BAC Information

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BAC

Clone NameB6Ng01-198F10
Chromosome19 (Build37)
Map Location 5,981,979 - 6,098,486
singlet/doubletdoublet
Overlap geneSlc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550
Upstream geneNpas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2
Downstream geneNaaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198F10.bB6Ng01-198F10.g
ACCGA019961GA019962
length867729
definitionB6Ng01-198F10.b B6Ng01-198F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,981,979 - 5,982,840)(6,097,760 - 6,098,486)
sequence
gaattctatttgttaaacttgaagtcaactgctttcactgactgacccat
cttgcctgcccattttcctccctccctccctctctctctctctttctctt
tctttctttctttttcttttttccttgagacagggtttatctgtgtagcc
ctggctgtcctggaactcactctgtagaccaggctggcctggaactcaga
aatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaa
cactgcctggcgctctcttttttctttccttcttccttccttcctttctt
ccttccttcctttctttctttctttctttctttctttctttctttctttc
tttctttttttctttcttccttccttccttccctccctctctctctctct
cttccttccttcctttatctttcttttttctttttcttttctttcctttt
tcttctttttttttttttttagcatatcatacagagaatcattgaagagt
ccttcaaatctaagacacccttggtattaaatttgcatctggctcttgcc
ctagctgcttggccttgaaaaaaatcatggcccctttctgggctatactt
cagttcccctcttacaaaatacaatgggtttttatgaagcacagtggaat
tgatacaggcaaaaataattttgtatgttccagagccccatgccacgtaa
agcggttggccaaagattccctaaagttattcacaagtacctgggaccct
gtggccctcatcatgcctctgttctctgtgtccagcacttccaaggtttt
tctacacctcacctatcagacacattgcccatcccagcatcttctcttgc
tggacgtaaccagaata
gaattcctaccaccttcctgcttcacaccccacgacctacaaaagaggtt
cttcgcaaccttagtctgtactctgaaattacagccttcaccctcaaggg
tgagaggacagccccttcctgtcccgtcccagaacttatcagagattctt
gattgagtctgaaggcagaactatgagttaggaaggtccagagacctagt
tctcagatccactggatgtccacctcacccaaggcccgtggatgcttggc
tctgcaattcagtggtgatctttattgctggggcttaaagaggggctgac
tggtggagcattcctgtggaattttctggggatgaggtggcttcatgcaa
aggtatgggagtgtcaaaggagtagtgcaggccagaagccctcttcggtt
gctcaagaggttggacttcctcctgggtagcccctgcttcctcctgggta
gcccctgcttcctcctgggtagcccctggtttctcctgagtgacctctgc
ttgctggctgacccttgctttcttttgaatgtccctctgctttgacttgc
gagtcttcatctgtttcctgagtgagcctggattcctctgggatgatcat
aatgctctccaggtcctcatacaccacggtaggctaggacaaagagttac
aagaactaaagtgggtggccaaccagcaggactaagtttcagcctcagga
gcaaaggggcaaaggctgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5981979_5982840
seq2: B6Ng01-198F10.b_50_916

seq1  GAATTCTATTTGTTAAACTTGAAGTCAACTGCTTTCACTGACTGACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTGTTAAACTTGAAGTCAACTGCTTTCACTGACTGACCCAT  50

seq1  CTTGCCTGCCCATTTTCCTCCCTCCCTCCCTCTCTCTCTCTCTTTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGCCCATTTTCCTCCCTCCCTCCCTCTCTCTCTCTCTTTCTCTT  100

seq1  TCTTTCTTTCTTTTTCTTTTTTCCTTGAGACAGGGTTTATCTGTGTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTTCTTTTTTCCTTGAGACAGGGTTTATCTGTGTAGCC  150

seq1  CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGA  200

seq1  AATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCAA  250

seq1  CACTGCCTGGCGCTCTCTTTTTTCTTTCCTTCTTCCTTCCTTCCTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTGGCGCTCTCTTTTTTCTTTCCTTCTTCCTTCCTTCCTTTCTT  300

seq1  CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  350

seq1  TTTCTTTTTTTCTTTCTTCCTTCCTTCCTTCCCTCCCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTCTTTCTTCCTTCCTTCCTTCCCTCCCTCTCTCTCTCTCT  400

seq1  CTTCCTTCCTTCCTTTATCTTTCTTTTTTCTTTTTCTTTTCTTTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTTATCTTTCTTTTTTCTTTTTCTTTTCTTTCCTTTT  450

seq1  TCTTCTTTTTTTTTTTTTTTAGCATATCATACAGAGAATCATTGAAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTTTTTTTTTTTAGCATATCATACAGAGAATCATTGAAGAGT  500

seq1  CCTTCAAATCTAAGACACCCTTGGTATTAAA-TTGCATCTGGCTCTTGCC  549
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTTCAAATCTAAGACACCCTTGGTATTAAATTTGCATCTGGCTCTTGCC  550

seq1  CTAGCTGCTTGGCCTTGAAAAAAATCATGGCCCCTTTCTGGGCTATACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCTTGGCCTTGAAAAAAATCATGGCCCCTTTCTGGGCTATACTT  600

