BAC Information

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BAC

Clone NameB6Ng01-192N13
Chromosome19 (Build37)
Map Location 9,200,190 - 9,321,959
singlet/doubletdoublet
Overlap geneAsrgl1, EG621699
Upstream geneEG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
Downstream geneLOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192N13.bB6Ng01-192N13.g
ACCGA015977GA015978
length1,1471,087
definitionB6Ng01-192N13.b B6Ng01-192N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,200,190 - 9,200,796)(9,320,861 - 9,321,959)
sequence
gaattctgtaggcttcttgtatgttcatgggcatctctttctttagttaa
gggaagttttcttctacaattttgttgaagatatttactggccctttaag
ttgggaatcttcactctcttctatacctattatccttaggattggtcttc
tcattgtgtcctggatttcctggatgttttgggttaggagctttttgctt
tttgcattttctttgactgttgtgtcaatgttttctatgcacctgagatt
ctctcttctctctcttgtattctgttggtgatgcttgcatctatgactcc
tgatatctttcctaggttttctaactccagggttgtctccttttgtgatt
tctttattgtttttatttccattcttagatcttggatggttttgttcatt
tcctttacccctttgtgttttcctgtaattctttgagggatttttgtgtt
ccctctttaagggcttctagctgtttacctgtgttctcctgtatttcttt
aagggagttatggccttcttaaaatactctatcaccatcatcatgagaag
ttattttagacccaaatcttgcttttctggtgtgatggtgtacccaggtc
atactatggtgggagaattgtgttctaattatgccaagtaatcttggttt
ctgttgcttatgttcttatacttgcctcccaccatctggctatctctagt
gctacctgcccttgctattatctgactggggcctgtctttcctgtgatcc
tggttgtgtcagatctcctcagagttcagctttttctgtgatcctgtgat
tttaggatcctgcgatcctgagatcttgggtgtgttaatagtcctgggag
tcaactgcctctgggactctgagatcctggtgtgaccaagctcctgtggt
cctgtagtcctgggacattgttagagcacctgggagtgaagcttcctctg
agtatttgtgggactgggctgcagagtttcgtgccaaagtttgcttcagg
gcactggaccagaccagaaggccatcatagcatctgattacaataaattt
ttgtcatttgcattgacctgctgtttgagtatgtgggttagtgaaccttc
aacacagtggggccttgcctctctctcttggcctgctccagtttatg
gaattccatgctgtaggagagaataaaagttgtgacaggagagaattgtg
tgtccattgaggtatccatgattttagagacagtcacgtgaacagttttt
ggcaagtgaaagtacttaccaatacttaatagaaagaaaaaacatgaaag
acattgactcaagtgacttggatcattacagaaaaaaaaaaaaaactaca
caagaacaggcactttccaattgatttttttaatttaattttcctaacaa
cttttgtttatttatttatacattaactttacttccagtccctctatccc
acatctcctcttacagaaaccatctaggagagcaagccagtgagtttcct
ggagttgtcttaccattttgcttgactatgatgggtgcactctggagagg
cacagacccagagacttcatcccagggtggcttcttgcagttgatatgcc
tttcctgccagttttacatagcctaatgattattgggcccaccctactgc
acagatttcctgcagatcaatatgaagatggaccttcatgaattaaagcc
atttagatgaattagttgctttaaacagttcctgatttgattcaagtaat
tttagggaaaaaatataagagatgattttagctgttttggcagaaagatg
aaataaaattagaattcagagtagaatgtgcccactcctactaagaaatg
taagtaaaggctgcattgcactgaaaagagaattaggcatgggaaacttt
tataatcaaggaaaaacattcattctagatctgatccaaggataaagtca
caggtgtgcactataatgaagtgatgccaggtgaaactgttgctttgaac
ttgtgatgagcttatagaatgaaacactgctttgcatttactatccacac
ccttctataactccctttggtgtacattttatctatgaggtaattttaca
cagaacctttgtctaagggtattgattgccattggggctttgatctgttg
tgtctttttttctgatgtagatatgtatttctgtatttccatcagtgtgt
accctcttgtgttacaggtttcatctaagactgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9200190_9200796
seq2: B6Ng01-192N13.b_584_1192

