BAC Information

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BAC

Clone NameB6Ng01-203I16
Chromosome19 (Build37)
Map Location 18,466,782 - 18,467,871
singlet/doubletsinglet
Overlap genenone
Upstream geneRfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203I16.bB6Ng01-203I16.g
ACCGA023727GA023728
length1,1071,108
definitionB6Ng01-203I16.b B6Ng01-203I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggattggtaaagatcctttcctcccaatctgttggtgg
cctttttgtcttattgatggtgtttttgccttacagaatctttgcaattt
tatgaggttccatttgtcaattctcaatcttacaacacaagccattgctt
ttctattcaggaatttttcccctgtgcccatatcttctgagcttttcccc
actttctcctgtataagtttcagtgtctctggttttatgtggagtttctt
gatccacttagatttgaccttagtacaaggagataagaatagaacagttt
gcattcttctacatgataaccaccagttgtgccagcaccatttgttgaga
atgctgtcttttttccactggatgattttagctcccttgtcaaagatcaa
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgtcattatagcagtaccatgcagttttttaatcacaa
tttctccatactacagctttaggtcaggcatggtgattccaccggaggtt
cttttatccttgagaagagtttttgctatcctagatttttttgttattcc
agatgaatttgcaaagtgccctttctaattcgttgaagatgagttgggaa
ttttgatggagattgcattgaatctgtagattgcttttggcaagatagcc
atttttactatattgatcctgccaatccatgtgcatgggagatctttcca
tcttctgaaaacttctttgatttatttcttcagagacttgaagttcttat
cgtacagatctttcacttctttaagttagagtcacagcaaggaattttat
aatattgtggctattgataaggtgtgtttccctaatttcttctcagcctg
tttatccttggtgtacaggagccattacctgttgagtattataccagcta
cttcactgaagcctgcttatcaagttacgagttctctagtgaaattttag
gggtcac
gaattccatgaagtccaaactctgccgtctatggcagcctgtagtgccag
cagggtacaatgttcttctccactgtggctctgtcccaaacatttctggg
tttttgtttagcataaaatatgtactgaaaaataattattgagggaatga
ctcacccgcacattgcctagttggaaattttatgtccttcctatgtacta
taatgtatgaattgagaaatattgataagatgatttcttgtccagtcttg
aggtatgttctgaaattcttgtgtcaagttggaaaatgtttcttttactg
gtacccaaggagcctatttttaaaaaagtgtttttgagaacttaatacat
cagcactgcatctgcatcctttccatgcttgcctcctccaagtctcctcc
catatcctccctctgcaactcatgatcatatatgtatccatatatgtgtg
tatgtatgtatgcatgtaagtatgtatgtatgtatgtatctattcctttg
tcaaaatgacaaaagctagagttatcttagaaaagagacttcagctgaga
aaatgtccctgtcagattagtctgtacgcaagactacaggacatcttctt
gactaatgattgatgtgggagggcccagctcagaggaaacaatgccatct
tggaaggtggtcctggggtgtacaagaaagcaagctgagcaagccagtaa
gcagcatttctctgtggcatctgctttggttctttgctttgactttttgc
cccgaatttccctcagcaatggactgttacctggaggtataagatgaaaa
aaaatcttttctatgttcaggtcatagttctttattacagcaacaggaca
cacacacacacacacacacacacacacacacgcatgcacacacgcacatg
cataggaacacgcacatgcatgtatactctactgagtccacttgcattgc
tcatattattcctatgtcctaggatgaccacctccacgattgggaccacc
tatgtcggagccttttccctgggagggaactgaattcctccctcctttca
gccatctggttgacccacctgtccttcatgaatgggtgggaaatacggta
aacttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18466782_18467871
seq2: B6Ng01-203I16.g_65_1172 (reverse)

seq1  GAAAAGTTCA-CGTA-TTCCCA-CCATTCATGAA-GACAGGT-GGTCAA-  44
      |||||||| | |||| |||||| ||||||||||| ||||||| |||||| 
seq2  GAAAAGTTTACCGTATTTCCCACCCATTCATGAAGGACAGGTGGGTCAAC  50

seq1  CAGAT-GCTGAAA-GAGGGAG--AATCAGTTTCCT-CCAGGGAAAA-GCT  88
      ||||| ||||||| |||||||  | |||||| ||| |||||||||| |||
seq2  CAGATGGCTGAAAGGAGGGAGGAATTCAGTTCCCTCCCAGGGAAAAGGCT  100

