BAC Information

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BAC

Clone NameB6Ng01-198H12
Chromosome19 (Build37)
Map Location 40,843,392 - 40,988,670
singlet/doubletdoublet
Overlap geneEG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518
Upstream geneCyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720
Downstream geneBlnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198H12.bB6Ng01-198H12.g
ACCGA020060GA020061
length1,0891,150
definitionB6Ng01-198H12.b B6Ng01-198H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,843,392 - 40,843,927)(40,987,534 - 40,988,670)
sequence
gaattccttactttatacaactatagattaggctgcaaatagagctttgt
aaaaaccttcatgtgtcataggctaattgcgctagaaatagaaagcagac
tttggacaaatttataaccaaagaaaacattccttctaggttagatgtga
gatcattgtctgctaactaaaggtcataaactagtaatggacaatttatt
ctagcttcaaggacagaaaacaaaatattgactggttatctgtacaatat
gtcaaaactaatgatacacaaggcagatgatttgtctcttgacaaaacgg
tggtaacttgtaaacatacaaattattgctttaaacttataatgaactta
taaggggactttgtaacagatactgaatgtttagtcagataccagtctta
atagaaagatatgtaagtaagtcacttgtaactcctaaaaccttaccaat
ctatgacataaactattgccttaagtttactgtgaatttattggaatgta
caaatatttagagaatcatgcaatcaattctgctctaacggttctacctg
atagctgtttgagatcatttttagagaaaatataaaaactaagaactgta
ataaaatgacggtgcagctttcttcagcttcatccagtatgtgtatatgt
gtctctctcctccccccgcctctttcccccccctctttcttttctctctg
gttcatgaagagttaatgaactctgagccttttacctggccagtgagagg
ctcttgagccagaaagaaaagagcctagtaacttaactttttctcttaat
cccttgctataagcaggagttaattgccagaaaccagcagcttttagcca
cactatagcaagatagagtcaaaattccagaggccatcagcttctgggcc
cccggaacagtgaagaagagttataaaggcagagatcatatgccctttgg
tctttgtcagatgctgtgtcccatctcagcagtacttggccgccagggct
ggctcttcagcaaaggctgagacatgggtcttggtcgaaatttctgttaa
ataacatagtatcacagacagtgttaagccatcagagtt
gaattcagatcatttgcaggcacattaacacctacactggcagaaggaac
tgggatgtcgtcttgcatttggaagtcttttgaagattttatcactactt
cttcagactttttaagtgtttggtcacaatcgaatggaaggtttttactt
ggaatgttattagaatcttcctttatatcagattttggttttaatgtatc
ttgaagcaactgatttacttcaggtgtcaaaaattctgaagcctgctcac
tctggagagagaaaacagatgtaattcgaggcatcataggggagccggca
ctgggtatgtcattccatttaggttcttcagtcacattcaataaattttg
gttttcattagtgaacaggctctgttcattaaagttttgtgtttcttcta
aattgtatggttcttcaatttcagtttttatttttaaagttccatttaaa
gggttgatggacgcaaacaggttatctgagttagagctctcttttctcag
tagtggtgaagctgtatcgctatcactagttgattgctgagtaactgttt
tatttggagattccttctgaaggttttcacacagtgttgctcttgaaaac
ctacggcgtttattatttacctttgaataattatgaaaaggtaatgatcc
ttggttagagaactcaaaagagttggaggattcagcaggtaactcagagt
tgacataattaatgcaatagttatgcatatctccagaactgtatgcattg
ggcttaggagtaaggctgactttatctggactactgatggaggtatctga
tgcatctggatgactctgagggcttatcatttttcccacaagtcaacatt
atcttcttgcttcaacttttgtagtcacacgcactgatgtagttgatgtt
tgttggcaatgaagattaaacttttactgtcgtctaccatctgaagcgta
ttatttcttttcagattattgaaagctgctttccttttcagaaattactt
cctgggcaggcacagggatgaacattgcaggtggagcctgctttcacaaa
attcttgtgtcattccacctttggttgttaattcagttgcaatccagtgg
ttgtcacatgctggggtgaacaaattaacctgaccattcttttctggttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40843392_40843927
seq2: B6Ng01-198H12.b_591_1129