seq1  CATCATGAGAAGTTATTTTAGACCCAAATCTTGCTTTTCTGGTGTGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAGAAGTTATTTTAGACCCAAATCTTGCTTTTCTGGTGTGATGG  50

seq1  TGTACCCAGGTCATACTATGGTGGGAGAATTGTGTTCTAATTATGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAGGTCATACTATGGTGGGAGAATTGTGTTCTAATTATGCCAAG  100

seq1  TAATCTTGGTTTCTGTTGCTTATGTTCTTATACTTGCCTCCCACCATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGGTTTCTGTTGCTTATGTTCTTATACTTGCCTCCCACCATCTG  150

seq1  GCTATCTCTAGTGCTACCTGCCCTTGCTATTATCTGACTGGGGCCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCTAGTGCTACCTGCCCTTGCTATTATCTGACTGGGGCCTGTCT  200

seq1  TTCCTGTGATCCTGGTTGTGTCAGATCTCCTCAGAGTTCAGCTTTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGATCCTGGTTGTGTCAGATCTCCTCAGAGTTCAGCTTTTTCTG  250

seq1  TGATCCTGTGATTTTAGGATCCTGCGATCCTGAGATCTTGGGTGTGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGTGATTTTAGGATCCTGCGATCCTGAGATCTTGGGTGTGTTAA  300

seq1  TAGTCCTGGGAGTCAACTGCCTCTGGGACTCTGAGATCCTGGTGTGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGGGAGTCAACTGCCTCTGGGACTCTGAGATCCTGGTGTGACCA  350

seq1  AGCTCCTGTGGTCCTGTAGTCCT-GGACA-TGTTAGAGCACCTGGGAGTG  398
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  AGCTCCTGTGGTCCTGTAGTCCTGGGACATTGTTAGAGCACCTGGGAGTG  400

seq1  AAGCTTCCTCTGAGTA-TTGTGGGACT-GGCTGCAGAG-TTCGTGCCAAA  445
      |||||||||||||||| |||||||||| |||||||||| |||||||||||
seq2  AAGCTTCCTCTGAGTATTTGTGGGACTGGGCTGCAGAGTTTCGTGCCAAA  450

seq1  GTTTGC-TCAGGGCACTGGCCCAGACCAGAAGGCCATCAATAGCATCTTG  494
      |||||| |||||||||||| |||||||||||||||||| |||||||| ||
seq2  GTTTGCTTCAGGGCACTGGACCAGACCAGAAGGCCATC-ATAGCATC-TG  498

seq1  ATTACAATAAATTTTTGTCATTTGCATTGACCTGGTGTTTGAGTTATGTT  544
      |||||||||||||||||||||||||||||||||| |||||||| |||| |
seq2  ATTACAATAAATTTTTGTCATTTGCATTGACCTGCTGTTTGAG-TATG-T  546

seq1  GGGTTTAAGTGGACCCTTCAACACAGTGGG--CTTGCCTTCTC-CTCTTT  591
      |||||  ||| || ||||||||||||||||  |||||| |||| ||||| 
seq2  GGGTT--AGT-GAACCTTCAACACAGTGGGGCCTTGCC-TCTCTCTCTTG  592

seq1  G-CTGTCTCAGTTTATG  607
      | |||   |||||||||
seq2  GCCTGCTCCAGTTTATG  609

seq1: chr19_9320861_9321959
seq2: B6Ng01-192N13.g_67_1153 (reverse)

seq1  CAGACAGTCCTAGATGGAAAACTGTAACACAAGGAGGGTAACAACACTGA  50
      ||||||||| ||||| |||| ||||||||||| |||||||   |||||||
seq2  CAGACAGTCTTAGAT-GAAACCTGTAACACAA-GAGGGTA--CACACTGA  46

seq1  TGAAAATACAAGAAATACATAATTCTACATCAGGAAAAAAAGACACAAAC  100
      || |||||| |||||||||||  ||||||||| ||||||||||||| |||
seq2  TGGAAATAC-AGAAATACATA--TCTACATCA-GAAAAAAAGACAC-AAC  91

seq1  AGATCAAAGCCCCAATGGCAATCAATACCCCCTTAGACAAAGGTTCTGTG  150
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AGATCAAAGCCCCAATGGCAATCAATA--CCCTTAGACAAAGGTTCTGTG  139