seq1  CCGACATAGGTGGT-CCAATCGTG--AGTGGTCATCCTAGGACATAGGAA  135
      |||||||||||||| |||||||||   |||||||||||||||||||||||
seq2  CCGACATAGGTGGTCCCAATCGTGGAGGTGGTCATCCTAGGACATAGGAA  150

seq1  T-ATATGAGCAATGCAAAGTGGACTCAGTAGAGTATACATGCATGTGCGT  184
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATATGAGCAATGC-AAGTGGACTCAGTAGAGTATACATGCATGTGCGT  199

seq1  GTTCCTATGCATGTGCGTGTGTGCATGCGTGTGTGTGTGTGTGTGTGTGT  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATGCATGTGCGTGTGTGCATGCGTGTGTGTGTGTGTGTGTGTGT  249

seq1  GTGTGTGTGTGTCCTGTTGCTGTAATAAAG-ACTATGACCTGAACATAGA  283
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGTGTGTGTGTCCTGTTGCTGTAATAAAGAACTATGACCTGAACATAGA  299

seq1  AAAGA-TTTTTTTCATCTTATACCTCCAGGTAACAGTCCATTGCTGAGGG  332
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTTTTTCATCTTATACCTCCAGGTAACAGTCCATTGCTGAGGG  349

seq1  AAATTCGGGGCAAAAAGTCAAAGC-AAGAACCAAAGCAGATGCCACAGAG  381
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATTCGGGGCAAAAAGTCAAAGCAAAGAACCAAAGCAGATGCCACAGAG  399

seq1  AAATGCTGCTTACTGGCTTGCTCAGCTTGCTTTCTTGTACACCCCAGGAC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGCTTACTGGCTTGCTCAGCTTGCTTTCTTGTACACCCCAGGAC  449

seq1  CACCTTCCAAGATGGCATTGTTTCCTCTGAGCTGGGCCCTCCCACATCAA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCAAGATGGCATTGTTTCCTCTGAGCTGGGCCCTCCCACATCAA  499

seq1  TCATTAGTCAAGAAGATGTCCTGTAGTCTTGCGTACAGACTAATCTGACA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTCAAGAAGATGTCCTGTAGTCTTGCGTACAGACTAATCTGACA  549

seq1  GGGACATTTTCTCAGCTGAAGTCTCTTTTCTAAGATAACTCTAGCTTTTG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTTCTCAGCTGAAGTCTCTTTTCTAAGATAACTCTAGCTTTTG  599

seq1  TCATTTTGACAAAGGAATAGATACATACATACATACATACTTACATGCAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGACAAAGGAATAGATACATACATACATACATACTTACATGCAT  649

seq1  ACATACATACACACATATATGGATACATATATGATCATGAGTTGCAGAGG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACACACATATATGGATACATATATGATCATGAGTTGCAGAGG  699

seq1  GAGGATATGGGAGGAGACTTGGAGGAGGCAAGCATGGAAAGGATGCAGAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATATGGGAGGAGACTTGGAGGAGGCAAGCATGGAAAGGATGCAGAT  749

seq1  GCAGTGCTGATGTATTAAGTTCTCAAAAACACTTTTTTAAAAATAGGCTC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCTGATGTATTAAGTTCTCAAAAACACTTTTTTAAAAATAGGCTC  799

seq1  CTTGGGTACCAGTAAAAGAAACATTTTCCAACTTGACACAAGAATTTCAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTACCAGTAAAAGAAACATTTTCCAACTTGACACAAGAATTTCAG  849

seq1  AACATACCTCAAGACTGGACAAGAAATCATCTTATCAATATTTCTCAATT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCTCAAGACTGGACAAGAAATCATCTTATCAATATTTCTCAATT  899

seq1  CATACATTATAGTACATAGGAAGGACATAAAATTTCCAACTAGGCAATGT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTATAGTACATAGGAAGGACATAAAATTTCCAACTAGGCAATGT  949

seq1  GCGGGTGAGTCATTCCCTCAATAATTATTTTTCAGTACATATTTTATGCT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTGAGTCATTCCCTCAATAATTATTTTTCAGTACATATTTTATGCT  999

seq1  AAACAAAAACCCAGAAATGTTTGGGACAGAGCCACAGTGGAGAAGAACAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACCCAGAAATGTTTGGGACAGAGCCACAGTGGAGAAGAACAT  1049

seq1  TGTACCCTGCTGGCACTACAGGCTGCCATAGACGGCAGAGTTTGGACTTC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTGCTGGCACTACAGGCTGCCATAGACGGCAGAGTTTGGACTTC  1099

seq1  ATGGAATTC  1090
      |||||||||
seq2  ATGGAATTC  1108