BAC Information

Click to search

BAC

Clone NameB6Ng01-189H22
Chromosome19 (Build37)
Map Location 44,263,661 - 44,386,925
singlet/doubletdoublet
Overlap genePkd2l1, Scd3, LOC629152, Scd2
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2
Downstream geneScd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H22.bB6Ng01-189H22.g
ACCGA013503GA013504
length1,178967
definitionB6Ng01-189H22.b B6Ng01-189H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,263,661 - 44,264,823)(44,385,958 - 44,386,925)
sequence
gaattcagtcagatctgtgagtgctaccaagtcgtaacatgcctgcttac
aatagaagcaatgatgtcacagggcactgtgccagtcagatgccccttgg
tatacttcttccagtaaaaagcataaatccgatcggggctgagataagca
actgtgtggcaagtactctgaaactgttgtcacagcatgtcaggctgagc
aaatgacccatataatggccacatagccctgttggatcaggtaggtacag
aatgagaaaactgacattcaaagaagttatgaaaaaagtacaaggtcccc
caggtggaaaatgacagggtgaagtgtttgaacataaatctgcaaactca
gagcccagacttcagtctctacataaagccacccttggtcactatgtggc
agtggcccctttcaagagacaaaaaagaaattcccgaggttggagagcag
gctgcctaagagcaaagatgaccactgcacattcatccattccaacactt
ggaggctttgactatggagagtgacacagacatatatagcacaaaagaag
aagggtctggaagcgatgttagctcttggagcagaaagccgcatacgtgc
ctcctatccagtgtccagccgagacggggcctccacacatgggagaaagt
atggctcccacagcgaaattgacttcctgtgagacaacaaaatccttctg
ggtatccatccccagggctgggctggtgggatagcagaccaaaccccatg
ggaggtgccatgatgaagtgactctgaatcatctatatccttgacctgca
ccaccatctatctaaatcatcctctaggagtctctgatagtcagtgatcc
tggaccaggatgcaaaactcaagccagtcccagccctgatcagagcagtt
gagcccacaggaattacaataccaggcagcccaaggttcaagcttccaca
cactcttccccattaccagggagtccagaatggacaacagtgacccaact
ctgggagaagttgggaaaactgctaaccttgctttcaagcttaagttagc
tgatggcagctacttgcacagaaagggctttgtttcttgagcttgctgtt
ggtgacacgatgttcagatggaaggatggtctgaccctgacagcctgttg
accacagtaatattcggaccaaaccagt
gaattcttaccctcaccctccacttctaaagaaaaagaaaaaagaaaaaa
agaaatcgtaagaatacagccaggcgtggttctgggcctgccatgccttt
gacaaccagttttctctcgtttgctgttcttgttcacaaagtctttcaag
gcctgaccctgactactcattgttctcagtggaaaatggccaagatgcca
atggactcttggatgtccccagcaccaaaatcaccatgagtcagcacagc
acacactgcccttttgtgagctctctgctgttccccgggcagatagcgtg
ggaggagtgctcaccagaggaggagggctctttctgcctccagcaacttc
agggcagaatctctgtcccttagggagtttatctttgggatttatggcgt
gtgctcagaattcattgtccaaaactcagtgctttctttgttgcatagaa
cattaagcacaggtcaccgaagagaacgcccacttcccgtgacatttgcc
actgagcgccactattgaagtgcagggagacatttgcaattaatggaagc
tgcccttagttataatagtgctcagtcctttacaggcagccagactgtag
ttgcgaggagagaaaatgccagcactatttatgtggtctgagaggtgggt
gtaaaactggggtgtggtaggtcacagcaagaatgggagctggatagatt
gtttggttccagaacacagtaagctcatgcagggagagggtgcctggatt
ctgtggagcctgactgcagtatcgccacaccactcctgctgcctctaaat
gaactcagctaccactctgaggcgctcccatctcttgcttctgatgtgag
atgagacatcctccagcctttagcttagtgcctgaccagagaatgatcct
ggcattatcactgatgtgttataaaaagataaggagtataggatgtgttc
tatgggggggtgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44263661_44264823
seq2: B6Ng01-189H22.b_46_1223

seq1  GAATTCAGTCAGATCTGTGAGTGCTACCAAGTCGTAACATGCCTGCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGATCTGTGAGTGCTACCAAGTCGTAACATGCCTGCTTAC  50

seq1  AATAGAAGCAATGATGTCACAGGGCACTGTGCCAGTCAGATGCCCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGCAATGATGTCACAGGGCACTGTGCCAGTCAGATGCCCCTTGG  100

seq1  TATACTTCTTCCAGTAAAAAGCATAAATCCGATCGGGGCTGAGATAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCTTCCAGTAAAAAGCATAAATCCGATCGGGGCTGAGATAAGCA  150

