BAC Information

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BAC

Clone NameB6Ng01-199G20
Chromosome19 (Build37)
Map Location 20,379,348 - 20,515,629
singlet/doubletdoublet
Overlap geneAnxa1, LOC100041560, 1500015L24Rik
Upstream geneLOC100042218, LOC100041541
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199G20.bB6Ng01-199G20.g
ACCGA020764GA020765
length1,1691,162
definitionB6Ng01-199G20.b B6Ng01-199G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,514,457 - 20,515,629)(20,379,348 - 20,380,506)
sequence
gaattctttataaatagaaaaataatcttgaaacacatttggaagtgtag
aagttacccaataggcaaagcaagcctgagcaaaatgaataatgttggta
acatcaccatctctgattcaccttatattactaagccatcaaaacaaaac
agcatggaactggcacaaaaacagacaaatcaatctaaaaggaacagact
agaatatacagatataagcccaataagctaaagtcattttacttcaaaga
aaattgccaaaaatacacattgcagaaaggacagcccctttaacaaatga
cacatagaaatttgtatattcatattgggatgaatgcagctagagcctta
gctctcagattacacaacgattataaatgcttggagaaggatggcagcag
agaatcttgccagtttcagggactttctgaagttattcagttgtttattt
cctgagtttaagaagcctttttaaagaatggagtgtttgagctcttcttc
cagcatttcattgttttacatcctgcatcttaaagcacttcccttcaggt
tgaaatgtttcatctcctctttcagcatcctgtcttttaacaagcttctc
tctaagatggaaattattagacaacaaataggtgttttaaatgggttaca
taggctttctaatttttttaccacagctaaaaacaaaccaatgttataat
gtttggaataaagtggatacaagagaagatattcatatcaagtgataaaa
ataacatgtgcctttttatttgtggttcctagactttatatagttatatc
aaatcatatatgtacacattgcttggaaatagaagcagaatttgactagg
gaaacacaaggagggtcccagtgttggaggtgggagacatttaaaaaaaa
aaagctaggtctatgtacaagaccaaagtacattatttacttgtgtgaaa
tatctttatgtagccagttctgtgttcaatgatatatagccatgggaaaa
aaaactaaattaaaacatacataaatatagtgtatactatataaatatgt
gctagtcacaggaataaaagaaatattttactaatagtttaagggtaaat
attttgtagaaggtggcttttgattaagattacatgaaactatattgaag
gtaatctcaaatcttcctg

gaattctcactgcagtcctccaataacatctttatcccaggcatttggct
ataatgttacagaacctattggcacaaggtccaaacagcttctagacctc
gagttttgtcacttgatttctagcactaaactttaggtcatttagcactg
gcttcagaactatgtgtataattttcaagtattttcttggactcaagttc
tttgtcttttaagctaagatagcagtttctgaccaacactaacctatttt
cctttcattctcatttttcttttctattactaccctgtaacactacgtca
ctttcattaaacgcagcttcagttgggtaaaaacatcaatgtgacatgca
tcgttgcaataatacacatcatcattaatcatctgataggcaatgtttga
ggaacacggggatagaacacatccattttattttttttcttcaaggacta
gctgagaaactagtaggaaaatagtacagaaaacagatgttgtgctcatg
gaatattcagctatggctcaagtaccaggaaaagtacgcaggaaaataat
tgccagtggtcaaccactgtaatgtcaagattaaatgagacatgcaggaa
gtagaaataaacaagtatgtaggatgagaagaggattagctaccatcttt
ctgccagctttaattcaacactttcttatgagtgtagtcaaaacatgaag
ctaataacattaaattataaagaattgattagtgtatcttaactgcaaga
tgattaacataatgtctataaatatttagaatatgcatgtaagctttagg
tccatgcagctttattgattatcctttggtaagcattgtgttttatatgg
aaaggttatttgagacatttaccagcgtatactaggttttacacatgcag
aatcaaccatttgtccattctgaatgctaactggaatgaagtagaattgc
ttatacatgttgtgcaaattttctatattctggtattacacagctttgta
tttagaggaaaatttgaaataataaattatgcagtgattaaagcaagaga
atgtagatttcaaattatagtattgcttaggattttgtagagagttaaat
gaataaaataacaacttaatttataatcatgtttgtactatggcaatatt
cttcaaaggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20514457_20515629
seq2: B6Ng01-199G20.b_46_1214 (reverse)

