BAC Information

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BAC

Clone NameB6Ng01-202J21
Chromosome19 (Build37)
Map Location 17,251,337 - 17,252,364
singlet/doubletsinglet
Overlap geneA230083H22Rik
Upstream geneGnaq, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202J21.bB6Ng01-202J21.g
ACCGA023064GA023065
length7631,056
definitionB6Ng01-202J21.b B6Ng01-202J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactactgttgttttgctaggtagacatgtaaaatattgaccttt
atatccataaataagtgctgctcttagccttggtcagagaagtttctttc
ttcagtgagcagctgtagatgtagagattccgagctggtcaaagtgttgt
aagctagtgacagttggatgctcagacttaaaggaatctattttagtgcc
tgaaaagtcttaggaacattgtgaaagaggcagaaagaagagggttaaga
gctgtaggctggggaggattcccaagaaatggacatgggaaggggtttac
agccattagctcacagctatggttactgccagtcaccattccagcatgaa
tgggggaggggacataaggttccatccctagctaagaagcaattgacaat
ttatggcttctggggctgtgggaaaggaaatcacctttttaggtttcttc
taggtttactgggcacaggtggatgactgtagcaatgaatgttaggaaac
actaactagactcagtggattatagcaaagaaagaaaaaaaggacatgga
ggtaggagggggatggcccacagtggctgactatgatcgtctcatgctct
gacagaggtgtgattctgtgagctgaagattagttttggggattctgggg
atttcgtgagaaggaatgtctaaagtccgagcaagggctgttgctgcttc
tcctttgctgcttgggttcctgctgttgcatttggctattttgtgggctt
ttactaggtttgg
gaattcacatgatctaaagttactgggagttgataaaaaccaaaaccaaa
accaaaacaacaacaaaccaaagacacctctaagcatgtcatgtccctgg
cagccttgaaggtacatcccatctctgacaacatgtgatgccaatcaacc
caaaatcagaaactgtaaaagaatttagagtgctccagagaagctcagat
ggtacagggggactgggaggaggaagctgcagacgacggaccttctaaat
gtaacatgagaaataagccggctgacataggaaagttgccatcacattag
tgttcctattagcaggccatgcatgacagacagctagatctaagtccaac
tgaaatgctcctctgccattttaggacagttgaggctgtactcaccgtag
gatgttagggaggggcatttttggtcttggctcaatttaaaagttcacgt
tcctgtgcccagttcattgtcttgaccagtgtgataacaggtgaacattc
tacattgctatcgactctgttttgatatgctcattaaatgttactgtttt
cgtgattattttttctaaaggtatagaagaaagactgcccctgccccgta
ccttaatatgcccactaatgtgtacttccagcacacaccgctcaagagtt
tctggattgttttgttgcactttgtgtggtggtaggatggagccgagggc
accactcacagtaggcgatctgtctaccgctgagcccagtgccaaagaac
tcaacagagatgcttcaaattcaggctataagatcaatataattccaaat
agggcttgcaagtgaaaagggatgctaggagtcagaatggttggatccag
agataaagagccaatatttttttccttagcttcataattggctattcttc
ccttttgtgcggtttgaattaagcttgcccacaaaaaaggacttgttgca
aacttctgattcttatccactaaaaagggctccatggtcaagaagaggat
gcaaagctgcttcctgtctagcctttagcatggtgttcattctggaagca
ttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17251337_17252364
seq2: B6Ng01-202J21.g_67_1121

seq1  GAATTCACATGATCTAAAGTTACTGGGAGTTGATAAAAACCAAAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGATCTAAAGTTACTGGGAGTTGATAAAAACCAAAACCAAA  50

seq1  ACCAAAACAACAACAAACCAAAGACACCTCTAAGCATGTCATGTCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACAACAACAAACCAAAGACACCTCTAAGCATGTCATGTCCCTGG  100

seq1  CAGCCTTGAAGGTACATCCCATCTCTGACAACATGTGATGCCAATCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGAAGGTACATCCCATCTCTGACAACATGTGATGCCAATCAACC  150

seq1  CAAAATCAGAAACTGTAAAAGAATTTAGAGTGCTCCAGAGAAGCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGAAACTGTAAAAGAATTTAGAGTGCTCCAGAGAAGCTCAGAT  200

