BAC Information

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BAC

Clone NameB6Ng01-192C03
Chromosome19 (Build37)
Map Location 15,776,712 - 15,872,806
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192C03.bB6Ng01-192C03.g
ACCGA015446GA015447
length1,158871
definitionB6Ng01-192C03.b B6Ng01-192C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,776,712 - 15,777,844)(15,871,938 - 15,872,806)
sequence
actcccaaaaccttggaagttggggcttctcaggttacaacaaaccattt
ttagaggataccatatatcgtaattattgcactgatgtacattatccaaa
taactaattgaatattggttgtcaagatattgatgaaacagcctcttaat
gttgagcaaaagaaatatgatgtacctatcaatatatcaacaccttatca
aatatgagtgctctgtgataagtgtattcaagttgctcttcccaagatgc
tgcaagaacaattctctcaagctcctttttgtcatattttttgaaacatc
gagtagttcagacgaaataaggacatcagtgatcttcatctttcaagttt
gtactttgctaacatgagtgatagttgagataaatcttattcttaccctg
aattatcaaatgagccatggttatgtcctcctctgtgaaggcaaaggacc
cttcattttacctggcattaacttcttccagcctgacttagattctccct
gttctgcttttctccattactctagtgacaaatatattggcatcctttct
gctgccccaggatctttgcactgctattcccacagcctcaaagtttcccc
tgccaagtccctgcaaagcatgcttctctcctatctagtttctgtccagt
gtttctccatctgtaagacacccttgacagtctacttaaaacaccaacca
tgccaccactatcaacatctgtatcccacttctctaattgacttgtttct
ttaatagtcattattgacttagacacaatgcatcttaagtagatacattt
ggttttatgttcccataactatgatgtaagctatacagaattaggtactt
ggtactttgtttttcacaactttatctgaaacattgtacagtacctttca
tgggtgctcaaaacacacaaaaatgcatgaacagatcttatatcacacag
atgcctgtgaacataatttagcaggtttatacttggtgtgctctgaataa
tggattcaaatgcttttgagctgatcgggagaagaaaacgtgagactaag
gcagatgggatagagaggctaatgatggcacccagaaaactcctcagatg
gttgccatgaagaactcagcacctgttaaactttattgtattcaccctct
taccataa

gaattcctggtgtctaggctatttactcatttttaattattggggtaaga
catttctgtccttgttggccaatttaagtgaagggaggaaagagcagaag
gaacgctgtttggccgtgacaatttgttctattttccttggaaatttctg
gaactcagaggtaggtatgagataaggcgctagatggggattttcctgtt
aagtgtgagaaaaagtggacccattcccttgcctccttttgcaaagtgct
tgatgagaaaattgagccccaagctcctagagaccctcaaggcagtcttg
gccccgagagtgggtgacaggaatagaatccagacttgttgtgatttaca
gggccaggctcctcctggagatcctcagggacttgccagaggtttcggct
ggtctgttctgaaacccaaggatgtatgctacaccagattggggctgtgt
ccagtagggagggaggttggaaaaagcagaaggtttcaagggtctttggg
attgccaatattctgagctgaaatatcccagggtgaacttcaggcatctg
ctcatgaaagatccttttgtccaatgtccaggatgtaaaataataaactc
ccaggtgggggagggcagattgagctgagcaactttcacaaagcatgaga
cagcatcgcaactccacaccgttttgttttacattttccaggacccgctt
tgcttcactcctcattttgttccctgtcttttggtttgggtggagtgaag
aggatcagcgaaggggatcagctttcttctactcaccctcctccaatttc
tctcaccccacctccttcctgctctgcttggctcaagaagaggagggaaa
gggggtgtggatagtgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15776712_15777844
seq2: B6Ng01-192C03.b_23_1158

seq1  GGGC-TCTCAGGTTACAACAAACAA---CAATGGGATACCATATATCGTA  46
      |||| |||||||||||||||||| |     |  |||||||||||||||||
seq2  GGGCTTCTCAGGTTACAACAAACCATTTTTAGAGGATACCATATATCGTA  50

seq1  ATTATTGCACTGATGTACATTATCCAAATAACTAATTGAATATTGGTTGT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCACTGATGTACATTATCCAAATAACTAATTGAATATTGGTTGT  100

seq1  CAAGATATTGATGAAACAGCCTCTTAATGTTGAGCAAAAGAAATATGATG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTGATGAAACAGCCTCTTAATGTTGAGCAAAAGAAATATGATG  150

