BAC Information

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BAC

Clone NameB6Ng01-199G18
Chromosome19 (Build37)
Map Location 43,318,135 - 43,319,272
singlet/doubletsinglet
Overlap geneLOC545291
Upstream gene4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199G18.bB6Ng01-199G18.g
ACCGA020760GA020761
length1,1571,146
definitionB6Ng01-199G18.b B6Ng01-199G18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccctgtgagtattgcttatttgaaaaaaagataaatttattgct
gattatttttacttcagaagatatagtagtagtttgtaatcttggtttgg
cagagactatccagatatgcattctgttaggaccttggggttgaatattt
actaccctgccaaagctacaatctttagtggcatatacactgttgctgaa
aagtctgttttgtccaaaacagtttttttcttctagagaaagattttcca
aaaccctttccccagctgtctgcctgtgtttgttcagtttctgccttgtg
tttgtggtttgctgtgacttctcattttactagttcagtcattttctatg
attacttggagctgaatggaggtaaagtgagagaaatattattccagata
atgaaaagaactggaaattaggatgcttatattactctcaactttagtgc
tcatcaagagcagacatcccttggatgaagagacgatgtgatctcagagg
tctcaggaagtcattcttcacgctgtcgtcttcccacctggctctgtctg
gttagtgcccactcattcctaagccttggcttgagtatttctcttagagt
tctgtgagtgctatactcgctttcacttcctctcctttagcacctgtctt
aactctatgtctagtttctcatcctgttgctttaacagactgataatcct
gactagtgaaacttaagtgagaaaaaatttatttggctctgaattctggg
ttacatgccatcattgtggggaagtcaaggcatcaggagttggactcaga
tagtcacgtcacatatgcaactaagaggagagggtaataaattagttcac
gagtgctaactgacaggtagcttgtctcactcttatacagttcaggattc
cagtgtagtgaatggtgctacgcatagtggatctgtcttcctaccttaaa
ttaagggttacctccaggattaatcccaacaacatataaaccccacaggt
ttgaccctgacctaagattcatcctcacttttggcgattctctttccagg
aaagtccttaggttgtatccaagtgaccatttcaaacttggatccacttt
ctactaaaacaatccacaatattttacctgcactgcctgccttgtatctg
atctata
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcgcaccagtcagaatggctaagatcaaaaactgaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaggtcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gtttatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcagcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttggaattgggga
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatatactagcaagattttatcgaat
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagttggatgctcacagtcagcttaatggatggatcacaggctccaa
tggagagctagagaaagtacccaggagctaaaggatctgcacctataggt
gacacatatgaaactaacagtacccggagctctgacttctagcctgcata
tgttatcaaggattgctattcggccattcactgaaagagagccattgacc
gctactttattgccagtacaggtactcaaggttccataagggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43318135_43319272
seq2: B6Ng01-199G18.b_44_1200 (reverse)

seq1  TATAGAACAGATAAACAAGCAGGCAGTGCA-GTAAAATATGGT-GATTGT  48
      |||||| |||||| | | |||||||||||| ||||||||| || ||||||
seq2  TATAGATCAGATACA-AGGCAGGCAGTGCAGGTAAAATATTGTGGATTGT  49

seq1  TTTAGTAGAAAGTGATGGTTAGTTTG-AATTGTCAACTTGATACAACCTA  97
      ||||||||||||||      |||||| ||| ||||  | |||||||||||
seq2  TTTAGTAGAAAGTGGATCCAAGTTTGAAATGGTCACTTGGATACAACCTA  99

seq1  --GAACTTCCTGGAAAGAGAATCGC--AAAGTGA-GATG-ATCTTA-GTC  140
        ||  |||||||||||||||||||  ||||||| |||| |||||| |||
seq2  AGGACTTTCCTGGAAAGAGAATCGCCAAAAGTGAGGATGAATCTTAGGTC  149

seq1  A-GGTC-AACCTGT-GGGTTTATATG-TGTT-GGATT-ATCCTG--AGTA  182
      | |||| ||||||| ||||||||||| |||| ||||| ||||||   |||
seq2  AGGGTCAAACCTGTGGGGTTTATATGTTGTTGGGATTAATCCTGGAGGTA  199