seq1  ACTGTGTGGCAAGTACTCTGAAACTGTTGTCACAGCATGTCAGGCTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGGCAAGTACTCTGAAACTGTTGTCACAGCATGTCAGGCTGAGC  200

seq1  AAATGACCCATATAATGGCCACATAGCCCTGTTGGATCAGGTAGGTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCCATATAATGGCCACATAGCCCTGTTGGATCAGGTAGGTACAG  250

seq1  AATGAGAAAACTGACATTCAAAGAAGTTATGAAAAAAGTACAAGGTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAACTGACATTCAAAGAAGTTATGAAAAAAGTACAAGGTCCCC  300

seq1  CAGGTGGAAAATGACAGGGTGAAGTGTTTGAACATAAATCTGCAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGAAAATGACAGGGTGAAGTGTTTGAACATAAATCTGCAAACTCA  350

seq1  GAGCCCAGACTTCAGTCTCTACATAAAGCCACCCTTGGTCACTATGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGACTTCAGTCTCTACATAAAGCCACCCTTGGTCACTATGTGGC  400

seq1  AGTGGCCCCTTTCAAGAGACAAAAAAGAAATTCCCGAGGTTGGAGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCCTTTCAAGAGACAAAAAAGAAATTCCCGAGGTTGGAGAGCAG  450

seq1  GCTGCCTAAGAGCAAAGATGACCACTGCACATTCATCCATTCCAACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAAGAGCAAAGATGACCACTGCACATTCATCCATTCCAACACTT  500

seq1  GGAGGCTTTGACTATGGAGAGTGACACAGACATATATAGCACAAAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTTGACTATGGAGAGTGACACAGACATATATAGCACAAAAGAAG  550

seq1  AAGGGTCTGGAAGCGATGTTAGCTCTTGGAGCAGAAAGCCGCATACGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTGGAAGCGATGTTAGCTCTTGGAGCAGAAAGCCGCATACGTGC  600

seq1  CTCCTATCCAGTGTCCAGCCGAGACGGGGCCTCCACACATGGGAGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCCAGTGTCCAGCCGAGACGGGGCCTCCACACATGGGAGAAAGT  650

seq1  ATGGCTCCCACAGCGAAATTGACTTCCTGTGAGACAACAAAATCCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCCACAGCGAAATTGACTTCCTGTGAGACAACAAAATCCTTCTG  700

seq1  GGTATCCATCCCCAGGGCTGGGCTGGTGGGATAGCAGACCAAACCCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCATCCCCAGGGCTGGGCTGGTGGGATAGCAGACCAAACCCCATG  750

seq1  GGAGGTGCCATGATGAAGTGACTCTGAATCATCTATATCCTTGACCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCCATGATGAAGTGACTCTGAATCATCTATATCCTTGACCTGCA  800

seq1  CCACCATCTATCTAAATCATCCTCTAGGAGTCTCTGATAGTCAGTGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTATCTAAATCATCCTCTAGGAGTCTCTGATAGTCAGTGATCC  850

seq1  TGGACCAGGATGC-AAACTCAAGCCAGTCCCAGCCCTGATCAGAGCAG-T  898
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TGGACCAGGATGCAAAACTCAAGCCAGTCCCAGCCCTGATCAGAGCAGTT  900

seq1  GAGCCCACAAGAATTACAAATACCAGGCAG-CCAAGGTTCAAGCTTCCAC  947
      ||||||||| ||||||| |||||||||||| |||||||||||||||||||
seq2  GAGCCCACAGGAATTAC-AATACCAGGCAGCCCAAGGTTCAAGCTTCCAC  949

seq1  ACACTC-TCCCCA-TACCA-GGAGTCCAGAATGGACAACAGTGA-CCAAC  993
      |||||| |||||| ||||| |||||||||||||||||||||||| |||||
seq2  ACACTCTTCCCCATTACCAGGGAGTCCAGAATGGACAACAGTGACCCAAC  999

seq1  TCT-GGAG-AGTT-GGAAAACTGCTAACCCTGCTTCAAAGCTT-AGGTAG  1039
      ||| |||| |||| ||||||||||||||| |||||  |||||| || |||
seq2  TCTGGGAGAAGTTGGGAAAACTGCTAACCTTGCTTTCAAGCTTAAGTTAG  1049

seq1  CTGAATGGCAGCTACTTGCACAGAAA-GGCTTTGTTTC-TGAGCTTTGGC  1087
      ||| |||||||||||||||||||||| ||||||||||| |||||||  ||
seq2  CTG-ATGGCAGCTACTTGCACAGAAAGGGCTTTGTTTCTTGAGCTT--GC  1096

seq1  TGTT-GTGACAGGGTGTCAGGATTGGAGGAGTGTTCTG-CCCTGACAG-C  1134
      |||| |||||| | |||   ||| | |||| || |||| ||||||||| |
seq2  TGTTGGTGACACGATGTTCAGATGGAAGGA-TGGTCTGACCCTGACAGCC  1145