seq1  CAGGAAGATTGGGGAATACC-TCATTAATAATTTCATGGTAATCTTAATC  49
      |||||||||| | || |||| ||| | ||| |||||| ||||||||||||
seq2  CAGGAAGATTTGAGATTACCTTCAAT-ATAGTTTCAT-GTAATCTTAATC  48

seq1  AAAA-CCACCTTCTAC-AAATATTTACCCCTAAACTATTTTAAGTAAAAT  97
      |||| ||||||||||| |||||||||||| |||||||||   ||||||||
seq2  AAAAGCCACCTTCTACAAAATATTTACCCTTAAACTATT---AGTAAAAT  95

seq1  A-TTCTTTTATTCCTGTGACTAGCAACATATTTTATATAGTATACACTTA  146
      | |||||||||||||||||||||| ||||| |||||||||||||||| ||
seq2  ATTTCTTTTATTCCTGTGACTAGC-ACATA-TTTATATAGTATACAC-TA  142

seq1  TATTTTATGTATGTTTTAATTTAGTTTTTTTT-CCATGGCTATATATTCA  195
      || ||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TA-TTTATGTATGTTTTAATTTAGTTTTTTTTCCCATGGCTATATA-TCA  190

seq1  TTGAACACAGAACTGGGCTACATAAAGATATTTCACACAAGTAAATAATG  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGAACACAGAACT-GGCTACATAAAGATATTTCACACAAGTAAATAATG  239

seq1  TACTTTGGTCTTGTACATAGACCTAGC-TTTTTTTTTTAAATGTCTCCCA  294
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTTTGGTCTTGTACATAGACCTAGCTTTTTTTTTTTAAATGTCTCCCA  289

seq1  CCTCCAACACTGGGACCCTCCTTGTGTTTCCCTAGTC-AATTCTGCTTCT  343
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTCCAACACTGGGACCCTCCTTGTGTTTCCCTAGTCAAATTCTGCTTCT  339

seq1  ATTTCCAAGCAATGTGTACATATATGATTTGATATAACTATATAAAGTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGCAATGTGTACATATATGATTTGATATAACTATATAAAGTCT  389

seq1  AGGAACCACAAATAAAAAGGCACATGTTATTTTTATCACTTGATATGAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCACAAATAAAAAGGCACATGTTATTTTTATCACTTGATATGAAT  439

seq1  ATCTTCTCTTGTATCCACTTTATTCCAAACATTATAACATTGGTTTGTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCTTGTATCCACTTTATTCCAAACATTATAACATTGGTTTGTTT  489

seq1  TTAGCTGTGGTAAAAAAATTAGAAAGCCTATGTAACCCATTTAAAACACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTGGTAAAAAAATTAGAAAGCCTATGTAACCCATTTAAAACACC  539

seq1  TATTTGTTGTCTAATAATTTCCATCTTAGAGAGAAGCTTGTTAAAAGACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGTCTAATAATTTCCATCTTAGAGAGAAGCTTGTTAAAAGACA  589

seq1  GGATGCTGAAAGAGGAGATGAAACATTTCAACCTGAAGGGAAGTGCTTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGAAAGAGGAGATGAAACATTTCAACCTGAAGGGAAGTGCTTTA  639

seq1  AGATGCAGGATGTAAAACAATGAAATGCTGGAAGAAGAGCTCAAACACTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGGATGTAAAACAATGAAATGCTGGAAGAAGAGCTCAAACACTC  689