seq1  CAGTTCCCCTCTTACAAAATACAATGGGTTTTTATGAAGCACAGTGGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCCTCTTACAAAATACAATGGGTTTTTATGAAGCACAGTGGAAT  650

seq1  TGATACAGGCAAAAATAATTTTGTATGTTCCAGAGCCCCATGCCACGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGATACAGGCAAAAATAATTTTGTATGTTCCAGAGCCCCATGCCACGTAA  700

seq1  AGCGGTTGGCCAAAGATTCCCTAAAGTTATTCACAAGTACCTGGGACCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTTGGCCAAAGATTCCCTAAAGTTATTCACAAGTACCTGGGACCCT  750

seq1  GTGGCCCTCATCATGCCTCTGTTCTCTGTGTCCAGCACTTCCAAGG-CTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||  | 
seq2  GTGGCCCTCATCATGCCTCTGTTCTCTGTGTCCAGCACTTCCAAGGTTTT  800

seq1  TCTACACCTCACCTATCAGACACA-TGCCCATCCCAGCA-CCTCTC-TGC  845
      |||||||||||||||||||||||| |||||||||||||| | |||| |||
seq2  TCTACACCTCACCTATCAGACACATTGCCCATCCCAGCATCTTCTCTTGC  850

seq1  TGGACGTACCAAGAATA  862
      |||||||| | ||||||
seq2  TGGACGTAACCAGAATA  867

seq1: chr19_6097760_6098486
seq2: B6Ng01-198F10.g_65_793 (reverse)

seq1  CCCCCCCCCCCCAGCC-TTGCCCCTTTGCTCCTGAGGCTG-AACTTAGTC  48
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CCCCCCCCCCCCAGCCTTTGCCCCTTTGCTCCTGAGGCTGAAACTTAGTC  50

seq1  CTGCTGGTTGGCCACCCACTTTAGTTCTTGTAACTCTTTGTCCTAGCCTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTTGGCCACCCACTTTAGTTCTTGTAACTCTTTGTCCTAGCCTA  100

seq1  CCGTGGTGTATGAGGACCTGGAGAGCATTATGATCATCCCAGAGGAATCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGTGTATGAGGACCTGGAGAGCATTATGATCATCCCAGAGGAATCC  150

seq1  AGGCTCACTCAGGAAACAGATGAAGACTCGCAAGTCAAAGCAGAGGGACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTCAGGAAACAGATGAAGACTCGCAAGTCAAAGCAGAGGGACA  200

seq1  TTCAAAAGAAAGCAAGGGTCAGCCAGCAAGCAGAGGTCACTCAGGAGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAAAGCAAGGGTCAGCCAGCAAGCAGAGGTCACTCAGGAGAAA  250

seq1  CCAGGGGCTACCCAGGAGGAAGCAGGGGCTACCCAGGAGGAAGCAGGGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCTACCCAGGAGGAAGCAGGGGCTACCCAGGAGGAAGCAGGGGC  300

seq1  TACCCAGGAGGAAGTCCAACCTCTTGAGCAACCGAAGAGGGCTTCTGGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGAGGAAGTCCAACCTCTTGAGCAACCGAAGAGGGCTTCTGGCC  350

seq1  TGCACTACTCCTTTGACACTCCCATACCTTTGCATGAAGCCACCTCATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTACTCCTTTGACACTCCCATACCTTTGCATGAAGCCACCTCATCC  400

seq1  CCAGAAAATTCCACAGGAATGCTCCACCAGTCAGCCCCTCTTTAAGCCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATTCCACAGGAATGCTCCACCAGTCAGCCCCTCTTTAAGCCCC  450

seq1  AGCAATAAAGATCACCACTGAATTGCAGAGCCAAGCATCCACGGGCCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAGATCACCACTGAATTGCAGAGCCAAGCATCCACGGGCCTTG  500

seq1  GGTGAGGTGGACATCCAGTGGATCTGAGAACTAGGTCTCTGGACCTTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGTGGACATCCAGTGGATCTGAGAACTAGGTCTCTGGACCTTCCT  550

seq1  AACTCATAGTTCTGCCTTCAGACTCAATCAAGAATCTCTGATAAGTTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATAGTTCTGCCTTCAGACTCAATCAAGAATCTCTGATAAGTTCTG  600

seq1  GGACGGGACAGGAAGGGGCTGTCCTCTCACCCTTGAGGGTGAAGGCTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGACAGGAAGGGGCTGTCCTCTCACCCTTGAGGGTGAAGGCTGTA  650

seq1  ATTTCAGAGTACAGACTAAGGTTGCGAAGAACCTCTTTTGTAGGTCGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGTACAGACTAAGGTTGCGAAGAACCTCTTTTGTAGGTCGTGG  700

seq1  GGTGTGAAGCAGGAAGGTGGTAGGAATTC  727
      |||||||||||||||||||||||||||||
seq2  GGTGTGAAGCAGGAAGGTGGTAGGAATTC  729