seq1  TGGTGACCACAG--AAAATCG--ACAAACCAGT  1163
      || |||||||||  | | |||   |||||||||
seq2  TGTTGACCACAGTAATATTCGGACCAAACCAGT  1178

seq1: chr19_44385958_44386925
seq2: B6Ng01-189H22.g_64_1030 (reverse)

seq1  CACCACA--CCCCCATAGAACACATCCTATACCTCCTTATCTTTTTATAA  48
      |||||||  |||||||||||||||||||||| |||||||||||||||| |
seq2  CACCACACCCCCCCATAGAACACATCCTATA-CTCCTTATCTTTTTAT-A  48

seq1  ACACATCAGTGATAATGCCAGGATCATTTCTCTGGTCAGGCACTAAGCTA  98
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACATCAGTGATAATGCCAGGATCA-TTCTCTGGTCAGGCACTAAGCTA  97

seq1  AAGGCTGGAGGATGTCTCATCTCACATCAGAAGCAAGAGATGGGAGCGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGAGGATGTCTCATCTCACATCAGAAGCAAGAGATGGGAGCGCC  147

seq1  TCAGAGTGGTAGCTGAGTTCATTTAGAGGCAGCAGGAGTGGTGTGGCGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGGTAGCTGAGTTCATTTAGAGGCAGCAGGAGTGGTGTGGCGAT  197

seq1  ACTGCAGTCAGGCTCCACAGAATCCAGGCACCCTCTCCCTGCATGAGCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTCAGGCTCCACAGAATCCAGGCACCCTCTCCCTGCATGAGCTT  247

seq1  ACTGTGTTCTGGAACCAAACAATCTATCCAGCTCCCATTCTTGCTGTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCTGGAACCAAACAATCTATCCAGCTCCCATTCTTGCTGTGAC  297

seq1  CTACCACACCCCAGTTTTACACCCACCTCTCAGACCACATAAATAGTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACACCCCAGTTTTACACCCACCTCTCAGACCACATAAATAGTGCT  347

seq1  GGCATTTTCTCTCCTCGCAACTACAGTCTGGCTGCCTGTAAAGGACTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCTCTCCTCGCAACTACAGTCTGGCTGCCTGTAAAGGACTGAG  397

seq1  CACTATTATAACTAAGGGCAGCTTCCATTAATTGCAAATGTCTCCCTGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTATAACTAAGGGCAGCTTCCATTAATTGCAAATGTCTCCCTGCA  447

seq1  CTTCAATAGTGGCGCTCAGTGGCAAATGTCACGGGAAGTGGGCGTTCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATAGTGGCGCTCAGTGGCAAATGTCACGGGAAGTGGGCGTTCTCT  497

seq1  TCGGTGACCTGTGCTTAATGTTCTATGCAACAAAGAAAGCACTGAGTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGACCTGTGCTTAATGTTCTATGCAACAAAGAAAGCACTGAGTTTT  547

seq1  GGACAATGAATTCTGAGCACACGCCATAAATCCCAAAGATAAACTCCCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATGAATTCTGAGCACACGCCATAAATCCCAAAGATAAACTCCCTA  597

seq1  AGGGACAGAGATTCTGCCCTGAAGTTGCTGGAGGCAGAAAGAGCCCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGAGATTCTGCCCTGAAGTTGCTGGAGGCAGAAAGAGCCCTCCT  647

seq1  CCTCTGGTGAGCACTCCTCCCACGCTATCTGCCCGGGGAACAGCAGAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTGAGCACTCCTCCCACGCTATCTGCCCGGGGAACAGCAGAGAG  697

seq1  CTCACAAAAGGGCAGTGTGTGCTGTGCTGACTCATGGTGATTTTGGTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAAGGGCAGTGTGTGCTGTGCTGACTCATGGTGATTTTGGTGCT  747

seq1  GGGGACATCCAAGAGTCCATTGGCATCTTGGCCATTTTCCACTGAGAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATCCAAGAGTCCATTGGCATCTTGGCCATTTTCCACTGAGAACA  797

seq1  ATGAGTAGTCAGGGTCAGGCCTTGAAAGACTTTGTGAACAAGAACAGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGTCAGGGTCAGGCCTTGAAAGACTTTGTGAACAAGAACAGCAA  847

seq1  ACGAGAGAAAACTGGTTGTCAAAGGCATGGCAGGCCCAGAACCACGCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAAAACTGGTTGTCAAAGGCATGGCAGGCCCAGAACCACGCCTG  897

seq1  GCTGTATTCTTACGATTTCTTTTTTTCTTTTTTCTTTTTCTTTAGAAGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTCTTACGATTTCTTTTTTTCTTTTTTCTTTTTCTTTAGAAGTG  947

seq1  GAGGGTGAGGGTAAGAATTC  968
      ||||||||||||||||||||
seq2  GAGGGTGAGGGTAAGAATTC  967