BAC Information

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BAC

Clone NameB6Ng01-192I09
Chromosome19 (Build37)
Map Location 29,609,056 - 29,737,663
singlet/doubletdoublet
Overlap geneC030046E11Rik, D19Wsu12e
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Downstream geneMlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192I09.bB6Ng01-192I09.g
ACCGA015742GA015743
length1,1581,135
definitionB6Ng01-192I09.b B6Ng01-192I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,736,499 - 29,737,663)(29,609,056 - 29,610,117)
sequence
gaattctacccattccctccctccgtctggaacttccctcaggcagcagt
ggtcagatggctgcaggcccatggagatgagatggcctggcgggtcaagg
ctcttgctaccaagtctgatgacctgagtttgcttcccagaagccgaagg
agagaatcatttcccacaagccatccctctgaccatcacagctttgttgt
ggtccacatgcaaccacacacatcataggcatacaataaatcggtaaatc
tttcaaaataaatggcctgttttaaagaggccaggacagaccccattgct
tgctctgaggggaacatcaaagagagccagactgagttgtttcctctctc
tgtgaaggaacacacttgcgagaagagagctgagagaagctgaggtgact
ctgcagtcctgaagagatcaaccaatcgattgatcagggatttgttccat
gagagaaaagattgcttcgctgaaataagctcttctcccatttccttgct
tgcttctatctttctcctaacccccaagcttaaaaaaattcctttcaaag
agcacagataattgttggattctcttaggaccgcttataggtcagggaca
tgaggagtataaaaataaacaatgagttttaaagatatttttaggaccac
aaaaactaaagaacccccgaacatcgattgacaagaacagaaataccaag
tttcaggttctaggtcaagtcttaatgtcaaagaccctgtactgtgccaa
gggagggacaaaaacaggcaaggacagcccttgttcctgttggcaggaag
ccatcagtgggggcaggacacttcttgggctctggagaaaatcaaaaggc
tggcatgtccaaagaagccctaacttgtgaaaagctatccaaagactatt
gatggtttgctctgtagcagatgctatctctgggaagagctgggttgaca
ctagaaatctattttatgtacgtgtatggctttctgaaagacagatggag
tttgacatccatctgtaaacgagagaaaaagggaaagtgctgcagttctt
gtgccaagcctctttcaggcgtgctcagctgatgccagacttttcatctc
aacagtctctcaaggtggacagttagaattttctcagaagtgcattggga
tctctcag
gaattcactctaaaactgtaaacaggccccatctagaaaactgatgcatt
gtaatttcagtgacaaactaacaaaattgtttgaatcatatgtagtgtca
gactgcttttaatagttacaatactttcagaagtcagaaaagaaaatttg
tatcccatatggaattatcaggaaattaattatcaggaaatatcacaatt
caaatagcattcttacaaccttgatacaaatgcaaagaaaagtttttgta
aaaaaattttttttagttgtgcataagagaaacttctaagcttctactgt
ttcttggatcatacatctataatcccagcacttgggaggctaaagctcaa
ctgttgcaagttcaaaataagcctgggctacatagcagggtccagtccag
ccagggctacatacttagcaagagctagactgtgtgtggtgcggggagct
catatgaaaagagtttttagatgtgatatatgtaaattctcattactggc
aagcattgataaagctttgcattcagtttgatcactaggaataatagctt
taaatcctaattaaccaacagactgtgacaattataaaacttaaaaaaaa
ttcttcctctgttttgatcatggtttttaattttctgtaatttggaaact
ctgacatcttgggtctttgttttcacaggaaaaattgcctttaactctgt
ttatctgagagccaagtaccagagtccagtgatattattcaaggtagcca
atactaagcttctttgctttgctccacccatttcttcccatgtgatttgg
gctttttattgctgtgataaaacaccataaccaaaagggagaggaaaggg
tttgttttagctttactatcctcaggtcacacttgatcaccaagggaaag
ctgactcagggctgaaaacaggagccatggaggggtgctgctcgctggct
tcctcctatgacttgctcagtctgctttcctaaagcagccaggatcaacc
ttgccaggtggatagcactgccttcattgagtcgtcccaccattaccact
aattcagaagattatgctatgaacttagctaagcttcagactaactggag
atttttttttttttctccaattgaacagtctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29736499_29737663
seq2: B6Ng01-192I09.b_41_1198 (reverse)

