BAC Information

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BAC

Clone NameB6Ng01-200P14
Chromosome19 (Build37)
Map Location 27,898,672 - 27,899,719
singlet/doubletsinglet
Overlap geneRfx3
Upstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612
Downstream geneLOC666997, LOC433235, Glis3, EG434460, EG627788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200P14.b
ACCGA021878
length1,054
definitionB6Ng01-200P14.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgactctgctgaagctactttgttacaaagagtccttgcctcca
gttttttccccattatgtatgtcttatcccaagtcaaaaatttctttcta
gaaaaatcaaaattccattcttttggttaaaagctttagatagctttaaa
gctatttctacacacaaaaaccctcaaacttaattacctgcaagtaacac
taaatcccttaatgtatgctcaaactgctgtatatattgcctctttcagt
ctctacttaggcgtctttgcaactctacttctgcaaaacaacttaaccaa
accagggggcactgccagcctcaccctttacctccatgtgctcatgggaa
catttcccttctacctcgagactcccttctttttctcactcttagtccct
tcccaaccatcactttctcaattatgtttgctaattctctctctcccagg
gtttgtacaattactcaggattctacagttctttgactaacactggactt
tggcacaggacatggcattactttattcccctcattcctcacacacttta
tatgttcaaaagtatagactatgtcttacccttgagtttaggacccagca
catagtatgactttaatcagtgtctcttgaccagaggaaaacctagtatg
tgatgttgtctttcaatgacttataacccatgctgcatactagactagtg
tggatgaggagatcttgcctacgcacataaccactgttacaatactgaag
aagccagggaaaccattcctttttgctaatgcttctatcacttcggtaaa
aaaaggacatttgtaactacggagcatatggaagctatactggtaaaaat
gggcgagatcacaaagtgtttctttactgtaaattgtgacactagtccta
agtgactgaagagctcttcacaaaagtgcggtgagcctgtttctttatac
tttagcttacttgaaagcatggttgcttaatgcctttgagttgtcagaga
atgtgaggactgatcatgaccgagatttggtctttcatcccatgattata
attc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27898672_27899719
seq2: B6Ng01-200P14.b_44_1097

seq1  GAATTCTGACTCTGCTGAAGCTACTTTGTTAACAAAGAGTCCTTGCCTCC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCTGACTCTGCTGAAGCTACTTTGTT-ACAAAGAGTCCTTGCCTCC  49

seq1  AGTTTTTTCCCCATTAGTTATGTCTTATCCCAAATCAAAAATTTCTTTCT  100
      ||||||||||||||||  ||||||||||||||| ||||||||||||||||
seq2  AGTTTTTTCCCCATTATGTATGTCTTATCCCAAGTCAAAAATTTCTTTCT  99

seq1  AGAAAAATCAAAATTCCATTCTTTTGCTTAAAAGCTTTAGATAGCTTTAA  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAAAAATCAAAATTCCATTCTTTTGGTTAAAAGCTTTAGATAGCTTTAA  149

seq1  AGCTATTTCTACACACAAAAACCCTCAAACTTAATTACCTGCAAGTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCTACACACAAAAACCCTCAAACTTAATTACCTGCAAGTAACA  199

seq1  CTAAATCCCTTAATGTATGCTCAAACTGCTGTAGATATTGCCTCTTTCAC  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CTAAATCCCTTAATGTATGCTCAAACTGCTGTATATATTGCCTCTTTCAG  249

seq1  TCTCTACTTAAGCATCTTTGCAACTCTACTTCTGCAAAACAACTTAACCA  300
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTAGGCGTCTTTGCAACTCTACTTCTGCAAAACAACTTAACCA  299

seq1  AACCATGGGCCACTGCCAGCCTCACCCTTTACCTCCATGTGCTCATGGGA  350
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGGGCACTGCCAGCCTCACCCTTTACCTCCATGTGCTCATGGGA  349

seq1  ACATTTCCCTTCTACCTCGAGACTCCCTTCTTTTTCTCACTCTTAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCCTTCTACCTCGAGACTCCCTTCTTTTTCTCACTCTTAGTCCC  399

