BAC Information

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BAC

Clone NameB6Ng01-194E01
Chromosome19 (Build37)
Map Location 16,327,214 - 16,455,064
singlet/doubletdoublet
Overlap geneGnaq, LOC624438
Upstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, E030024N20Rik
Downstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194E01.bB6Ng01-194E01.g
ACCGA016999GA017000
length1,172604
definitionB6Ng01-194E01.b B6Ng01-194E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,453,898 - 16,455,064)(16,327,214 - 16,327,816)
sequence
gaattccaagtactctaggaacagttttgcagttcaaatctacatggaga
tagtaatttctcttcatgaagagaaacagaaatgacattcatcagattac
aaccttgaaaagaagacatgtacatctgtgaaacggataatcctctagta
agcttattatcaggttatcactatagtgtgctgaagagctttctcagtac
cagctcatctcccaaggtctttggatctcaaaaaatgacaactttgttct
cccaagaacaacaaaatcatcacctttgttaacttagctgtggccatacc
tccttcggacattatatgtccattgtagaaagtcaacagttaaaatcatc
ttcaaattccaaaacattcacaacaggctccctttggaaggaaaccactt
gtagttttaagggttcaggacaagactacagaaagtggtagtcctgcaaa
gacctcctccccagaacaccttgaaatgctgtgtagccagccatcacgtg
actgcaggtgagcagccaggttctgtggctgcacaatgctaactgtttgt
attgaagcaggaaaacggggccacagtgctactgctgtgtatggtatggt
cattttctatccactgactcaccaactctggagagagatgaagcctgcct
tctgggtgtaagagcaagtaaacatgtaagcagctgcttcttgcccccgt
cctcaggccatgtgctgacaggactgtcgtgctacggacggggagcaggt
acaccgcctacaggcgtttccttccacagctaaggaagtagcatgtaaca
ttgaagcatttactgtttgctcctgggtgagtgagaaaatagaaggagca
aagagaaactgctccagcctggtctacagagtgagctccaggacagccag
ggctacacagagaaaccctgtctcgaaaaaaccaaaaagagagagagaga
gagagaaactgctgtctaggttaagcagtatttgttctcttaaaacatcc
aggtaaacaggaaaatgtctggagaagacagaacatgctactgcaccacc
cactggccaataggctcgtcagctctggacggcagagagaactggagcat
cttaggttttcacatcaatttattgtctgtcaacaccacctcacttctgg
atggtggtgtggataacatagg
gaattccttgaatttagaaaactttcttcctggaaagagccgatgtgatt
ctttttctgtaagcagcatagggagcagatatcaactgagaccttaaaga
aacaggaaccaaagatggaacataagctgcagccgtgttacgaggcagtg
ggcatgtctggccattttgcccaacttctctattctgctgtatttcagag
gaagagaaatgacgagtggttaggaggcttgggggtcaggggtgaggtgg
ctttgcttcaagtagggaacaagaatgagagaaaataatgattggtgttg
ccattgttttgagtaagtctaagaatatgagttctttcttcctaaatgca
aagaacaaagaggagttccccacaccttctccctaacctgaggctgcaat
tctagcttagagctgcagccattagtgcagggtactctacataatcacat
cgtttcccaaggagaatgcactgttgttgaattctgatttctctgcctct
caccctaagtagccgtgatttctgtcagaataccttgtttgctaggaatg
tgccatgtcatgacctcagaggcactggaaagttatgaaataggtcagat
attc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16453898_16455064
seq2: B6Ng01-194E01.b_44_1215 (reverse)

seq1  CCTATGTTATCCCCACCA-CAT-CAGAAGTGA-GTGGTGTTGACAGACAT  47
      |||||||||||| ||||| ||| ||||||||| |||||||||||||||| 
seq2  CCTATGTTATCCACACCACCATCCAGAAGTGAGGTGGTGTTGACAGACAA  50

