BAC Information

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BAC

Clone NameB6Ng01-196G06
Chromosome19 (Build37)
Map Location 18,467,866 - 18,468,959
singlet/doubletsinglet
Overlap genenone
Upstream geneRfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196G06.bB6Ng01-196G06.g
ACCGA018547GA018548
length1,1011,157
definitionB6Ng01-196G06.b B6Ng01-196G06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggatggtgatctccaatctgaactcaattctctttatcacat
taacaacataagaaaataatttataataacacaattttatgtcctgatac
ctacctaagaatgtttgtttttatgaagattcaataagataaaattatgc
gttttgaccacacctttcatacagcaggtatttaagggaaattcattttt
attattatctagtggtttcctcatgtattttggctgaatctgtgttttct
cccatattaagctgattacatttaactaaacaaatatatccattctttgt
tgcattctctttgtccttcttcagtttactatgttaatattttctgaagg
ctttgagactagatttcctaacaagtgggttttatatctggtctgaaagt
tccagatactctgggtcataagaacatggtttcatcttttcatctaaaat
gctccccaaatatgctttatgccatggactgtgttgggctagatgctaat
attattagaaagaacaaaaatggacccacagatcctctttgtatttcaaa
aaaatgaacacttgtaaatacaaaaatgttagtgacaggtagggggaata
gccctgagactggtagtttatgccaataatctggatgtcagggacatgca
ggcaggagtgccatagttgatactggtctaggatatatagtgagactaga
ccctgtctcccaccacccatgagaggtagttgaaaagaaagaagacaggg
gaaatggacctgtttaggaaggttctttggagcaactcctgtctgtgttg
tctggaaatcaggagttcggttcacaggttagccacagcagctcaagcca
ctcgcaaacacatcacagataccaccaggagtccaattcggtagagttag
gttagcagcagtagtgacacgacctaacagagacaaccagacctcagatt
aagtcagcaggagggacctgggaagacaccagaagttctggactgtgccg
ctctcagaaaaaggtgaagaagcagcaaagactttgagacttaacaagtg
ttacacagcctagctgttaccagcgaaccaagctctgtctcaatcactcc
g
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaatgt
tcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagatt
ccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagca
gatgctggcgaggatgtggagaaaggggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctgccggttcctcag
aaaattggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
aatactactcagctattaaaaaaatgaatttatcaaattcctaggcaaat
ggatggacctggagggtatcatcctgagtgaggtaacccaatcacaaagg
aactctcacaatatgtactcactgataagtggatattagcccagaaactt
aggatacccaagatataagatacaacttgccaaacgcatgaaattcaaga
agaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaac
aaaacacccatggaaggagttacagagacaaaatttggagctgtgacgaa
agaatggaccatctagtgattgccatatgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctctctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgatcacagtcagctattggatgggtcacacggccccaat
gagagctagagaataccccaggagctaaaggaactgcaacctatagtgac
acaatatgactaccagtactgggagctcttgtctctagctgcatatgtat
caaaggatgctagtccgcatcactgccaatgaagcaatgacttgccaaac
cttaatgcagtagtacgtcagtcaacatgggctagctggctggcctagcg
gaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18467866_18468959
seq2: B6Ng01-196G06.b_49_1149

seq1  GAATTCATGGATGGTGATCTCCAATCTGAACTCAATTCTCTTTATCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGATGGTGATCTCCAATCTGAACTCAATTCTCTTTATCACAT  50

seq1  TAACAACATAAGAAAATAATTTATAATAACACAATTTTATGTCCTGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACATAAGAAAATAATTTATAATAACACAATTTTATGTCCTGATAC  100

seq1  CTACCTAAGAATGTTTGTTTTTATGAAGATTCAATAAGATAAAATTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAGAATGTTTGTTTTTATGAAGATTCAATAAGATAAAATTATGC  150

seq1  GTTTTGACCACACCTTTCATACAGCAGGTATTTAAGGGAAATTCATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACCACACCTTTCATACAGCAGGTATTTAAGGGAAATTCATTTTT  200