seq1  TAAAATTACCTCATAGATAAAATGTTACACCAAAGGGAGTTATAGAAGGG  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAAATTACCTCATAGATAAAATG-TACACCAAAGGGAGTTATAGAAGGG  188

seq1  TGTGGATAGTAAATGCAAAGCAGTGTTTCATTCTATAAGCTCATCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAGTAAATGCAAAGCAGTGTTTCATTCTATAAGCTCATCACAAG  238

seq1  TTCAAAGCAACAGTTTCACCTGGCATCACTTCATTATAGTGCACACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAACAGTTTCACCTGGCATCACTTCATTATAGTGCACACCTGT  288

seq1  GACTTTATCCTTGGATCAGATCTAGAATGAATGTTTTTCCTTGATTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATCCTTGGATCAGATCTAGAATGAATGTTTTTCCTTGATTATAA  338

seq1  AAGTTTCCCATGCCTAATTCTCTTTTCAGTGCAATGCAGCCTTTACTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCCATGCCTAATTCTCTTTTCAGTGCAATGCAGCCTTTACTTAC  388

seq1  ATTTCTTAGTAGGAGTGGGCACATTCTACTCTGAATTCTAATTTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAGTAGGAGTGGGCACATTCTACTCTGAATTCTAATTTTATTTC  438

seq1  ATCTTTCTGCCAAAACAGCTAAAATCATCTCTTATATTTTTTCCCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGCCAAAACAGCTAAAATCATCTCTTATATTTTTTCCCTAAAA  488

seq1  TTACTTGAATCAAATCAGGAACTGTTTAAAGCAACTAATTCATCTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAATCAAATCAGGAACTGTTTAAAGCAACTAATTCATCTAAATG  538

seq1  GCTTTAATTCATGAAGGTCCATCTTCATATTGATCTGCAGGAAATCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATTCATGAAGGTCCATCTTCATATTGATCTGCAGGAAATCTGTG  588

seq1  CAGTAGGGTGGGCCCAATAATCATTAGGCTATGTAAAACTGGCAGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGTGGGCCCAATAATCATTAGGCTATGTAAAACTGGCAGGAAAG  638

seq1  GCATATCAACTGCAAGAAGCCACCCTGGGATGAAGTCTCTGGGTCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAACTGCAAGAAGCCACCCTGGGATGAAGTCTCTGGGTCTGTGC  688

seq1  CTCTCCAGAGTGCACCCATCATAGTCAAGCAAAATGGTAAGACAACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGAGTGCACCCATCATAGTCAAGCAAAATGGTAAGACAACTCCA  738

seq1  GGAAACTCACTGGCTTGCTCTCCTAGATGGTTTCTGTAAGAGGAGATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCACTGGCTTGCTCTCCTAGATGGTTTCTGTAAGAGGAGATGTG  788

seq1  GGATAGAGGGACTGGAAGTAAAGTTAATGTATAAATAAATAAACAAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGGGACTGGAAGTAAAGTTAATGTATAAATAAATAAACAAAAGT  838

seq1  TGTTAGGAAAATTAAATTAAAAAAATCAATTGGAAAGTGCCTGTTCTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAAAATTAAATTAAAAAAATCAATTGGAAAGTGCCTGTTCTTGT  888

seq1  GTAGTTTTTTTTTTTTTTCTGTAATGATCCAAGTCACTTGAGTCAATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTTTTTTTTTTCTGTAATGATCCAAGTCACTTGAGTCAATGTC  938

seq1  TTTCATGTTTTTTCTTTCTATTAAGTATTGGTAAGTACTTTCACTTGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTTTTCTTTCTATTAAGTATTGGTAAGTACTTTCACTTGCCA  988

seq1  AAAACTGTTCACGTGACTGTCTCTAAAATCATGGATACCTCAATGGACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTCACGTGACTGTCTCTAAAATCATGGATACCTCAATGGACAC  1038

seq1  ACAATTCTCTCCTGTCACAACTTTTATTCTCTCCTACAGCATGGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTCTCCTGTCACAACTTTTATTCTCTCCTACAGCATGGAATTC  1087