BAC Information

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BAC

Clone NameB6Ng01-199P11
Chromosome19 (Build37)
Map Location 8,688,943 - 8,690,007
singlet/doubletsinglet
Overlap genenone
Upstream geneHrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8
Downstream geneSlc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199P11.bB6Ng01-199P11.g
ACCGA021157GA021158
length1,0821,214
definitionB6Ng01-199P11.b B6Ng01-199P11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccaacagtttttggattgtgagccctgcgttattcacaatca
gaggcagtgttgaacactaatcagatgtttctgttggatccgattggttg
gatcacagactaaggaggttgagggcaggctgctactctatggctttgat
ttgtaaggtgcatctggtgttaaacactgaaccttggagttggtcctctt
tccatactctcatactgtgtgacaggagcaagttattaaactcctgtcta
cctctttcaagctcaggatgattttcatgtcctcttaattttgttcttgg
agggctaagtgagccaacacaagtaaagagtttaaggaagcctttgtcca
actatacaagtttgtgcctgtagtcccaacccctggggagcctcaggcag
aaggattgagcccaagtatgggcaggagggtcaatactccaagcttagtt
ttggctacagagtgagtttgatggcaccctggacttgatgatactctggg
ttaaagaatctcttacaaggaaagaaagctatatactatgcttatgcaga
ctgcagttttatgcattaaactgggatggtgtttttttgtccacttagat
cctcagacacatgaggtgttagactagaattttaatttcaaagtgagctt
cctcctctttttcttccaacagggtctcattatacgtcctaggctggctt
caaactcccgactctcggatctcagcctcccatgtgctggtattataggc
ctggagctactactacatgtggccaaagagctgaactctttgtggctttt
agggatgttttgctgccagctaaatgggttttggaggtaagctaactttt
gtatgtagagaagagacccagagggaggcttgtaatccatcccagcctcc
cccttcccagcatgtgttgattctagcttggggctccatgggtgtccaga
tgcctggatacattcttcaggccaaaggtatattaggaccctgtggccct
ggggaaggcgaggacagcttggaccaaacagcttataaggtttgttgggg
tccagtccctgcgagacttagtgcttcttcta
gaattcctacagctgataaacaacatcaacaaagtgtctggatacaaaat
taactcaaacaaatcagttgcctccctctactcaaaggataaaagggatg
agaaagaaattatggaaacaacgcctttcacaatagtcacaaatgatata
aaatacctaggtgtgactctaaccaaacaagtgaaagaacaaatggtgct
ggttcaactggtggttagtatgtagaaaaatgcaaattgatccattctta
tctccctatacaaagctcaagtccaagtggatcagggacctccaaataaa
accagatatactgaatctaatagaagagaaagtggggaagagcatcaaac
acatgggcaaagagaaaactttcctgaacagaataccaatggcttatgct
ctaagatcaacaattgacaaatgggacctcataaaattgaaatgcttctg
taaggcactgtcatcatgacaaaatggcagccaacatattgggaaaatat
ctttaccaatcctatagatagagggctaatatccaatatatacaaagaac
tcaagatgttggactccagagaaccaaataaccctatttaaaaatggggt
acagagctaaacaaggaattctcaactgagaaatattgaatgatggagaa
gcaactaaagaactgttccacagaactgttcttagtcaacggggagatgc
aaatcaaaacaatcctgagattccacctcacaacagtcagaatggctaag
acgaaaaactcaggtaacagcagatgctggtgaggatgtagagaaagagg
aacactcacccattgttggtggtatttcaaactgggtacaaccactctgg
aaatcagtctggtaggttcctcagaaaaatagacataatactatctgaag
acccagctataccactcctgggcatacaacccaaaaagaatgttccaaca
ttataacaaaaaacattatgctctactatgttcatagcagtctttaactt
ataaatattccagaagctgggaaaccacccagatatttccctcaacagga
ttgaattgtataactagaaaatgtgggttaccatttataacaatgcagtc
atctacctccagctatttagaaacaattactttatggaagttcctaagca
tgtcacgaacctagaaattatctcttgaagttgaataggtgtaaggtaac
tctcacagacttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8688943_8690007
seq2: B6Ng01-199P11.b_40_1121 (reverse)

seq1  TAGAAG-AGCACTAAGTCTCGGCAGGGAACTGACCCC-ACAA--CCTCTA  46
      |||||| ||||||||||||| |||||||   |||||| ||||  | | ||
seq2  TAGAAGAAGCACTAAGTCTC-GCAGGGACTGGACCCCAACAAACCTTATA  49

seq1  AGCTGTTT-GTCC-AGCTGTCCTCGCC-TCCCCA-GGCCACA-GGTTCTT  91
      |||||||| |||| ||||||||||||| |||||| ||||||| ||| || 
seq2  AGCTGTTTGGTCCAAGCTGTCCTCGCCTTCCCCAGGGCCACAGGGTCCTA  99

