BAC Information

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BAC

Clone NameB6Ng01-196P09
Chromosome19 (Build37)18 (Build37)
Map Location 12,874,878 - 12,876,01744,069,030 - 44,069,356
singlet/doubletsingletsinglet
Overlap geneLpxn
Upstream geneStx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf
Downstream geneEG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P09.bB6Ng01-196P09.g
ACCGA018960GA018961
length1,166641
definitionB6Ng01-196P09.b B6Ng01-196P09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,874,878 - 12,876,017)(44,069,030 - 44,069,356)
sequence
gaattccaacactttgcatgttagaatgcaaccattctcttttctgtttt
ctaagcttcactccaatcagaaatgagagtccttcctggaccaagagaac
tcatgtatattaaacatgatgggacaggagtatcactgagcagaggatgt
gaagttatcctcggaagcatcagctcaccaaatctattataactctcctt
tctgctcacgagttaccaggactttcacttcctgtttccaatgaacacat
atttcaccagctcctgaagctactcctttggcttcatgcagactctaaaa
tttaaattagatgactaattttggtgtgacaaatatgagattactggcag
tgaagtctctgggcgtctccatgtgttagagtcatctcatccctaaattg
agaagatttaggtaaaaccttctaggtgaatacatgctactaacatccaa
ggcagtattgcataaaggaaatatttgcccacttgagccagcctgtcctt
gataaaatttctacacaagtagaaagagaaatccaccccaagtcttgggt
ttggattttagtcctgttgctgtttgttaaggcagggtctcattctagcc
caagctgacctggaactaacaaggtagcccaggctgaccttacactgtgg
ccagtcattcaacctagtctcaagtgctggctgggatcgtgggtacaaac
tactgtgcctggcagacactacctgccttttgtttcattttggttttttg
agacagggcctcagtacatagcccttgtttgggctacaacttgctatgta
acataaaccagactggcctcaattcataggagatctatctgcttctgcct
tccatgtctgactttttaaagataggatcgtacattagatagcctaggct
ggcctcaaatttttccatacaaacaaaaataaccattagtttttgatcct
tcctgcttccaccttctggagccataaggattgaaggcaagcaacactac
atttccattgcaaattgttacaattttgaagaagaccattgaagggttaa
ctactagcagttaattaaacctgttagcaaattgggattatcctacagtc
cagcttccaaagttggcttatttttcctacatttctgtgaaaaaagattt
tcttaaacaacctatg
gaattcttgaatcaaatatgtgtccataacctgggaatatggattcaggt
taccccaactaacacgttctgacagcgaaaacatttcatgaagttctaca
gtcacattactataaaggtcagaagtcagagcaatctccaagtatgtagg
tagaaacatcatgtaggcttggtcacagcaaagtggagacatctctgcta
taggtctcaggtgctatctgatgacaatcgtagcttttgagttagaagat
gtcagagcctcctaagttcatagatacccaaaggttttccagacagttaa
aacatcaaaagaagccgggcatggtggtgcacgcttttcatcccagcact
cgggaggcagtggcaggcggatttttgagttcgaggccagcctggtctac
aaagtgagttccaggacagccagggctatacagagaaaaccctgtctcaa
aaaacaaaacaaaacaaaaacaaaaaaaaacaaaacaaaaaaaaaacatc
aaaagagtctttagattggagacagaggtgagaaatgtgtggctggaagg
gttctgaaatagctagagataatttttgcctctgagtgtacaatatctca
gttctcctcaactacagacttctgataatatgtccagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_12874878_12876017
seq2: B6Ng01-196P09.b_44_1209 (reverse)

seq1  CATA-GTTG-TTAAGGAAATCTTTTT---CAGAAATGTAG--AAAATAAG  43
      |||| |||| ||||| ||||||||||   |||||||||||  ||||||||
seq2  CATAGGTTGTTTAAGAAAATCTTTTTTCACAGAAATGTAGGAAAAATAAG  50