seq1  CTGAGAGA-CCCAATTCAACCTTTCTGAG-AAATCTTCACTGTCCACCTT  48
      |||||||| |||||| ||    ||||||| ||||  | ||||||||||||
seq2  CTGAGAGATCCCAATGCA---CTTCTGAGAAAATTCTAACTGTCCACCTT  47

seq1  GAGAGACTTGTTGAGATGAAAAGTCTTGGCATCAGCCTGGAGGCACGCCC  98
      ||||||| ||||||||||||||||| ||||||||| |||   ||||||| 
seq2  GAGAGAC-TGTTGAGATGAAAAGTC-TGGCATCAG-CTG--AGCACGCCT  92

seq1  TGAAGAGGCTTGGGCACAGAACCTGCAGCACTTTCCC-TTTTCTCTCGTT  147
        ||||||||| ||||||  | ||||||||||||||| ||||||||||||
seq2  GAAAGAGGCTT-GGCACAAGAACTGCAGCACTTTCCCTTTTTCTCTCGTT  141

seq1  TACAGATGGATTGTTCAACTCCATCTGTCTTTCAGAAAGCCATAACACGT  197
      |||||||||| |||  ||||||||||||||||||||||||||| ||||||
seq2  TACAGATGGA-TGTCAAACTCCATCTGTCTTTCAGAAAGCCAT-ACACGT  189

seq1  ACAT-AAATAGATTTCTAGTGTCAACCCAGCTCTT-CCAGAGATAGCATC  245
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACATAAAATAGATTTCTAGTGTCAACCCAGCTCTTCCCAGAGATAGCATC  239

seq1  TGCTACAGAGCAAACCATCAATAGTCTTTTGGATAGCTTTTCACAAGTTA  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCTACAGAGCAAACCATCAATAGTC-TTTGGATAGCTTTTCACAAGTTA  288

seq1  GGGCTTCTTTGGACATGCCAGCCTTTTGATTTTCTCCAGAGCCCAAGAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTTTGGACATGCCAGCCTTTTGATTTTCTCCAGAGCCCAAGAAG  338

seq1  TGTCCTGCCCCCACTGATGGCTTCCTGCCAACAGGAACAAGGGCTGTCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCCCCACTGATGGCTTCCTGCCAACAGGAACAAGGGCTGTCCT  388

seq1  TGCCTGTTTTTGTCCCTCCCTTGGCACAGTACAGGGTCTTTGACATTAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTTTTGTCCCTCCCTTGGCACAGTACAGGGTCTTTGACATTAAG  438

seq1  ACTTGACCTAGAACCTGAAACTTGGTATTTCTGTTCTTGTCAATCGATGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCTAGAACCTGAAACTTGGTATTTCTGTTCTTGTCAATCGATGT  488

seq1  TCGGGGGTTCTTTAGTTTTTGTGGTCCTAAAAATATCTTTAAAACTCATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGGTTCTTTAGTTTTTGTGGTCCTAAAAATATCTTTAAAACTCATT  538

seq1  GTTTATTTTTATACTCCTCATGTCCCTGACCTATAAGCGGTCCTAAGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTTATACTCCTCATGTCCCTGACCTATAAGCGGTCCTAAGAGA  588

seq1  ATCCAACAATTATCTGTGCTCTTTGAAAGGAATTTTTTTAAGCTTGGGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAATTATCTGTGCTCTTTGAAAGGAATTTTTTTAAGCTTGGGGG  638

