttttatatgcctgtgcttttcctactgtgaaacttc
tgtggtagtct
gaattcagatcccagcatccatgtcagacagctgaaaaccacatgcaaca
ccaggtccaggacatctaataccctttttggggttctacaggcactagca
ggcacacataaacacacataaacacacacacacacacacttaaaaaaaaa
aaaaaaagcagtgagctggtggtatcaagtccatgccgtgggtcttgcct
ctctttgagcaaattctcctgtcatattctttccacaaaagaagaggaga
attgacccagggaggactatagtcctcagctctttagtcagtgatccaat
ctgagccctactgaaggctgtcctccctctttggtgagaatcacatgatt
gacatgtatatctgtaggcagtatggcctccaatatacggagaagcccca
aagactgagaagtgaggagctgtagtgacagagtccctggcctccagccc
agctcttacaggtcaacgggcaaccccagtgatttccacagactcccttc
tcctcctaagatcctgacagctgactttctggcttgcaaatgcaagaatt
ttgactgacagcttaccagtcattggccctgacaattagaggaccaccac
agcagcacagatgagtgattttgaagaattttataaataataatagacat
taaaccacgtgaatgatatgctttacagcaattagttaattaatgattaa
ctagtgtcttagtcagggtttctattcctacacaaacatcatgaccaaga
agcaagtttggggaggaaaggatttattcagcttacactttccatgctgc
tgttcatcaccaaaggaagttaggacttggatacttcagcaggtcaggaa
gcaggagctgatgcagaggctcatgggagggatgttacttattggcttgc
tccccttggcttgctcagcctgctcttcttatagaacccaaggactacca
gcccagagaatgtcccatcccacaagagtctttccgcttgaatccactaa
attgaagaaaaatgccttgcagcctggatctttgggaggcattccccaac
tgtagcctctttccttggataactccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25167389_25168510
seq2: B6Ng01-189F05.b_42_1152

seq1  GAATTCATGGGAAACTTAGCCTCTCTTCAGTTCTTTCTACGGAGCCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGAAACTTAGCCTCTCTTCAGTTCTTTCTACGGAGCCTTGG  50

seq1  TGGTGAGCTTTGGGAGGAGAGAAGCCATGTTTCATGTGCTCACAGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCTTTGGGAGGAGAGAAGCCATGTTTCATGTGCTCACAGCTCTT  100

seq1  CTGCCCAGCAGCCACCTCATGCAGACCTTTGGAATAAATGATGAATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGCAGCCACCTCATGCAGACCTTTGGAATAAATGATGAATGAGT  150

seq1  GAAGGAACGAATGCTGGTGGTCAAGAACACTGCTCAGTGTCTGGCTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACGAATGCTGGTGGTCAAGAACACTGCTCAGTGTCTGGCTCCAG  200

seq1  CCCTTGGTGCCCATGTTTCCAGTGTGCTTCATCTCTCAGGGCCAGCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGCCCATGTTTCCAGTGTGCTTCATCTCTCAGGGCCAGCCTTC  250

seq1  TCTTAACGCTGCTGGCCATGGCATAAGCTTTCAAACCGCTTTTGTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACGCTGCTGGCCATGGCATAAGCTTTCAAACCGCTTTTGTTGAAA  300

seq1  GAGACTTTCTAATGGGGCTACCCATGAAACCGTTGTCCATTGAGCAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCTAATGGGGCTACCCATGAAACCGTTGTCCATTGAGCAGCTC  350

seq1  TGTGAGACTTCCTTTGAAACTCCATTGCATTTACCTCTGTCAGTGGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACTTCCTTTGAAACTCCATTGCATTTACCTCTGTCAGTGGAATA  400

seq1  GTCAGAGAAATAGTTTCTGCTTCACTTGGTGCCTGTTAAGAATGTGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAAATAGTTTCTGCTTCACTTGGTGCCTGTTAAGAATGTGGGCC  450

seq1  CAGGGTCTGTGTTGACCAGATTTCTGCTTCAGGCGTCTCAGCTAATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTGTGTTGACCAGATTTCTGCTTCAGGCGTCTCAGCTAATGACA  500

seq1  CAGGCTAAGGGGGCTAAGTCTTAGCATCTAAGTTCACTTCAGTTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAGGGGGCTAAGTCTTAGCATCTAAGTTCACTTCAGTTTTCTTT  550