seq1  A-CCTTAATTT-AGGTAGGAAGACAGATCCACTATGCGTAGCACCATTCA  230
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAATTTAAGGTAGGAAGACAGATCCACTATGCGTAGCACCATTCA  249

seq1  CTACACTGGAATCCTGAACTGTATAAGAGTGAGACAAGCTACCTGTCAGT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGGAATCCTGAACTGTATAAGAGTGAGACAAGCTACCTGTCAGT  299

seq1  TAGCACTCGTGAACTAATTTATTACCCTCTCCTCTTAGTTGCATATGTGA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCGTGAACTAATTTATTACCCTCTCCTCTTAGTTGCATATGTGA  349

seq1  CGTGACTATCTGAGTCCAACTCCTGATGCCTTGACTTCCCCACAATGATG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTATCTGAGTCCAACTCCTGATGCCTTGACTTCCCCACAATGATG  399

seq1  GCATGTAACCCAGAATTCAGAGCCAAATAAATTTTTTCTCACTTAAGTTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAACCCAGAATTCAGAGCCAAATAAATTTTTTCTCACTTAAGTTT  449

seq1  CACTAGTCAGGATTATCAGTCTGTTAAAGCAACAGGATGAGAAACTAGAC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCAGGATTATCAGTCTGTTAAAGCAACAGGATGAGAAACTAGAC  499

seq1  ATAGAGTTAAGACAGGTGCTAAAGGAGAGGAAGTGAAAGCGAGTATAGCA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTAAGACAGGTGCTAAAGGAGAGGAAGTGAAAGCGAGTATAGCA  549

seq1  CTCACAGAACTCTAAGAGAAATACTCAAGCCAAGGCTTAGGAATGAGTGG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAACTCTAAGAGAAATACTCAAGCCAAGGCTTAGGAATGAGTGG  599

seq1  GCACTAACCAGACAGAGCCAGGTGGGAAGACGACAGCGTGAAGAATGACT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAACCAGACAGAGCCAGGTGGGAAGACGACAGCGTGAAGAATGACT  649

seq1  TCCTGAGACCTCTGAGATCACATCGTCTCTTCATCCAAGGGATGTCTGCT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGACCTCTGAGATCACATCGTCTCTTCATCCAAGGGATGTCTGCT  699

seq1  CTTGATGAGCACTAAAGTTGAGAGTAATATAAGCATCCTAATTTCCAGTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGAGCACTAAAGTTGAGAGTAATATAAGCATCCTAATTTCCAGTT  749

seq1  CTTTTCATTATCTGGAATAATATTTCTCTCACTTTACCTCCATTCAGCTC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTATCTGGAATAATATTTCTCTCACTTTACCTCCATTCAGCTC  799

seq1  CAAGTAATCATAGAAAATGACTGAACTAGTAAAATGAGAAGTCACAGCAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATCATAGAAAATGACTGAACTAGTAAAATGAGAAGTCACAGCAA  849

seq1  ACCACAAACACAAGGCAGAAACTGAACAAACACAGGCAGACAGCTGGGGA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACACAAGGCAGAAACTGAACAAACACAGGCAGACAGCTGGGGA  899

seq1  AAGGGTTTTGGAAAATCTTTCTCTAGAAGAAAAAAACTGTTTTGGACAAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTTGGAAAATCTTTCTCTAGAAGAAAAAAACTGTTTTGGACAAA  949

seq1  ACAGACTTTTCAGCAACAGTGTATATGCCACTAAAGATTGTAGCTTTGGC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTTTCAGCAACAGTGTATATGCCACTAAAGATTGTAGCTTTGGC  999

seq1  AGGGTAGTAAATATTCAACCCCAAGGTCCTAACAGAATGCATATCTGGAT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGTAAATATTCAACCCCAAGGTCCTAACAGAATGCATATCTGGAT  1049

seq1  AGTCTCTGCCAAACCAAGATTACAAACTACTACTATATCTTCTGAAGTAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCCAAACCAAGATTACAAACTACTACTATATCTTCTGAAGTAA  1099

seq1  AAATAATCAGCAATAAATTTATCTTTTTTTCAAATAAGCAATACTCACAG  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCAGCAATAAATTTATCTTTTTTTCAAATAAGCAATACTCACAG  1149

seq1  GGGAATTC  1138
      ||||||||
seq2  GGGAATTC  1157