seq1  ATAGCTGTTTGAGATCATTTTTAGAGAAAATATAAAAACTAAGAACTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTTTGAGATCATTTTTAGAGAAAATATAAAAACTAAGAACTGTA  50

seq1  ATAAAATGACGGTGCAGCTTTCTTCAGCTTCATCCAGTATGTGTATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGACGGTGCAGCTTTCTTCAGCTTCATCCAGTATGTGTATATGT  100

seq1  GTCTCTCTCCTCCCCCCGCCTCTTTCCCCCCCCTCTTTCTTTTCTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCCTCCCCCCGCCTCTTTCCCCCCCCTCTTTCTTTTCTCTCTG  150

seq1  GTTCATGAAGAGTTAATGAACTCTGAGCCTTTTACCTGGCCAGTGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAAGAGTTAATGAACTCTGAGCCTTTTACCTGGCCAGTGAGAGG  200

seq1  CTCTTGAGCCAGAAAGAAAAGAGCCTAGTAACTTAACTTTTTCTCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGCCAGAAAGAAAAGAGCCTAGTAACTTAACTTTTTCTCTTAAT  250

seq1  CCCTTGCTATAAGCAGGAGTTAATTGCCAGAAACCAGCAGCTTTTAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTATAAGCAGGAGTTAATTGCCAGAAACCAGCAGCTTTTAGCCA  300

seq1  CACTATAGCAAGATAGAGTCAAAATTCCAGAGGCCATCAGCTTCT-GGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTATAGCAAGATAGAGTCAAAATTCCAGAGGCCATCAGCTTCTGGGCC  350

seq1  CCCGGAACAGTGAAGAAGAGTTATAAAGGCAGAGATCATATG-CCTTTGG  398
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCGGAACAGTGAAGAAGAGTTATAAAGGCAGAGATCATATGCCCTTTGG  400

seq1  TCTTTGTCAGATGCTGTGTCCCATCTCAGCAGTACTTGGCCCGCCAGGGC  448
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTTGTCAGATGCTGTGTCCCATCTCAGCAGTACTTGG-CCGCCAGGGC  449

seq1  TGGCTCTTCAGC-AAGGCTGGAAGACAT-GGTCTTGGTCG-AATTTCTGT  495
      |||||||||||| |||||||  |||||| ||||||||||| |||||||| 
seq2  TGGCTCTTCAGCAAAGGCTG--AGACATGGGTCTTGGTCGAAATTTCTG-  496

seq1  TTAAATAACATAGTATCACAGACAGTG-TAAG-CATCAGAGTT  536
      ||||||||||||||||||||||||||| |||| ||||||||||
seq2  TTAAATAACATAGTATCACAGACAGTGTTAAGCCATCAGAGTT  539

seq1: chr19_40987534_40988670
seq2: B6Ng01-198H12.g_65_1214 (reverse)

seq1  AAACACAGAAAAGAATAGTACAGCTAATTTG-TCACCCCAGGCTGTGGCC  49
      |||| ||||||||||| ||   | ||||||| |||||||||  |||| | 
seq2  AAAC-CAGAAAAGAATGGTCAGGTTAATTTGTTCACCCCAGCATGTGACA  49

seq1  AACACTGGGTTTGCAACTGGATTAACAACCAAAG--TGAATGACACA--G  95
      | |||| || ||||||||| ||||||||||||||   ||||||||||   
seq2  ACCACT-GGATTGCAACTGAATTAACAACCAAAGGTGGAATGACACAAGA  98

seq1  ATTTTGTGAAAGCA-GCTCCACCTGC-ATGTTCATCCCCTGTGCTTGCCA  143
      |||||||||||||| ||||||||||| |||||||| |||||||| |||| 
seq2  ATTTTGTGAAAGCAGGCTCCACCTGCAATGTTCAT-CCCTGTGCCTGCCC  147

seq1  GGAAAGTAATTTCTGAAAAGG-AAGCAGCTTTCA--TATCTGAAAAG-AA  189
       | |||||||||||||||||| ||||||||||||   |||||||||| ||
seq2  AGGAAGTAATTTCTGAAAAGGAAAGCAGCTTTCAATAATCTGAAAAGAAA  197

