BAC Information

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BAC

Clone NameB6Ng01-200G04
Chromosome19 (Build37)7 (Build37)
Map Location 38,072,314 - 38,073,02228,221,975 - 28,222,474
singlet/doubletsingletsinglet
Overlap geneFer1l3
Upstream geneBtaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281
Downstream geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200G04.bB6Ng01-200G04.g
ACCGA021464GA021465
length710382
definitionB6Ng01-200G04.b B6Ng01-200G04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,072,314 - 38,073,022)(28,221,975 - 28,222,474)
sequence
gaattctgattctatgtcagacaatatatacttatagagagggactggaa
tcagaagatattcagcaatcaatgtggtgataacgacaatgatattacca
tcgcaacacagaaggtaatacacacctttgtctggtatgttagacaccca
acttaaaggctagatatccaaagctaaatgtcaacacccatgtggatatc
attgagctataaccatatgctttccatatggaattctgtcaaataaaacc
aaatctcaaatttgccagttctgtgattggaaattgaggatgaggcccat
atcattgacaaggggatgcatttatcacgaaaccaaacttccagtatttt
ccttcactatcttgttctgtctttccacagaagagcactcaccccagtgt
cttgtcccttttcatttagcagggaggtctgtttgtagggcaaagacctg
ttctggtccccaatcaggtccttcagggagacagttgctgtgccaattaa
tctgcagagaaaacaagaaagggcgcagcagcttatgagggagcacacat
ccacaggccattagaattcccagttccctcacattcgtttatccttatat
ctgccctggcagaaattgaagatactctaaagagacacacatgctcctct
ctttggctatcagactactgaaacaatggtccccaaattggaattttctc
tgagagactt
tatgagagattattgctcatcaggcaagatgctccatgcctttaatccca
gcacttgggaggcagaggcagaggcagaggcagaggcagaggcagaggca
gaggcagaggcagaggcagaggcttaggcagaggctgaggcagaggcaga
ggctgaggctgatgctgatgcagaggcagatgtagatgctgaggcagagg
ctgaggcagaggcagaggcagaggcagtgttcaaggacagcatgctctac
ataaagagttcctggatagctagagctacacagagagaccctgtctcaat
aactaacaaacaaaaacactcagagagataagagcttagatggagataag
ggggggggggagtttttttttctttttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38072314_38073022
seq2: B6Ng01-200G04.b_47_756

seq1  GAATTCTGATTCTATGTCAGACAATATATACTTATAGAGAGGGACTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCTATGTCAGACAATATATACTTATAGAGAGGGACTGGAA  50

seq1  TCAGAAGATATTCAGCAATCAATGTGGTGATAACGACAATGATATTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATATTCAGCAATCAATGTGGTGATAACGACAATGATATTACCA  100

seq1  TCGCAACACAGAAGGTAATACACACCTTTGTCTGGTATGTTAGACACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAACACAGAAGGTAATACACACCTTTGTCTGGTATGTTAGACACCCA  150

seq1  ACTTAAAGGCTAGATATCCAAAGCTAAATGTCAACACCCATGTGGATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGGCTAGATATCCAAAGCTAAATGTCAACACCCATGTGGATATC  200

seq1  ATTGAGCTATAACCATATGCTTTCCATATGGAATTCTGTCAAATAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTATAACCATATGCTTTCCATATGGAATTCTGTCAAATAAAACC  250

seq1  AAATCTCAAATTTGCCAGTTCTGTGATTGGAAATTGAGGATGAGGCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCAAATTTGCCAGTTCTGTGATTGGAAATTGAGGATGAGGCCCAT  300

seq1  ATCATTGACAAGGGGATGCATTTATCACGAAACCAAACTTCCAGTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGACAAGGGGATGCATTTATCACGAAACCAAACTTCCAGTATTTT  350

seq1  CCTTCACTATCTTGTTCTGTCTTTCCACAGAAGAGCACTCACCCCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTATCTTGTTCTGTCTTTCCACAGAAGAGCACTCACCCCAGTGT  400