seq1  TAAA-TGATGTGAAAAACCTAAGATGCT-CAG-TCTCT-GGCCGTTCCCA  93
      |||| ||||||| ||||||||||||||| ||| |||||  |||||  |||
seq2  TAAATTGATGTG-AAAACCTAAGATGCTCCAGTTCTCTCTGCCGT--CCA  97

seq1  GAGCTGACGAGCCTA-TGGCCAGTTGGGTGTGCAGTAGCATGTTCTGTC-  141
      ||||||||||||||| |||||||| ||  |||||||||||||||||||| 
seq2  GAGCTGACGAGCCTATTGGCCAGTGGGTGGTGCAGTAGCATGTTCTGTCT  147

seq1  TCTCCAGACATTTTCCTGTTTACCTGGATGTTTTAAGAGAACAAATACTG  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGACATTTTCCTGTTTACCTGGATGTTTTAAGAGAACAAATACTG  197

seq1  CTTAACCTAGACAGCAGTTTCTCTCTCTCTCTCTCTCTTTTTGGTTTTTT  241
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAACCTAGACAGCAGTTTCTCTCTCTCTCTCTCTCTTTTTGG-TTTTT  246

seq1  TCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACTCTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACTCTG  296

seq1  TAGACCAGGCTGGAGCAGTTTCTCTTTGCTCCTTCTATTTTCTCACTCAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGAGCAGTTTCTCTTTGCTCCTTCTATTTTCTCACTCAC  346

seq1  CCAGGAGCAAACAGTAAATGCTTCAATGTTACATGCTACTTCCTTAGCTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCAAACAGTAAATGCTTCAATGTTACATGCTACTTCCTTAGCTG  396

seq1  TGGAAGGAAACGCCTGTAGGCGGTGTACCTGCTCCCCGTCCGTAGCACGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAACGCCTGTAGGCGGTGTACCTGCTCCCCGTCCGTAGCACGA  446

seq1  CAGTCCTGTCAGCACATGGCCTGAGGACGGGGGCAAGAAGCAGCTGCTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGTCAGCACATGGCCTGAGGACGGGGGCAAGAAGCAGCTGCTTA  496

seq1  CATGTTTACTTGCTCTTACACCCAGAAGGCAGGCTTCATCTCTCTCCAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTACTTGCTCTTACACCCAGAAGGCAGGCTTCATCTCTCTCCAGA  546

seq1  GTTGGTGAGTCAGTGGATAGAAAATGACCATACCATACACAGCAGTAGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAGTCAGTGGATAGAAAATGACCATACCATACACAGCAGTAGCA  596

seq1  CTGTGGCCCCGTTTTCCTGCTTCAATACAAACAGTTAGCATTGTGCAGCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCCCGTTTTCCTGCTTCAATACAAACAGTTAGCATTGTGCAGCC  646

seq1  ACAGAACCTGGCTGCTCACCTGCAGTCACGTGATGGCTGGCTACACAGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCTGGCTGCTCACCTGCAGTCACGTGATGGCTGGCTACACAGCA  696

seq1  TTTCAAGGTGTTCTGGGGAGGAGGTCTTTGCAGGACTACCACTTTCTGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTGTTCTGGGGAGGAGGTCTTTGCAGGACTACCACTTTCTGTA  746

seq1  GTCTTGTCCTGAACCCTTAAAACTACAAGTGGTTTCCTTCCAAAGGGAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCCTGAACCCTTAAAACTACAAGTGGTTTCCTTCCAAAGGGAGC  796

seq1  CTGTTGTGAATGTTTTGGAATTTGAAGATGATTTTAACTGTTGACTTTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGAATGTTTTGGAATTTGAAGATGATTTTAACTGTTGACTTTCT  846

seq1  ACAATGGACATATAATGTCCGAAGGAGGTATGGCCACAGCTAAGTTAACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGACATATAATGTCCGAAGGAGGTATGGCCACAGCTAAGTTAACA  896

seq1  AAGGTGATGATTTTGTTGTTCTTGGGAGAACAAAGTTGTCATTTTTTGAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATGATTTTGTTGTTCTTGGGAGAACAAAGTTGTCATTTTTTGAG  946