seq1  -CAACTTTGGAAGCT-GACTGTA-GATAAT-CCAATTTGCT-ACAGG-TT  87
       |||||||||||||| ||||||| |||||| |||||||||| ||||| ||
seq2  CCAACTTTGGAAGCTGGACTGTAGGATAATCCCAATTTGCTAACAGGTTT  100

seq1  AATAAACTGCTAGTAGTT-ACCCCTCAATGGTC-TCTTC-AAATTGTAAC  134
      ||| |||||||||||||| |||| ||||||||| ||||| ||||||||||
seq2  AATTAACTGCTAGTAGTTAACCCTTCAATGGTCTTCTTCAAAATTGTAAC  150

seq1  AATTTGC-ATGG-AATGTAGTGTTGCTTGCCTTCAATCCTTAT-GCTCCA  181
      ||||||| |||| |||||||||||||||||||||||||||||| ||||||
seq2  AATTTGCAATGGAAATGTAGTGTTGCTTGCCTTCAATCCTTATGGCTCCA  200

seq1  G-AGGTGGAAGCAGG-AGGATCAAAAACTAATGGTTATTTTTGTTTGTAT  229
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGAAGCAGGAAGGATCAAAAACTAATGGTTATTTTTGTTTGTAT  250

seq1  GG-AAAATTTGAGGCCAGCCTAGGCTATCT-ATGTACGATCCTATCTTTA  277
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAAAAATTTGAGGCCAGCCTAGGCTATCTAATGTACGATCCTATCTTTA  300

seq1  AAAAGTCAGACATGGAAGGCAGAAGCAGATAGATCT-CTATGAATTGAGG  326
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAGTCAGACATGGAAGGCAGAAGCAGATAGATCTCCTATGAATTGAGG  350

seq1  CCAGTCTGGTTTATGTTACATAGCAAGTTGTAGCCC-AACAAGGGCTATG  375
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGTCTGGTTTATGTTACATAGCAAGTTGTAGCCCAAACAAGGGCTATG  400

seq1  TACTGAGGCCCTGTCTC-AAAAACCAAAATGAAACAAAAGGCAGGTAGTG  424
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACTGAGGCCCTGTCTCAAAAAACCAAAATGAAACAAAAGGCAGGTAGTG  450

seq1  TCTGCCAGGCACAGTAGTTTGTACCCACGATCCCAGCCAGCACTTGAGAC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGCACAGTAGTTTGTACCCACGATCCCAGCCAGCACTTGAGAC  500

seq1  TAGGTTGAATGACTGGCCACAGTGTAAGGTCAGCCTGGGCTACCTTGTTA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGAATGACTGGCCACAGTGTAAGGTCAGCCTGGGCTACCTTGTTA  550

seq1  GTTCCAGGTCAGCTTGGGCTAGAATGAGACCCTGCCTTAACAAACAGCAA  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGTCAGCTTGGGCTAGAATGAGACCCTGCCTTAACAAACAGCAA  600

seq1  CAGGACTAAAATCCAAACCCAAGACTTGGGGTGGATTTCTCTTTCTACTT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTAAAATCCAAACCCAAGACTTGGGGTGGATTTCTCTTTCTACTT  650

seq1  GTGTAGAAATTTTATCAAGGACAGGCTGGCTCAAGTGGGCAAATATTTCC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAATTTTATCAAGGACAGGCTGGCTCAAGTGGGCAAATATTTCC  700

seq1  TTTATGCAATACTGCCTTGGATGTTAGTAGCATGTATTCACCTAGAAGGT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAATACTGCCTTGGATGTTAGTAGCATGTATTCACCTAGAAGGT  750

seq1  TTTACCTAAATCTTCTCAATTTAGGGATGAGATGACTCTAACACATGGAG  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAAATCTTCTCAATTTAGGGATGAGATGACTCTAACACATGGAG  800

seq1  ACGCCCAGAGACTTCACTGCCAGTAATCTCATATTTGTCACACCAAAATT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCAGAGACTTCACTGCCAGTAATCTCATATTTGTCACACCAAAATT  850

seq1  AGTCATCTAATTTAAATTTTAGAGTCTGCATGAAGCCAAAGGAGTAGCTT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTAATTTAAATTTTAGAGTCTGCATGAAGCCAAAGGAGTAGCTT  900