seq1  TTAGGAGAAAGATAGAAGCAAGCAAGGAAATGGGAGAAGAGCTTATTTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAAAGATAGAAGCAAGCAAGGAAATGGGAGAAGAGCTTATTTCA  688

seq1  GCGAAGCAATCTTTTCTCTCATGGAACAAATCCCTGATCAATCGATTGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGCAATCTTTTCTCTCATGGAACAAATCCCTGATCAATCGATTGGT  738

seq1  TGATCTCTTCAGGACTGCAGAGTCACCTCAGCTTCTCTCAGCTCTCTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTCAGGACTGCAGAGTCACCTCAGCTTCTCTCAGCTCTCTTCT  788

seq1  CGCAAGTGTGTTCCTTCACAGAGAGAGGAAACAACTCAGTCTGGCTCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGTGTGTTCCTTCACAGAGAGAGGAAACAACTCAGTCTGGCTCTCT  838

seq1  TTGATGTTCCCCTCAGAGCAAGCAATGGGGTCTGTCCTGGCCTCTTTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTCCCCTCAGAGCAAGCAATGGGGTCTGTCCTGGCCTCTTTAAA  888

seq1  ACAGGCCATTTATTTTGAAAGATTTACCGATTTATTGTATGCCTATGATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCATTTATTTTGAAAGATTTACCGATTTATTGTATGCCTATGATG  938

seq1  TGTGTGGTTGCATGTGGACCACAACAAAGCTGTGATGGTCAGAGGGATGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTGCATGTGGACCACAACAAAGCTGTGATGGTCAGAGGGATGG  988

seq1  CTTGTGGGAAATGATTCTCTCCTTCGGCTTCTGGGAAGCAAACTCAGGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGAAATGATTCTCTCCTTCGGCTTCTGGGAAGCAAACTCAGGTC  1038

seq1  ATCAGACTTGGTAGCAAGAGCCTTGACCCGCCAGGCCATCTCATCTCCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTTGGTAGCAAGAGCCTTGACCCGCCAGGCCATCTCATCTCCAT  1088

seq1  GGGCCTGCAGCCATCTGACCACTGCTGCCTGAGGGAAGTTCCAGACGGAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCAGCCATCTGACCACTGCTGCCTGAGGGAAGTTCCAGACGGAG  1138

seq1  GGAGGGAATGGGTAGAATTC  1165
      ||||||||||||||||||||
seq2  GGAGGGAATGGGTAGAATTC  1158

seq1: chr19_29609056_29610117
seq2: B6Ng01-192I09.g_133_1197

seq1  ACAAAATTGTTTGAATCATATGTAGTGTCAGACTGCTTTTAATAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTGTTTGAATCATATGTAGTGTCAGACTGCTTTTAATAGTTACA  50

seq1  ATACTTTCAGAAGTCAGAAAAGAAAATTTGTATCCCATATGGAATTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAGAAGTCAGAAAAGAAAATTTGTATCCCATATGGAATTATCA  100

seq1  GGAAATTAATTATCAGGAAATATCACAATTCAAATAGCATTCTTACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAATTATCAGGAAATATCACAATTCAAATAGCATTCTTACAACC  150

seq1  TTGATACAAATGCAAAGAAAAGTTTTTGTAAAAAAATTTTTTTTAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAAATGCAAAGAAAAGTTTTTGTAAAAAAATTTTTTTTAGTTGT  200

seq1  GCATAAGAGAAACTTCTAAGCTTCTACTGTTTCTTGGATCATACATCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAGAAACTTCTAAGCTTCTACTGTTTCTTGGATCATACATCTAT  250

seq1  AATCCCAGCACTTGGGAGGCTAAAGCTCAACTGTTGCAAGTTCAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCTAAAGCTCAACTGTTGCAAGTTCAAAATAA  300