seq1  ATTATTATCTAGTGGTTTCCTCATGTATTTTGGCTGAATCTGTGTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCTAGTGGTTTCCTCATGTATTTTGGCTGAATCTGTGTTTTCT  250

seq1  CCCATATTAAGCTGATTACATTTAACTAAACAAATATATCCATTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTAAGCTGATTACATTTAACTAAACAAATATATCCATTCTTTGT  300

seq1  TGCATTCTCTTTGTCCTTCTTCAGTTTACTATGTTAATATTTTCTGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCTTTGTCCTTCTTCAGTTTACTATGTTAATATTTTCTGAAGG  350

seq1  CTTTGAGACTAGATTTCCTAACAAGTGGGTTTTATATCTGGTCTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACTAGATTTCCTAACAAGTGGGTTTTATATCTGGTCTGAAAGT  400

seq1  TCCAGATACTCTGGGTCATAAGAACATGGTTTCATCTTTTCATCTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATACTCTGGGTCATAAGAACATGGTTTCATCTTTTCATCTAAAAT  450

seq1  GCTCCCCAAATATGCTTTATGCCATGGACTGTGTTGGGCTAGATGCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAAATATGCTTTATGCCATGGACTGTGTTGGGCTAGATGCTAAT  500

seq1  ATTATTAGAAAGAACAAAAATGGACCCACAGATCCTCTTTGTATTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGAAAGAACAAAAATGGACCCACAGATCCTCTTTGTATTTCAAA  550

seq1  AAAATGAACACTTGTAAATACAAAAATGTTAGTGACAGGTAGGGGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACACTTGTAAATACAAAAATGTTAGTGACAGGTAGGGGGAATA  600

seq1  GCCCTGAGACTGGTAGTTTATGCCAATAATCTGGATGTCAGGGACATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGACTGGTAGTTTATGCCAATAATCTGGATGTCAGGGACATGCA  650

seq1  GGCAGGAGTGCCATAGTTGATACTGGTCTAGGATATATAGTGAGACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGTGCCATAGTTGATACTGGTCTAGGATATATAGTGAGACTAGA  700

seq1  CCCTGTCTCCCACCACCCATGAGAGGTAGTTGAAAAGAAAGAAGACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCCCACCACCCATGAGAGGTAGTTGAAAAGAAAGAAGACAGGG  750

seq1  GAAATGGACCTGTTTAGGAAGGTTCTTTGGAGCAACTCCTGTCTGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGACCTGTTTAGGAAGGTTCTTTGGAGCAACTCCTGTCTGTGTTG  800

seq1  TCTGGAAATCAGGAGTTCGGTTCACAGGTTAGCCACAGCAGCTCAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATCAGGAGTTCGGTTCACAGGTTAGCCACAGCAGCTCAAGCCA  850

seq1  CTCGCAAACACATCACAGATACCACCAGGAGTCCAATTCGGTAGAGTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAAACACATCACAGATACCACCAGGAGTCCAATTCGGTAGAGTTAG  900

seq1  GTTAGCAGCAGTAGTGACACGACCTAACAGAGACAACCAGACCTCAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGCAGTAGTGACACGACCTAACAGAGACAACCAGACCTCAGATT  950

seq1  AAGTCAGCAGGAGGGACCTGGAAAGACACCAGAAGTTCTGGACTGTGCCG  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGTCAGCAGGAGGGACCTGGGAAGACACCAGAAGTTCTGGACTGTGCCG  1000

seq1  CTCTCAGAAAA--GTGAAG-AGCAGCAAAGAC-TTGAGACCT-ACAAGTG  1045
      |||||||||||  |||||| |||||||||||| ||||||| | |||||||
seq2  CTCTCAGAAAAAGGTGAAGAAGCAGCAAAGACTTTGAGACTTAACAAGTG  1050

seq1  TTACACAG-CTAGCTG-TACCAGCGAACCAAGCTCTGTCTCCATCACTCC  1093
      |||||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  TTACACAGCCTAGCTGTTACCAGCGAACCAAGCTCTGTCTCAATCACTCC  1100

seq1  G  1094
      |
seq2  G  1101