seq1  TACCTATCAATATATCAACACCTTATCAAATATGAGTGCTCTGTGATAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCAATATATCAACACCTTATCAAATATGAGTGCTCTGTGATAAG  200

seq1  TGTATTCAAGTTGCTCTTCCCAAGATGCTGCAAGAACAATTCTCTCAAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAAGTTGCTCTTCCCAAGATGCTGCAAGAACAATTCTCTCAAGC  250

seq1  TCCTTTTTGTCATATTTTTTGAAACATCGAGTAGTTCAGACGAAATAAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGTCATATTTTTTGAAACATCGAGTAGTTCAGACGAAATAAGG  300

seq1  ACATCAGTGATCTTCATCTTTCAAGTTTGTACTTTGCTAACATGAGTGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGATCTTCATCTTTCAAGTTTGTACTTTGCTAACATGAGTGAT  350

seq1  AGTTGAGATAAATCTTATTCTTACCCTGAATTATCAAATGAGCCATGGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGATAAATCTTATTCTTACCCTGAATTATCAAATGAGCCATGGTT  400

seq1  ATGTCCTCCTCTGTGAAGGCAAAGGACCCTTCATTTTACCTGGCATTAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCCTCTGTGAAGGCAAAGGACCCTTCATTTTACCTGGCATTAAC  450

seq1  TTCTTCCAGCCTGACTTAGATTCTCCCTGTTCTGCTTTTCTCCATTACTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAGCCTGACTTAGATTCTCCCTGTTCTGCTTTTCTCCATTACTC  500

seq1  TAGTGACAAATATATTGGCATCCTTTCTGCTGCCCCAGGATCTTTGCACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAAATATATTGGCATCCTTTCTGCTGCCCCAGGATCTTTGCACT  550

seq1  GCTATTCCCACAGCCTCAAAGTTTCCCCTGCCAAGTCCCTGCAAAGCATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCCACAGCCTCAAAGTTTCCCCTGCCAAGTCCCTGCAAAGCATG  600

seq1  CTTCTCTCCTATCTAGTTTCTGTCCAGTGTTTCTCCATCTGTAAGACACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTATCTAGTTTCTGTCCAGTGTTTCTCCATCTGTAAGACACC  650

seq1  CTTGACAGTCTACTTAAAACACCAACCATGCCACCACTATCAACATCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGTCTACTTAAAACACCAACCATGCCACCACTATCAACATCTGT  700

seq1  ATCCCACTTCTCTAATTGACTTGTTTCTTTAATAGTCATTATTGACTTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACTTCTCTAATTGACTTGTTTCTTTAATAGTCATTATTGACTTAG  750

seq1  ACACAATGCATCTTAAGTAGATACATTTGGTTTTATGTTCCCATAACTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCATCTTAAGTAGATACATTTGGTTTTATGTTCCCATAACTAT  800

seq1  GATGTAAGCTATACAGAATTAGGTACTTGGTACTTTGTTTTTCACAACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGCTATACAGAATTAGGTACTTGGTACTTTGTTTTTCACAACTT  850

seq1  TATCTGAAACATTGTACAGTACCTTTCATGGGTGCTCAAAACACACAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAACATTGTACAGTACCTTTCATGGGTGCTCAAAACACACAAAA  900

seq1  ATGCATGAACAGATCTTATATCACACAGATGCCTGTGAACATAATTTAGG  946
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCATGAACAGATCTTATATCACACAGATGCCTGTGAACATAATTTA-G  949

seq1  CAGGTTTATACTTGGTGTGCTCTGAATAATGGATTCAAATGCTTTTGAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CAGGTTTATACTTGGTGTGCTCTGAATAATGGATTCAAATGCTTTTGA--  997

seq1  GCTGATCGGGAGAAGAAAACGTGAGACTAAGGCAAGATGGGATAGAGAGG  1046
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGATCGGGAGAAGAAAACGTGAGACTAAGGC-AGATGGGATAGAGAGG  1046

seq1  CTAATGATGGCAACCCAGAAAACT-CTCAGATGGTTGCCATGAAGAACTC  1095
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  CTAATGATGGC-ACCCAGAAAACTCCTCAGATGGTTGCCATGAAGAACTC  1095