seq1  TTCCCAAGCATCACTTTCTCAATTATGTTTCCTAATTCTCTCTCTCCCAG  450
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCCAACCATCACTTTCTCAATTATGTTTGCTAATTCTCTCTCTCCCAG  449

seq1  GGTTTGTACAATTACTCAGTATTCTACAGTTCTTTGACTAACACTGGACT  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTTTGTACAATTACTCAGGATTCTACAGTTCTTTGACTAACACTGGACT  499

seq1  TTGGCACAGGACATTGCATTACTTTATTCCCCTCATTCCTCACACACTTT  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGCACAGGACATGGCATTACTTTATTCCCCTCATTCCTCACACACTTT  549

seq1  ATATTTTCAAAAGTAGAGACTATGTCTTACCCTTGAGTTTAGGACCCAGC  600
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATGTTCAAAAGTATAGACTATGTCTTACCCTTGAGTTTAGGACCCAGC  599

seq1  ACATAGTATGCCTTTAATCAGTGTCTCTTGACCAGAGGAAAGCCTATTAT  650
      |||||||||| |||||||||||||||||||||||||||||| |||| |||
seq2  ACATAGTATGACTTTAATCAGTGTCTCTTGACCAGAGGAAAACCTAGTAT  649

seq1  GTGATGTTGTCTTTCTATGACTTAGAACCCATGCTGCATACTACACTAGT  700
      ||||||||||||||| |||||||| |||||||||||||||||| ||||||
seq2  GTGATGTTGTCTTTCAATGACTTATAACCCATGCTGCATACTAGACTAGT  699

seq1  GTGGATGAGGAGATCTTGCCTACACACATAACCACT-TTAGAATAATGAA  749
      ||||||||||||||||||||||| |||||||||||| ||| |||| ||||
seq2  GTGGATGAGGAGATCTTGCCTACGCACATAACCACTGTTACAATACTGAA  749

seq1  GAAGCCAGGGAAACCATTCCTTTTTGCTAGTACTTCTATCACTTCAGT-A  798
      ||||||||||||||||||||||||||||| | ||||||||||||| || |
seq2  GAAGCCAGGGAAACCATTCCTTTTTGCTAATGCTTCTATCACTTCGGTAA  799

seq1  GGAAAGGACAGTTATAACTACAGAGCATATGTAAGCTATACTGGTAAAAA  848
        |||||||| || ||||||| ||||||||| ||||||||||||||||||
seq2  AAAAAGGACATTTGTAACTACGGAGCATATGGAAGCTATACTGGTAAAAA  849

seq1  -GGGCGAGTTCACAAAATGTTTCTTTACTGTAAATTGTGACACGAGTCCT  897
       ||||||| ||||||| |||||||||||||||||||||||||| ||||||
seq2  TGGGCGAGATCACAAAGTGTTTCTTTACTGTAAATTGTGACACTAGTCCT  899

seq1  AAGTGACTGGAAGGCTCTTCACAACAGTGCAGTG-GGCTGTGT-ATTCCA  945
      ||||||||| |  ||||||||||| ||||| ||| | |||| |  ||  |
seq2  AAGTGACTGAAGAGCTCTTCACAAAAGTGCGGTGAGCCTGTTTCTTTATA  949

seq1  CTTAAGCTTCCTGAAAACCATGGCTGC-TAATG-CTTTGA-TTGTCAAGG  992
      ||| ||||| ||  ||| ||||| ||| ||||| |||||| ||||||  |
seq2  CTTTAGCTTACTTGAAAGCATGGTTGCTTAATGCCTTTGAGTTGTCAGAG  999

seq1  ATTATGAGCACAGATCA-GACAGAG-TTGGTTCTTTTCAATCCCATGATT  1040
      | | |||| || ||||| ||| ||| || | |||||   ||||||||| |
seq2  AATGTGAGGACTGATCATGACCGAGATTTGGTCTTT--CATCCCATGA-T  1046

seq1  TATAATTC  1048
      ||||||||
seq2  TATAATTC  1054