seq1  ATATACC-TTGGCCTGGAGAATGTAT-CAGGCATCTGGACACCCATGGAG  139
      ||||||| |||||||| ||||||||| |||||||||||||||||||||||
seq2  ATATACCTTTGGCCTGAAGAATGTATCCAGGCATCTGGACACCCATGGAG  149

seq1  -CCCAAGCTAGAATCAACACATGCTGGG-AGGGGGAGGCTGGGATGGATT  187
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCAAGCTAGAATCAACACATGCTGGGAAGGGGGAGGCTGGGATGGATT  199

seq1  AC-AGCCT-CCTCTGGGTCTCTTCTCTACATAC-AAAGTTAGCTTACCTC  234
      || ||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  ACAAGCCTCCCTCTGGGTCTCTTCTCTACATACAAAAGTTAGCTTACCTC  249

seq1  CAAAACCCATTTAGCTTGGCAGC-AAACATCCCT-AAAGCCACAAAGAGT  282
      ||||||||||||||| ||||||| |||||||||| |||||||||||||||
seq2  CAAAACCCATTTAGC-TGGCAGCAAAACATCCCTAAAAGCCACAAAGAGT  298

seq1  TCAGCTCTTTGGCCACATGTAGTAGTAGCTCCAGGCCTATAATACCAGCA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTTTGGCCACATGTAGTAGTAGCTCCAGGCCTATAATACCAGCA  348

seq1  CATGGGAGGCTGAGATCCGAGAGTCGGGAGTTTGAAGCCAGCCTAGGACG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGCTGAGATCCGAGAGTCGGGAGTTTGAAGCCAGCCTAGGACG  398

seq1  TATAATGAGACCCTGTTGGAAGAAAAAGAGGAGGAAGCTCACTTTGAAAT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGACCCTGTTGGAAGAAAAAGAGGAGGAAGCTCACTTTGAAAT  448

seq1  TAAAATTCTAGTCTAACACCTCATGTGTCTGAGGATCTAAGTGGACAAAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTAGTCTAACACCTCATGTGTCTGAGGATCTAAGTGGACAAAA  498

seq1  AAACACCATCCCAGTTTAATGCATAAAACTGCAGTCTGCATAAGCATAGT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATCCCAGTTTAATGCATAAAACTGCAGTCTGCATAAGCATAGT  548

seq1  ATATAGCTTTCTTTCCTTGTAAGAGATTCTTTAACCCAGAGTATCATCAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTTTCTTTCCTTGTAAGAGATTCTTTAACCCAGAGTATCATCAA  598

seq1  GTCCAGGGTGCCATCAAACTCACTCTGTAGCCAAAACTAAGCTTGGAGTA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGTGCCATCAAACTCACTCTGTAGCCAAAACTAAGCTTGGAGTA  648

seq1  TTGACCCTCCTGCCCATACTTGGGCTCAATCCTTCTGCCTGAGGCTCCCC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTCCTGCCCATACTTGGGCTCAATCCTTCTGCCTGAGGCTCCCC  698

seq1  AGGGGTTGGGACTACAGGCACAAACTTGTATAGTTGGACAAAGGCTTCCT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGGACTACAGGCACAAACTTGTATAGTTGGACAAAGGCTTCCT  748

seq1  TAAACTCTTTACTTGTGTTGGCTCACTTAGCCCTCCAAGAACAAAATTAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTTTACTTGTGTTGGCTCACTTAGCCCTCCAAGAACAAAATTAA  798

seq1  GAGGACATGAAAATCATCCTGAGCTTGAAAGAGGTAGACAGGAGTTTAAT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATGAAAATCATCCTGAGCTTGAAAGAGGTAGACAGGAGTTTAAT  848

seq1  AACTTGCTCCTGTCACACAGTATGAGAGTATGGAAAGAGGACCAACTCCA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTCCTGTCACACAGTATGAGAGTATGGAAAGAGGACCAACTCCA  898

seq1  AGGTTCAGTGTTTAACACCAGATGCACCTTACAAATCAAAGCCATAGAGT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGTGTTTAACACCAGATGCACCTTACAAATCAAAGCCATAGAGT  948

seq1  AGCAGCCTGCCCTCAACCTCCTTAGTCTGTGATCCAACCAATCGGATCCA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTGCCCTCAACCTCCTTAGTCTGTGATCCAACCAATCGGATCCA  998

seq1  ACAGAAACATCTGATTAGTGTTCAACACTGCCTCTGATTGTGAATAAC-C  1031
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGAAACATCTGATTAGTGTTCAACACTGCCTCTGATTGTGAATAACGC  1048

seq1  AGGGCTCACAATCCAAAAACTGTTGGAGGAATTC  1065
      ||||||||||||||||||||||||||||||||||
seq2  AGGGCTCACAATCCAAAAACTGTTGGAGGAATTC  1082