seq1  AGCA-CTGTTAAACTTTA-TGTA-TCA-CCTCTTACACATAA  1133
      |||| ||||||||||||| |||| ||| |||||||| |||||
seq2  AGCACCTGTTAAACTTTATTGTATTCACCCTCTTAC-CATAA  1136


seq1: chr19_15871938_15872806
seq2: B6Ng01-192C03.g_65_935 (reverse)

seq1  ACCCCCACT-TCCACACCCCCTTT-CCTCCTCTTCTTGAGCCAAGCAGAG  48
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  ACCCCCACTATCCACACCCCCTTTCCCTCCTCTTCTTGAGCCAAGCAGAG  50

seq1  CAGG-AGGAGGTGGGGTGAGAG-AATTGGAGGAGGGTGAGTAGAAGAAAG  96
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGAAGGAGGTGGGGTGAGAGAAATTGGAGGAGGGTGAGTAGAAGAAAG  100

seq1  CTGATCCCCTTCGCTGATCCTCTTCACTCCACCCAAACCAAAAGACAGGG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCCTTCGCTGATCCTCTTCACTCCACCCAAACCAAAAGACAGGG  150

seq1  AACAAAATGAGGAGTGAAGCAAAGCGGGTCCTGGAAAATGTAAAACAAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGAGGAGTGAAGCAAAGCGGGTCCTGGAAAATGTAAAACAAAA  200

seq1  CGGTGTGGAGTTGCGATGCTGTCTCATGCTTTGTGAAAGTTGCTCAGCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGGAGTTGCGATGCTGTCTCATGCTTTGTGAAAGTTGCTCAGCTC  250

seq1  AATCTGCCCTCCCCCACCTGGGAGTTTATTATTTTACATCCTGGACATTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCCTCCCCCACCTGGGAGTTTATTATTTTACATCCTGGACATTG  300

seq1  GACAAAAGGATCTTTCATGAGCAGATGCCTGAAGTTCACCCTGGGATATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGGATCTTTCATGAGCAGATGCCTGAAGTTCACCCTGGGATATT  350

seq1  TCAGCTCAGAATATTGGCAATCCCAAAGACCCTTGAAACCTTCTGCTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCAGAATATTGGCAATCCCAAAGACCCTTGAAACCTTCTGCTTTT  400

seq1  TCCAACCTCCCTCCCTACTGGACACAGCCCCAATCTGGTGTAGCATACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTCCCTCCCTACTGGACACAGCCCCAATCTGGTGTAGCATACAT  450

seq1  CCTTGGGTTTCAGAACAGACCAGCCGAAACCTCTGGCAAGTCCCTGAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTTTCAGAACAGACCAGCCGAAACCTCTGGCAAGTCCCTGAGGA  500

seq1  TCTCCAGGAGGAGCCTGGCCCTGTAAATCACAACAAGTCTGGATTCTATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGAGGAGCCTGGCCCTGTAAATCACAACAAGTCTGGATTCTATT  550

seq1  CCTGTCACCCACTCTCGGGGCCAAGACTGCCTTGAGGGTCTCTAGGAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCCACTCTCGGGGCCAAGACTGCCTTGAGGGTCTCTAGGAGCT  600

seq1  TGGGGCTCAATTTTCTCATCAAGCACTTTGCAAAAGGAGGCAAGGGAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCAATTTTCTCATCAAGCACTTTGCAAAAGGAGGCAAGGGAATG  650

seq1  GGTCCACTTTTTCTCACACTTAACAGGAAAATCCCCATCTAGCGCCTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACTTTTTCTCACACTTAACAGGAAAATCCCCATCTAGCGCCTTAT  700

seq1  CTCATACCTACCTCTGAGTTCCAGAAATTTCCAAGGAAAATAGAACAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACCTACCTCTGAGTTCCAGAAATTTCCAAGGAAAATAGAACAAAT  750

seq1  TGTCACGGCCAAACAGCGTTCCTTCTGCTCTTTCCTCCCTTCACTTAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGGCCAAACAGCGTTCCTTCTGCTCTTTCCTCCCTTCACTTAAAT  800

seq1  TGGCCAACAAGGACAGAAATGTCTTACCCCAATAATTAAAAATGAGTAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACAAGGACAGAAATGTCTTACCCCAATAATTAAAAATGAGTAAA  850

seq1  TAGCACTGAGACACCAGGAATTC  869
      |||| || |||||||||||||||
seq2  TAGC-CT-AGACACCAGGAATTC  871


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