seq1  CATTCTTTAAAAAGGCTTCTTAAACTCAGGAAATAAACAACTGAATAACT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAAAAAGGCTTCTTAAACTCAGGAAATAAACAACTGAATAACT  739

seq1  TCAGAAAGTCCCTGAAACTGGCAAGATTCTCTGCTGCCATCCTTCTCCAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGTCCCTGAAACTGGCAAGATTCTCTGCTGCCATCCTTCTCCAA  789

seq1  GCATTTATAATCGTTGTGTAATCTGAGAGCTAAGGCTCTAGCTGCATTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATAATCGTTGTGTAATCTGAGAGCTAAGGCTCTAGCTGCATTCA  839

seq1  TCCCAATATGAATATACAAATTTCTATGTGTCATTTGTTAAAGGGGCTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATATGAATATACAAATTTCTATGTGTCATTTGTTAAAGGGGCTGT  889

seq1  CCTTTCTGCAATGTGTATTTTTGGCAATTTTCTTTGAAGTAAAATGACTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGCAATGTGTATTTTTGGCAATTTTCTTTGAAGTAAAATGACTT  939

seq1  TAGCTTATTGGGCTTATATCTGTATATTCTAGTCTGTTCCTTTTAGATTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTGGGCTTATATCTGTATATTCTAGTCTGTTCCTTTTAGATTG  989

seq1  ATTTGTCTGTTTTTGTGCCAGTTCCATGCTGTTTTGTTTTGATGGCTTAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTGTTTTTGTGCCAGTTCCATGCTGTTTTGTTTTGATGGCTTAG  1039

seq1  TAATATAAGGTGAATCAGAGATGGTGATGTTACCAACATTATTCATTTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAGGTGAATCAGAGATGGTGATGTTACCAACATTATTCATTTTG  1089

seq1  CTCAGGCTTGCTTTGCCTATTGGGTAACTTCTACACTTCCAAATGTGTTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTGCTTTGCCTATTGGGTAACTTCTACACTTCCAAATGTGTTT  1139

seq1  CAAGATTATTTTTCTATTTATAAAGAATTC  1173
      ||||||||||||||||||||||||||||||
seq2  CAAGATTATTTTTCTATTTATAAAGAATTC  1169


seq1: chr19_20379348_20380506
seq2: B6Ng01-199G20.g_63_1224

seq1  GAATTCTCACTGCAGTCCTCCAATAACATCTTTATCCCAGGCATTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGCAGTCCTCCAATAACATCTTTATCCCAGGCATTTGGCT  50

seq1  ATAATGTTACAGAACCTATTGGCACAAGGTCCAAACAGCTTCTAGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTACAGAACCTATTGGCACAAGGTCCAAACAGCTTCTAGACCTC  100

seq1  GAGTTTTGTCACTTGATTTCTAGCACTAAACTTTAGGTCATTTAGCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGTCACTTGATTTCTAGCACTAAACTTTAGGTCATTTAGCACTG  150

seq1  GCTTCAGAACTATGTGTATAATTTTCAAGTATTTTCTTGGACTCAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAACTATGTGTATAATTTTCAAGTATTTTCTTGGACTCAAGTTC  200

seq1  TTTGTCTTTTAAGCTAAGATAGCAGTTTCTGACCAACACTAACCTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTAAGCTAAGATAGCAGTTTCTGACCAACACTAACCTATTTT  250

seq1  CCTTTCATTCTCATTTTTCTTTTCTATTACTACCCTGTAACACTACGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATTCTCATTTTTCTTTTCTATTACTACCCTGTAACACTACGTCA  300

seq1  CTTTCATTAAACGCAGCTTCAGTTGGGTAAAAACATCAATGTGACATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTAAACGCAGCTTCAGTTGGGTAAAAACATCAATGTGACATGCA  350