seq1  TAATACGCTTCAGATGGTAGACGACAGTAAAAGTTT-ATCTTCATTGCCA  238
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATACGCTTCAGATGGTAGACGACAGTAAAAGTTTAATCTTCATTGCCA  247

seq1  AC-AACATCAACTACATCAGTGCGTGTGACTACAAAAGTTGAAGCAAG-A  286
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAAACATCAACTACATCAGTGCGTGTGACTACAAAAGTTGAAGCAAGAA  297

seq1  GATAATGTTGACTTGTGGG-AAAATGAT-AGCCCTCAGAGTCATCCAGAT  334
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GATAATGTTGACTTGTGGGAAAAATGATAAGCCCTCAGAGTCATCCAGAT  347

seq1  GCATCAGATACCTCCATCAGTAGTCCAGATAAAGTCAGCCTTACTCCTAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGATACCTCCATCAGTAGTCCAGATAAAGTCAGCCTTACTCCTAA  397

seq1  GCCCAATGCATACAGTTCTGGAGATATGCATAACTATTGCATTAATTATG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGCATACAGTTCTGGAGATATGCATAACTATTGCATTAATTATG  447

seq1  TCAACTCTGAGTTACCTGCTGAATCCTCCAACTCTTTTGAGTTCTCTAAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTGAGTTACCTGCTGAATCCTCCAACTCTTTTGAGTTCTCTAAC  497

seq1  CAAGGATCATTACCTTTTCATAATTATTCAAAGGTAAATAATAAACGCCG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCATTACCTTTTCATAATTATTCAAAGGTAAATAATAAACGCCG  547

seq1  TAGGTTTTCAAGAGCAACACTGTGTGAAAACCTTCAGAAGGAATCTCCAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTCAAGAGCAACACTGTGTGAAAACCTTCAGAAGGAATCTCCAA  597

seq1  ATAAAACAGTTACTCAGCAATCAACTAGTGATAGCGATACAGCTTCACCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGTTACTCAGCAATCAACTAGTGATAGCGATACAGCTTCACCA  647

seq1  CTACTGAGAAAAGAGAGCTCTAACTCAGATAACCTGTTTGCGTCCATCAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAGAAAAGAGAGCTCTAACTCAGATAACCTGTTTGCGTCCATCAA  697

seq1  CCCTTTAAATGGAACTTTAAAAATAAAAACTGAAATTGAAGAACCATACA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAATGGAACTTTAAAAATAAAAACTGAAATTGAAGAACCATACA  747

seq1  ATTTAGAAGAAACACAAAACTTTAATGAACAGAGCCTGTTCACTAATGAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAGAAACACAAAACTTTAATGAACAGAGCCTGTTCACTAATGAA  797

seq1  AACCAAAATTTATTGAATGTGACTGAAGAACCTAAATGGAATGACATACC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAATTTATTGAATGTGACTGAAGAACCTAAATGGAATGACATACC  847

seq1  CAGTGCCGGCTCCCCTATGATGCCTCGAATTACATCTGTTTTCTCTCTCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCGGCTCCCCTATGATGCCTCGAATTACATCTGTTTTCTCTCTCC  897

seq1  AGAGTGAGCAGGCTTCAGAATTTTTGACACCTGAAGTAAATCAGTTGCTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCAGGCTTCAGAATTTTTGACACCTGAAGTAAATCAGTTGCTT  947

seq1  CAAGATACATTAAAACCAAAATCTGATATAAAGGAAGATTCTAATAACAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACATTAAAACCAAAATCTGATATAAAGGAAGATTCTAATAACAT  997

seq1  TCCAAGTAAAAACCTTCCATTCGATTGTGACCAAACACTTAAAAAGTCTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAAAAACCTTCCATTCGATTGTGACCAAACACTTAAAAAGTCTG  1047

seq1  AAGAAGTAGTGATAAAATCTTCAAAAGACTTCCAAATGCAAGACGACATC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAGTGATAAAATCTTCAAAAGACTTCCAAATGCAAGACGACATC  1097

seq1  CCAGTTCCTTCTGCCAGTGTAGGTGTTAATGTGCCTGCAAATGATCTGAA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCTTCTGCCAGTGTAGGTGTTAATGTGCCTGCAAATGATCTGAA  1147

seq1  TTC  1137
      |||
seq2  TTC  1150