seq1  CAGGAGCTGGTGAAATATGTGTTCATTGGAAACAGGAAGTGAAAGTCCTG  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTGGTGAAATATGTGTTCATTGGAAACAGGAAGTGAAAGTCCTG  950

seq1  GTAACTCGTGAGCAGAAAGGAGAGTTATAATAGATTTGGTGAGCTGATGC  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCGTGAGCAGAAAGGAGAGTTATAATAGATTTGGTGAGCTGATGC  1000

seq1  TTCCGAGGATAACTTCACATCCTCTGCTCAGTGATACTCCTGTCCCATCA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGGATAACTTCACATCCTCTGCTCAGTGATACTCCTGTCCCATCA  1050

seq1  TGTTTAATATACATGAGTTCTCTTGGTCCAGGAAGGACTCTCATTTCTGA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATATACATGAGTTCTCTTGGTCCAGGAAGGACTCTCATTTCTGA  1100

seq1  TTGGAGTGAAGCTTAGAAAACAGAAAAGAGAATGGTTGCATTCTAACATG  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGAAGCTTAGAAAACAGAAAAGAGAATGGTTGCATTCTAACATG  1150

seq1  CAAAGTGTTGGAATTC  1140
      ||||||||||||||||
seq2  CAAAGTGTTGGAATTC  1166

seq1: chr18_44069030_44069356
seq2: B6Ng01-196P09.g_67_563 (reverse)

seq1  TGTTTGTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGT  50
      ||||| ||||||| |||||||||  ||||||||||||||||  ||| | |
seq2  TGTTTTTTTTTTG-TTTTGTTTT--TTTTTGTTTTTGTTTTGTTTTGTTT  47

seq1  TTTG-GACAGGG-TTTCTCTGTATAGCCCTAGCTGACCTGGAACTCACTT  98
      |||| ||||||| ||||||||||||||||| |||| ||||||||||||||
seq2  TTTGAGACAGGGTTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  97

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCCCTGCCTCCC  148
      ||||||||||||||||||| |||||| ||||||||||||| |||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAAAAATCCGCCTGCCACTGCCTCCC  147

seq1  GAGTGCTGGGATTAAAGGCGTGCACCACCACTCCCGGC--CTACTG-TGC  195
      |||||||||||| ||| |||||||||||||  ||||||  ||  || || 
seq2  GAGTGCTGGGATGAAAAGCGTGCACCACCATGCCCGGCTTCTTTTGATGT  197

seq1  TTT-------TGGA------TTGGG-------------------------  207
      |||       ||||      |||||                         
seq2  TTTAACTGTCTGGAAAACCTTTGGGTATCTATGAACTTAGGAGGCTCTGA  247

seq1  -AT-TTCTAACTGAAA------TTTTGGGCTCAGAT---TCCTG---GCT  243
       || |||||||| |||        |||   ||||||    ||||    ||
seq2  CATCTTCTAACTCAAAAGCTACGATTGTCATCAGATAGCACCTGAGACCT  297

seq1  AT----GAAAT-TCT--------CTGGGAACCAAAAGTCT-CAT--TGTT  277
      ||    || || |||        ||| || |   ||| || |||  ||||
seq2  ATAGCAGAGATGTCTCCACTTTGCTGTGACC---AAGCCTACATGATGTT  344

seq1  CC--CAGGCAT-CTT--AAAATGGCCT-AGTTCAACCCAT-------ATT  314
       |  |   ||| |||  | | ||  || | |||   || |       || 
seq2  TCTACCTACATACTTGGAGATTGCTCTGACTTCTGACCTTTATAGTAATG  394

seq1  TGATTCAAGAATT-------------------------------------  327
      ||| |  |||| |                                     
seq2  TGACTGTAGAACTTCATGAAATGTTTTCGCTGTCAGAACGTGTTAGTTGG  444

seq1  --------------------------------------------------  327
                                                        
seq2  GGTAACCTGAATCCATATTCCCAGGTTATGGACACATATTTGATTCAAGA  494

seq1  ---  327
         
seq2  ATT  497