seq1  GAGTAAAGAATTGGAACATTTCAGACTTTTCCCTTTCTTTGCCCTAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGAATTGGAACATTTCAGACTTTTCCCTTTCTTTGCCCTAACCA  600

seq1  CGGTGCCCATAGCCATGAAAATCAATTGTCAGCTCCTTAACGTGACGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCCCATAGCCATGAAAATCAATTGTCAGCTCCTTAACGTGACGCAA  650

seq1  ACTGGCAGCTATGGCTAGCGTTCCTTAGCAGACCGAAGAGACGAAACGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGCTATGGCTAGCGTTCCTTAGCAGACCGAAGAGACGAAACGTC  700

seq1  TCAAGGCATTTCTTTCTGTCTGTCAAATTCAGAGAAGCAGCCCTAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCATTTCTTTCTGTCTGTCAAATTCAGAGAAGCAGCCCTAACAGG  750

seq1  AAGTACAAGTGCACACTTACAGGCCATTTAATCTGTTCATTTATTTACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAGTGCACACTTACAGGCCATTTAATCTGTTCATTTATTTACTG  800

seq1  TGTGG-AAGGTTTTAGTTCCAGGCCTGACTTTTACAGAGACCATGTCTCA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGGTTTTAGTTCCAGGCCTGACTTTTACAGAGACCATGTCTCA  850

seq1  TTTTTACTTTGTAAGCAATAATAAAGAAAATGAGCTTTTCACTTCCTACA  899
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  TTTTTACTTTGT-AGCAATAATAAAG-AAATGAGCTTTTCACTTCCTACA  898

seq1  TGTATCTCCTGGGTTTGGTTTTAT-AAAATAACTTTTATTGCATTTTTAT  948
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  TGTATCTCCTGGG-TTGGTTTTATAAAAATAACTTTTATTGCATTTTTAT  947

seq1  TGTGGATATAATACATGTTTATTGTTTAAAAAATAGAAACTTCTCATCAG  998
      ||| ||||||||||||||||  |||| |||||||||||  | ||||||||
seq2  TGT-GATATAATACATGTTTTATGTTAAAAAAATAGAACTTCCTCATCAG  996

seq1  CAGTAGGAAGACAATAAAAAACACACATAATCCCATCACATAAGGAAACC  1048
      ||||||||  ||||| |||||||||||||   ||||||||||  ||||||
seq2  CAGTAGGAGAACAAT-AAAAACACACATA--TCCATCACATA--GAAACC  1041

seq1  ACAGTTAGCATTTGCTGTTATCTTCTTTTTAATATGCCTTGTGCCTTTTC  1098
      |||| ||||| ||||||||||| ||||||| ||||||| ||||| ||| |
seq2  ACAG-TAGCA-TTGCTGTTATC-TCTTTTT-ATATGCC-TGTGCTTTTCC  1086

seq1  TACTGTGAAAC-TCTGTGGTAGTCT  1122
      ||||||||||| |||||||||||||
seq2  TACTGTGAAACTTCTGTGGTAGTCT  1111

seq1: chr19_25294689_25295757
seq2: B6Ng01-189F05.g_64_1142 (reverse)

seq1  GCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCCACA  50
      |||||||||||| ||  |||||  ||| ||||||||| |||||||||  |
seq2  GCTGGAGTTATC-CAAGGAAAGAGGCTACAGTTGGGG-AATGCCTCCCAA  48

seq1  AGATCCA-GCTGCAAGGCATTTTTC-TCAA-TTAGTG--ATCAAGCGGGA  95
      ||||||| ||||||||||||||||| |||| ||||||   |||||| |||
seq2  AGATCCAGGCTGCAAGGCATTTTTCTTCAATTTAGTGGATTCAAGC-GGA  97

seq1  AAGGCTCCTTGTGGG-TGGGACCATCTCTGGGCTGGTAGT-CTTGGGTTC  143
      ||| || |||||||| ||||||  |||||||||||||||| |||||||||
seq2  AAGACT-CTTGTGGGATGGGACATTCTCTGGGCTGGTAGTCCTTGGGTTC  146