seq1  ATCCAAAGACCTTGGGAGATGAGCTGGTACTGAGAAAGCTCTTCAGCACA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGACCTTGGGAGATGAGCTGGTACTGAGAAAGCTCTTCAGCACA  996

seq1  CTATAGTGATAACCTGATAATAAGCTTACTAGAGGATTATCCGTTTCACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTGATAACCTGATAATAAGCTTACTAGAGGATTATCCGTTTCACA  1046

seq1  GATGTACATGTCTTCTTTTCAAGGTTGTAATCTGATGAATGTCATTTCTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACATGTCTTCTTTTCAAGGTTGTAATCTGATGAATGTCATTTCTG  1096

seq1  TTTCTCTTCATGAAGAGAAATTACTATCTCCATGTAGATTTGAACTGCAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCATGAAGAGAAATTACTATCTCCATGTAGATTTGAACTGCAA  1146

seq1  AACTGTTCCTAGAGTACTTGGAATTC  1167
      ||||||||||||||||||||||||||
seq2  AACTGTTCCTAGAGTACTTGGAATTC  1172

seq1: chr19_16327214_16327816
seq2: B6Ng01-194E01.g_62_665

seq1  GAATTCCTTGAATTTAGAAAACTTTCTTCCTGGAAAGAGCCGATGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAATTTAGAAAACTTTCTTCCTGGAAAGAGCCGATGTGATT  50

seq1  CTTTTTCTGTAAGCAGCATAGGGAGCAGATATCAACTGAGACCTTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGTAAGCAGCATAGGGAGCAGATATCAACTGAGACCTTAAAGA  100

seq1  AACAGGAACCAAAGATGGAACATAAGCTGCAGCCGTGTTACGAGGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAACCAAAGATGGAACATAAGCTGCAGCCGTGTTACGAGGCAGTG  150

seq1  GGCATGTCTGGCCATTTTGCCCAACTTCTCTATTCTGCTGTATTTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCTGGCCATTTTGCCCAACTTCTCTATTCTGCTGTATTTCAGAG  200

seq1  GAAGAGAAATGACGAGTGGTTAGGAGGCTTGGGGGTCAGGGGTGAGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAATGACGAGTGGTTAGGAGGCTTGGGGGTCAGGGGTGAGGTGG  250

seq1  CTTTGCTTCAAGTAGGGAACAAGAATGAGAGAAAATAATGATTGGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCAAGTAGGGAACAAGAATGAGAGAAAATAATGATTGGTGTTG  300

seq1  CCATTGTTTTGAGTAAGTCTAAGAATATGAGTTCTTTCTTCCTAAATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTTGAGTAAGTCTAAGAATATGAGTTCTTTCTTCCTAAATGCA  350

seq1  AAGAACAAAGAGGAGTTCCCCACACCTTCTCCCTAACCTGAGGCTGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAGAGGAGTTCCCCACACCTTCTCCCTAACCTGAGGCTGCAAT  400

seq1  TCTAGCTTAGAGCTGCAGCCATTAGTGCAGGGTACTCTACATAATCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTAGAGCTGCAGCCATTAGTGCAGGGTACTCTACATAATCACAT  450

seq1  CGTTTCCCAAGGAGAATGCACTGTTGTTGAATTCTGATTTCTCTGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCCAAGGAGAATGCACTGTTGTTGAATTCTGATTTCTCTGCCTCT  500

seq1  CACCCTAAGTAGCCGTGATTTCTGTCAGAATACCTTGTTTGCTAGGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAAGTAGCCGTGATTTCTGTCAGAATACCTTGTTTGCTAGGAATG  550

seq1  TGCCATGTCATGACCTCAGAGGCACTGG-AAGTTAAGAAATAGGTCAGAA  599
      |||||||||||||||||||||||||||| |||||| ||||||||||||| 
seq2  TGCCATGTCATGACCTCAGAGGCACTGGAAAGTTATGAAATAGGTCAGAT  600

seq1  ATTC  603
      ||||
seq2  ATTC  604