seq1  CTTGTCCCTTTTCATTTAGCAGGGAGGTCTGTTTGTAGGGCAAAGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTTTTCATTTAGCAGGGAGGTCTGTTTGTAGGGCAAAGACCTG  450

seq1  TTCTGGTCCCCAATCAGGTCCTTCAGGGAGACAGTTGCTGTGCCAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCCCCAATCAGGTCCTTCAGGGAGACAGTTGCTGTGCCAATTAA  500

seq1  TCTGCAGAGAAAACAAGAAAGGGCGCAGCAGCTTATGAGGGAGCACACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGAAAACAAGAAAGGGCGCAGCAGCTTATGAGGGAGCACACAT  550

seq1  CCACAGGCCATTAGAATTCCCAGTTCCCTCACATTCGTTTATCCTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCCATTAGAATTCCCAGTTCCCTCACATTCGTTTATCCTTATAT  600

seq1  CTGCCCTGGCAGAAATTGAAGATACTCTAAAGAGACACACATGCTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGCAGAAATTGAAGATACTCTAAAGAGACACACATGCTCCTCT  650

seq1  CTTTGGCTATCAGACTACTGAAACAATGGTCCCCAAATTGGAA-TTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTGGCTATCAGACTACTGAAACAATGGTCCCCAAATTGGAATTTTCTC  700

seq1  TGAGAGACTT  709
      ||||||||||
seq2  TGAGAGACTT  710

seq1: chr7_28221975_28222474
seq2: B6Ng01-200G04.g_130_455 (reverse)

seq1  AAAAGAAAAAGAAAAAAAAGGAAGTTGTATCTTGGCTTTCCCAATCCTTC  50
      |||||||||||||||||||                           || |
seq2  AAAAGAAAAAGAAAAAAAA--------------------------ACTCC  24

seq1  CCCAACTCCTACAAGCTAGAAAGCCATGGGCCGCTCTACCACTGAGCCAT  100
      |||  | |||      ||                ||| |  || |||   
seq2  CCCCCCCCCT------TA----------------TCTCCATCTAAGC---  49

seq1  GCCCCCAGCCCCTCACTGGGGTATTTTAAGCAGGTGCACTACTGAGCTAC  150
                             | |||        | || |||||    
seq2  -----------------------TCTTA-------TCTCT-CTGAG----  64

seq1  ACCCCAGCCATCTTTTTACTT-TTTGTT-TTGAAACAATCACAATAAGTT  198
                | |||||  || || ||| |||| |||    |  |    |
seq2  ----------TGTTTTTGTTTGTTAGTTATTGAGACAGGGTCTCT---CT  101

seq1  GTGCAGATTGACTTTGAACTAATTTTGCTACCCAGGGGAGGTTTGAGCTT  248
      ||| || |          |||     |||| ||||         || || 
seq2  GTGTAGCT----------CTA-----GCTATCCAG---------GAACT-  126

seq1  CCTGGGCTCTGACCTTAACTTCCCGAGTGCTGTTACCGTTCGCCTGTACT  298
                   ||| |  |   |  ||||||         | || || 
seq2  -------------CTTTATGTAGAGCATGCTGT--------CCTTGAAC-  154

seq1  ACTACTCCCTCATCAAAGATTTGTTTTTCTTCTCACTCTGTTGTTGTTGT  348
         ||| ||||               | | |||  |||||         |
seq2  ---ACTGCCTC---------------TGCCTCTGCCTCTG-------CCT  179

seq1  TTGACTTTGTGTTTGTATTTTTGTTTGTTTCTTTATTTGTTTGTTTGAAA  398
        | || ||  |  | || |   | ||  |||  ||  |    |  |   
seq2  CAGCCTCTGCCTCAGCATCTACATCTGCCTCTGCATCAG--CATCAGCCT  227

seq1  GAGGATCTTAGATCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC  448
       ||  |||     ||||||||| ||||||||||  |||||||||||||||
seq2  CAGCCTCT---GCCTCTGCCTCAGCCTCTGCCTAAGCCTCTGCCTCTGCC  274

seq1  TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC  324

seq1  CC  500
      ||
seq2  CC  326