seq1  TATAAG-AGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAATAAGTAAC  192
      |||||| |||||||||||||||||||| ||| ||||||||||||||||||
seq2  TATAAGAAGAGCAGGCTGAGCAAGCCAAGGGGAGCAAGCCAATAAGTAAC  196

seq1  ATCCCT-CCATG-GCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAG  240
      |||||| ||||| |||||||||||||||||||||||||||||||||  ||
seq2  ATCCCTCCCATGAGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTGAAG  246

seq1  T-TCC-AGTCCTAACTTCCTTTGGTGATGAACAGCAGCATGG-AAGTGTA  287
      | ||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TATCCAAGTCCTAACTTCCTTTGGTGATGAACAGCAGCATGGAAAGTGTA  296

seq1  AGCTGAATAAATCCTTTCCTCCCC-AACTTGCTTCTTGGTCATGATGTTT  336
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCTGAATAAATCCTTTCCTCCCCAAACTTGCTTCTTGGTCATGATGTTT  346

seq1  GTGTAGGAATAGAAACCCTGACTAAGACACTAGTTAATCATTAATTAACT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGAATAGAAACCCTGACTAAGACACTAGTTAATCATTAATTAACT  396

seq1  AATTGCTGTAAAGCATATCATTCACGTGGTTTAATGTCTATTATTATTTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGTAAAGCATATCATTCACGTGGTTTAATGTCTATTATTATTTA  446

seq1  TAAAATTCTTCAAAATCACTCATCTGTGCTGCTGTGGTGGTCCTCTAATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTTCAAAATCACTCATCTGTGCTGCTGTGGTGGTCCTCTAATT  496

seq1  GTCAGGGCCAATGACTGGTAAGCTGTCAGTCAAAATTCTTGCATTTGCAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCCAATGACTGGTAAGCTGTCAGTCAAAATTCTTGCATTTGCAA  546

seq1  GCCAGAAAGTCAGCTGTCAGGATCTTAGGAGGAGAAGGGAGTCTGTGGAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGTCAGCTGTCAGGATCTTAGGAGGAGAAGGGAGTCTGTGGAA  596

seq1  ATCACTGGGGTTGCCCGTTGACCTGTAAGAGCTGGGCTGGAGGCCAGGGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGGGTTGCCCGTTGACCTGTAAGAGCTGGGCTGGAGGCCAGGGA  646

seq1  CTCTGTCACTACAGCTCCTCACTTCTCAGTCTTTGGGGCTTCTCCGTATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCACTACAGCTCCTCACTTCTCAGTCTTTGGGGCTTCTCCGTATA  696

seq1  TTGGAGGCCATACTGCCTACAGATATACATGTCAATCATGTGATTCTCAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCCATACTGCCTACAGATATACATGTCAATCATGTGATTCTCAC  746

seq1  CAAAGAGGGAGGACAGCCTTCAGTAGGGCTCAGATTGGATCACTGACTAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGGAGGACAGCCTTCAGTAGGGCTCAGATTGGATCACTGACTAA  796

seq1  AGAGCTGAGGACTATAGTCCTCCCTGGGTCAATTCTCCTCTTCTTTTGTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGGACTATAGTCCTCCCTGGGTCAATTCTCCTCTTCTTTTGTG  846

seq1  GAAAGAATATGACAGGAGAATTTGCTCAAAGAGAGGCAAGACCCACGGCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATATGACAGGAGAATTTGCTCAAAGAGAGGCAAGACCCACGGCA  896

seq1  TGGACTTGATACCACCAGCTCACTGCTTTTTTTTTTTTTTTTAAGTGTGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGATACCACCAGCTCACTGCTTTTTTTTTTTTTTTTAAGTGTGT  946

seq1  GTGTGTGTGTGTTTATGTGTGTTTATGTGTGCCTGCTAGTGCCTGTAGAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTATGTGTGTTTATGTGTGCCTGCTAGTGCCTGTAGAA  996

seq1  CCCCAAAAAGGGTATTAGATGTCCTGGACCTGGTGTTGCATGTGGTTTTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAAGGGTATTAGATGTCCTGGACCTGGTGTTGCATGTGGTTTTC  1046

seq1  AGCTGTCTGACATGGATGCTGGGATCTGAATTC  1069
      |||||||||||||||||||||||||||||||||
seq2  AGCTGTCTGACATGGATGCTGGGATCTGAATTC  1079