seq1  TCGTTGCAATAATACACATCATCATTAATCATCTGATAGGCAATGTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGCAATAATACACATCATCATTAATCATCTGATAGGCAATGTTTGA  400

seq1  GGAACACGGGGATAGAACACATCCATTTTATTTTTTTTCTTCAAGGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACGGGGATAGAACACATCCATTTTATTTTTTTTCTTCAAGGACTA  450

seq1  GCTGAGAAACTAGTAGGAAAATAGTACAGAAAACAGATGTTGTGCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAACTAGTAGGAAAATAGTACAGAAAACAGATGTTGTGCTCATG  500

seq1  GAATATTCAGCTATGGCTCAAGTACCAGGAAAAGTACGCAGGAAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCAGCTATGGCTCAAGTACCAGGAAAAGTACGCAGGAAAATAAT  550

seq1  TGCCAGTGGTCAACCACTGTAATGTCAAGATTAAATGAGACATGCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGTCAACCACTGTAATGTCAAGATTAAATGAGACATGCAGGAA  600

seq1  GTAGAAATAAACAAGTATGTAGGATGAGAAGAGGATTAGCTACCATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATAAACAAGTATGTAGGATGAGAAGAGGATTAGCTACCATCTTT  650

seq1  CTGCCAGCTTTAATTCAACACTTTCTTATGAGTGTAGTCAAAACATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCTTTAATTCAACACTTTCTTATGAGTGTAGTCAAAACATGAAG  700

seq1  CTAATAACATTAAATTATAAAGAATTGATTAGTGTATCTTAACTGCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACATTAAATTATAAAGAATTGATTAGTGTATCTTAACTGCAAGA  750

seq1  TGATTAACATAATGTCTATAAATATTTAGAATATGCATGTAAGCTTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACATAATGTCTATAAATATTTAGAATATGCATGTAAGCTTTAGG  800

seq1  TCCATGCAGCTTTATTGATTATCCTTTGGTAAGCATTGTGTTTTATATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAGCTTTATTGATTATCCTTTGGTAAGCATTGTGTTTTATATGG  850

seq1  -AAGGTTATTTGAGACATTTACCAGCGTATACTAGGTTTTTACACATGCA  899
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGGTTATTTGAGACATTTACCAGCGTATACTAGG-TTTTACACATGCA  899

seq1  GAATCAACCATTTGTCCATTCTGAATGCTAACTGGAATGAAGTAGAATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACCATTTGTCCATTCTGAATGCTAACTGGAATGAAGTAGAATTG  949

seq1  CTTATACATGTTGTGCAAATTTTCTATTATTCTGGTATTACACAGCTTTG  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTATACATGTTGTGCAAATTTTCTA-TATTCTGGTATTACACAGCTTTG  998

seq1  TATTTAGAGGGAAAATTTGAAATAATAAAATTATGCAGGTGATAAAAGCA  1049
      |||||||| ||||||||||||||||| |||||||||| ||||| ||||||
seq2  TATTTAGA-GGAAAATTTGAAATAAT-AAATTATGCA-GTGATTAAAGCA  1045

seq1  AGAGAATGTAGATTTCAAA-TATAGTATTGCTTAGGATTTGTAAGAGAAG  1098
      ||||||||||||||||||| ||||||||||||||||||||   |||||  
seq2  AGAGAATGTAGATTTCAAATTATAGTATTGCTTAGGATTTTGTAGAGAGT  1095

seq1  TAAATGATTAAAATA--CACT--ATTATAAATCATGTTTGTACTATGCAA  1144
      ||||||| |||||||   |||  |||   ||||||||||||||||||  |
seq2  TAAATGAATAAAATAACAACTTAATTTATAATCATGTTTGTACTATGGCA  1145

seq1  ATA-TCTTC-AAGGTGA  1159
      ||| ||||| |||||||
seq2  ATATTCTTCAAAGGTGA  1162


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