BAC Information

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BAC

Clone NameB6Ng01-200D06
Chromosome19 (Build37)
Map Location 22,786,828 - 22,787,535
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneTmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D06.bB6Ng01-200D06.g
ACCGA021332GA021333
length1,141708
definitionB6Ng01-200D06.b B6Ng01-200D06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatggcctcctgttctttaatatgcaaataaatgtataaatataa
cctgctgagtctggttactgttgtttttttgtatatttttaggtccaact
acttggtattggaaactgttaagatttagagttctcatctttgcagaata
tttctgcctttctcaacagtttttgattgcctttagctctacatgtaggg
gtgggaccctgtgagatttctcgcatcagcattggcatgccaactggtat
tgtgattgcttgggtcttgtatagtcacccatactattgaaattttgtgg
acagagcttccttttcacagctagaagaaacaatatcacagcagactatg
tgatcttctcattctcacactcttccagagctttaaaaaagggctgtgtt
ccagatgtatcagttggtgctgggcactccagattcagttgttacctgta
ttttgactagttgttgctagccacaagtgattgggtagattttttttgta
ccagtcatgatttccctccagttcggcaggtcttacccccatttagacag
ctgttggttacttccaagataaaatatttcatcattggaaatatcttgcc
atgaatatcattgttgtggcccatagatatcacagctgggtaggactatt
gaatactttcttgatttggaagcttgcatagttcttccagtacagagggt
agcggggaagctgttgggtcacatggaggttgagtcctctgagcactgtt
gttgttcagagtgtgtgatgtcttcaacaatggcaacttatcctcagctt
ctagggggcaactagggcaacagccacagcctatattgtttttagggtgt
ctctaagtcccccaaacaacaattttaaagggggggtctcatgcctagta
ctagctagttctatggctttggggaaaggacatttccacataaccataat
acatatggtgacaccatactatttacccatgtacactgatgtgaggaagg
tctgcgtcccaactcctcattctggtgctcgaactggtgttttgtacgaa
cacaccatgcctaccatccatcgatggactaatctagatccctttcattg
ggtgagtattgtatggtgcaaaatcaggttaatggactggc
gaattcatgaaggattgaaattagtcatctactggtgtggaatgttttaa
gaaacatttaacattataaacccacatggatctgaagtgatattcagtga
ttaggcacatgtattgcacttgcaaaggatctgagtttggttccttgtcc
ctatgttgggcagttcacgactgcatgaaactccagatccaagaaggatc
caatggttctggcttcttagagcactacactcatgtgcacaaacccagtc
tcagatgcacatgcataaatataattaaaaataaaatattttaaataagt
atgatattttgaataatctagacttaaccttataattcacacccctgata
gaaatggtattaaaaaacaactcaggcagggaacattcccagtggataaa
gcaactatcacacaaagtagaaggacctgagtttgactcaccagaaccca
tgtaaaagccaggtacagttgtagtagtatgagcatctgtagcatgccta
tagaggtgagtagcagagaatggagagcccctgatggcttacaggctagc
tatcctggtgtatacaggagcgaacaacagagaaaccctgcctcaacaag
gtgaaaggcaggggctgacacctgaggttgtccacctatgtgtagtagtc
atgccatatattagttatgcatacatatcctccctccctccctccctccc
tctgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22786828_22787535
seq2: B6Ng01-200D06.g_65_772 (reverse)

seq1  GGGACAGAGGGAGGGAGGGAGGGAGGGAGGATATGTATGCATAACTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGGGAGGGAGGGAGGGAGGGAGGATATGTATGCATAACTAATA  50

seq1  TATGGCATGACTACTACACATAGGTGGACAACCTCAGGTGTCAGCCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCATGACTACTACACATAGGTGGACAACCTCAGGTGTCAGCCCCTG  100

seq1  CCTTTCACCTTGTTGAGGCAGGGTTTCTCTGTTGTTCGCTCCTGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCTTGTTGAGGCAGGGTTTCTCTGTTGTTCGCTCCTGTATACA  150

seq1  CCAGGATAGCTAGCCTGTAAGCCATCAGGGGCTCTCCATTCTCTGCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATAGCTAGCCTGTAAGCCATCAGGGGCTCTCCATTCTCTGCTACT  200

seq1  CACCTCTATAGGCATGCTACAGATGCTCATACTACTACAACTGTACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTATAGGCATGCTACAGATGCTCATACTACTACAACTGTACCTGG  250

seq1  CTTTTACATGGGTTCTGGTGAGTCAAACTCAGGTCCTTCTACTTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACATGGGTTCTGGTGAGTCAAACTCAGGTCCTTCTACTTTGTGTG  300

seq1  ATAGTTGCTTTATCCACTGGGAATGTTCCCTGCCTGAGTTGTTTTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGCTTTATCCACTGGGAATGTTCCCTGCCTGAGTTGTTTTTTAAT  350

seq1  ACCATTTCTATCAGGGGTGTGAATTATAAGGTTAAGTCTAGATTATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTATCAGGGGTGTGAATTATAAGGTTAAGTCTAGATTATTCAA  400

seq1  AATATCATACTTATTTAAAATATTTTATTTTTAATTATATTTATGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATACTTATTTAAAATATTTTATTTTTAATTATATTTATGCATGT  450

seq1  GCATCTGAGACTGGGTTTGTGCACATGAGTGTAGTGCTCTAAGAAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAGACTGGGTTTGTGCACATGAGTGTAGTGCTCTAAGAAGCCAG  500

seq1  AACCATTGGATCCTTCTTGGATCTGGAGTTTCATGCAGTCGTGAACTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGGATCCTTCTTGGATCTGGAGTTTCATGCAGTCGTGAACTGCC  550

seq1  CAACATAGGGACAAGGAACCAAACTCAGATCCTTTGCAAGTGCAATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAGGGACAAGGAACCAAACTCAGATCCTTTGCAAGTGCAATACAT  600

seq1  GTGCCTAATCACTGAATATCACTTCAGATCCATGTGGGTTTATAATGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAATCACTGAATATCACTTCAGATCCATGTGGGTTTATAATGTTA  650

seq1  AATGTTTCTTAAAACATTCCACACCAGTAGATGACTAATTTCAATCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTTAAAACATTCCACACCAGTAGATGACTAATTTCAATCCTTC  700

seq1  ATGAATTC  708
      ||||||||
seq2  ATGAATTC  708