seq1  GGTACAGGGGGACTGGGAGGAGGAAGCTGCAGACGACGGACCTTCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGGGGACTGGGAGGAGGAAGCTGCAGACGACGGACCTTCTAAAT  250

seq1  GTAACATGAGAAATAAGCCGGCTGACATAGGAAAGTTGCCATCACATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATGAGAAATAAGCCGGCTGACATAGGAAAGTTGCCATCACATTAG  300

seq1  TGTTCCTATTAGCAGGCCATGCATGACAGACAGCTAGATCTAAGTCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATTAGCAGGCCATGCATGACAGACAGCTAGATCTAAGTCCAAC  350

seq1  TGAAATGCTCCTCTGCCATTTTAGGACAGTTGAGGCTGTACTCACCGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCTCCTCTGCCATTTTAGGACAGTTGAGGCTGTACTCACCGTAG  400

seq1  GATGTTAGGGAGGGGCATTTTTGGTCTTGGCTCAATTTAAAAGTTCACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGGAGGGGCATTTTTGGTCTTGGCTCAATTTAAAAGTTCACGT  450

seq1  TCCTGTGCCCAGTTCATTGTCTTGACCAGTGTGATAACAGGTGAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCCCAGTTCATTGTCTTGACCAGTGTGATAACAGGTGAACATTC  500

seq1  TACATTGCTATCGACTCTGTTTTGATATGCTCATTAAATGTTACTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCTATCGACTCTGTTTTGATATGCTCATTAAATGTTACTGTTTT  550

seq1  CGTGATTATTTTTTCTAAAGGTATAGAAGAAAGACTGCCCCTGCCCCGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTATTTTTTCTAAAGGTATAGAAGAAAGACTGCCCCTGCCCCGTA  600

seq1  CCTTAATATGCCCACTAATGTGTACTTCCAGCACACACCGCTCAAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATATGCCCACTAATGTGTACTTCCAGCACACACCGCTCAAGAGTT  650

seq1  TCTGGATTGTTTTGTTGCACTTTGTGTGGTGGTAGGATGGAGCCGAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGTTTTGTTGCACTTTGTGTGGTGGTAGGATGGAGCCGAGGGC  700

seq1  ACCACTCACAGTAGGCGATCTGTCTACCGCTGAGCCCAGTGCCAAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCACAGTAGGCGATCTGTCTACCGCTGAGCCCAGTGCCAAAGAAC  750

seq1  TCAACAGAGATGCTTCAAATTCAGGCTATAAGATCAATATAA-TCCAAAT  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAACAGAGATGCTTCAAATTCAGGCTATAAGATCAATATAATTCCAAAT  800

seq1  AGGGCTTGCAAGTGAAAAGGGATGCTAGGAGTCAGAATGGTTGGATCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGCAAGTGAAAAGGGATGCTAGGAGTCAGAATGGTTGGATCCAG  850

seq1  AGATAAAGAGCAAATATTTTTT--CCTAGC-TCATAA-TGGCTA-TCT--  892
      ||||||||||| ||||||||||  | |||| |||||| |||||| |||  
seq2  AGATAAAGAGCCAATATTTTTTTCCTTAGCTTCATAATTGGCTATTCTTC  900

seq1  CCCTTTGTGCGGTTTGAA-TAAGCTTGCAC---AAAAAGGACTTG-TGCA  937
      || ||||||||||||||| ||||||||| |   |||||||||||| ||||
seq2  CCTTTTGTGCGGTTTGAATTAAGCTTGCCCACAAAAAAGGACTTGTTGCA  950

seq1  A--CTCTGATTC-TATCCACTAAAA--GGCT-CATGGGCAAAGAGAGGAT  981
      |   |||||||| ||||||||||||  |||| ||||| |||  |||||||
seq2  AACTTCTGATTCTTATCCACTAAAAAGGGCTCCATGGTCAAGAAGAGGAT  1000

seq1  GC-AAGCTGCTT-CTGTC-AGCC-TTAGCATG--GGTCATCGTG--AGCA  1023
      || ||||||||| ||||| |||| ||||||||  | ||||  ||  ||||
seq2  GCAAAGCTGCTTCCTGTCTAGCCTTTAGCATGGTGTTCATTCTGGAAGCA  1050

seq1  TTATA  1028
      |||||
seq2  TTATA  1055