seq1  GCCTGGGCTACATAGCAGGGTCCAGTCCAGCCAGGGCTACATACTTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCTACATAGCAGGGTCCAGTCCAGCCAGGGCTACATACTTAGCA  350

seq1  AGAGCTAGACTGTGTGTGGTGCGGGGAGCTCATATGAAAAGAGTTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGACTGTGTGTGGTGCGGGGAGCTCATATGAAAAGAGTTTTTAG  400

seq1  ATGTGATATATGTAAATTCTCATTACTGGCAAGCATTGATAAAGCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATATATGTAAATTCTCATTACTGGCAAGCATTGATAAAGCTTTGC  450

seq1  ATTCAGTTTGATCACTAGGAATAATAGCTTTAAATCCTAATTAACCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTGATCACTAGGAATAATAGCTTTAAATCCTAATTAACCAACA  500

seq1  GACTGTGACAATTATAAAACTTAAAAAAAATTCTTCCTCTGTTTTGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGACAATTATAAAACTTAAAAAAAATTCTTCCTCTGTTTTGATCA  550

seq1  TGGTTTTTAATTTTCTGTAATTTGGAAACTCTGACATCTTGGGTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTAATTTTCTGTAATTTGGAAACTCTGACATCTTGGGTCTTTGT  600

seq1  TTTCACAGGAAAAATTGCCTTTAACTCTGTTTATCTGAGAGCCAAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGGAAAAATTGCCTTTAACTCTGTTTATCTGAGAGCCAAGTACC  650

seq1  AGAGTCCAGTGATATTATTCAAGGTAGCCAATACTAAGCTTCTTTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAGTGATATTATTCAAGGTAGCCAATACTAAGCTTCTTTGCTTT  700

seq1  GCTCCACCCATTTCTTCCCATGTGATTTGGGCTTTTTATTGCTGTGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACCCATTTCTTCCCATGTGATTTGGGCTTTTTATTGCTGTGATAA  750

seq1  AACACCATAACCAAAAGGGAGAGGAAAGGGTTTGTTTTAGC-TTACTATC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACACCATAACCAAAAGGGAGAGGAAAGGGTTTGTTTTAGCTTTACTATC  800

seq1  CTCAGGTCACACTTGATCACCAAGGG-AAGCTGACTCAGGGCTG-AAACA  847
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  CTCAGGTCACACTTGATCACCAAGGGAAAGCTGACTCAGGGCTGAAAACA  850

seq1  GGAGCCATGGAGGGGTGCTGCTCGCTGGCTTCCTCCTATGACTTGCTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGGAGGGGTGCTGCTCGCTGGCTTCCTCCTATGACTTGCTCAG  900

seq1  CCTGCTTTCCTAAAGCAGCCAGGATCA--CCTGCCCAGTGG-TAGCACTG  944
       ||||||||||||||||||||||||||  | ||||  |||| ||||||||
seq2  TCTGCTTTCCTAAAGCAGCCAGGATCAACCTTGCCAGGTGGATAGCACTG  950

seq1  CCTTCAATGAGCCGTCCCA-CATAACCACTAATTCAGAAGA-TATGCTAT  992
      |||||| |||| ||||||| ||| ||||||||||||||||| ||||||||
seq2  CCTTCATTGAGTCGTCCCACCATTACCACTAATTCAGAAGATTATGCTAT  1000

seq1  AGACTTAGCTACAGC-TCAGACTTACTGGAGATTTTTTTTTTTTTTTTCT  1041
        ||||||||| ||| ||||||| ||||||||||||||||||||| |   
seq2  GAACTTAGCTA-AGCTTCAGACTAACTGGAGATTTTTTTTTTTTTCT---  1046

seq1  TCCCAATTG-ACAGTCCTCTTC  1062
        ||||||| ||||| ||||||
seq2  --CCAATTGAACAGT-CTCTTC  1065