BAC Information

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BAC

Clone NameB6Ng01-203J04
Chromosome19 (Build37)
Map Location 4,130,081 - 4,328,714
singlet/doubletdoublet
Overlap geneTmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip
Downstream geneLOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203J04.bB6Ng01-203J04.g
ACCGA023751GA023752
length363969
definitionB6Ng01-203J04.b B6Ng01-203J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,130,081 - 4,130,449)(4,327,744 - 4,328,714)
sequence
tctctgtgtgtttggtccatctatggctgctgtgtcccatcgggtcatgg
ttgagtttatcaagacattgcatgtatgcttagctcagggcctgccagtg
acatcattcctgtcattcctgccaggcttagaggttaactgtctcctggg
ctaacttgaggcagttgtttcaagctcccacacatagatcgtagctttca
ggatcttgttggtctgtccactaaaaaaggccgtggggcgggggcctact
gcccttccattacattctttcatttgtgtgtttgtgggtggaggagggaa
tgtatgccacagctcaaatgttcatttttgtctgtgtgggtggaggaggg
catgaatgccata
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaacaa
acaaacaaaaaaaatttattttatgtatatgagtagtacactgtagctgt
cttcagacacaccagaagagcacattgagtcccattacggatggttgtga
gccaccatatggttgctgggatttgaactcagaacctctataagagcagt
cagtgctcgtaactgctgagccatctctccagccccctgaaggaagttat
cttaataagaaaagacaagccaacaaagagtgaattaattgcctttgatg
gtctagtttctaggcagttcagtcccaagtctttgtcagtcattactatc
ttgtctttgtacaccccaagtgaaccaagtctcctatcttcatttaaagg
gactatgaaatttaaaggttcaaaatctggtcttctgatctttgtctttt
tgtagcccagactgcctcattcagttacgtgttctctctgtggagaagta
gatcagaatgaagagacccaggactttgaaaagaaactcatggaatgctg
catctgcaacgagatagttcatcctggctgcctccaggtaaatagatgcc
taaaggcccttgacaagagagtggaacacctatcagtagaggctggtact
atccctactgtggactttgagctgccttgtcacagaggagaatagtagcc
cattgttcaggtgtctcctgtgtatcagctatctagtaatttctgaggag
agaatggtatacaaaacagaccagttaatgtcccagtggtcatgggacat
atcccagagggccctggagagtgtgtttgaaatcttaaggccgttgtaat
gaaactttgaagaaatgtttgaggatgcttcaagctcctaggtgtcccgc
tgtatccttcatttatatctcaaatatagcttaaagggaatggtggcaaa
ggtgattgggtaggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4130081_4130449
seq2: B6Ng01-203J04.b_46_414

seq1  GAATTCTCTCTGTGTGTTTGGTCCATCTATGGCTGCTGTGTCCCATCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTGTGTTTGGTCCATCTATGGCTGCTGTGTCCCATCGGG  50

seq1  TCATGGTTGAGTTTATCAAGACATTGCATGTATGCTTAGCTCAGGGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTGAGTTTATCAAGACATTGCATGTATGCTTAGCTCAGGGCCTG  100

seq1  CCAGTGACATCATTCCTGTCATTCCTGCCAGGCTTAGAGGTTAACTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACATCATTCCTGTCATTCCTGCCAGGCTTAGAGGTTAACTGTCT  150

seq1  CCTGGGCTAACTTGAGGCAGTTGTTTCAAGCTCCCACACATAGATCGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTAACTTGAGGCAGTTGTTTCAAGCTCCCACACATAGATCGTAG  200

seq1  CTTTCAGGATCTTGTTGGTCTGTCCACTAAAAAAGGCCGTGGGGCGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGATCTTGTTGGTCTGTCCACTAAAAAAGGCCGTGGGGCGGGGG  250

seq1  CCTACTGCCCTTCCATTACATTCTTTCATTTGTGTGTTTGTGGGTGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCCTTCCATTACATTCTTTCATTTGTGTGTTTGTGGGTGGAGG  300

seq1  AGGGAATGTATGCCACAGCTCAAATGTTCATTTTTGTCTGTGTGGGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGTATGCCACAGCTCAAATGTTCATTTTTGTCTGTGTGGGTGGA  350

seq1  GGAGGGCATGTATGCCATA  369
      |||||||||| ||||||||
seq2  GGAGGGCATGAATGCCATA  369

seq1: chr19_4327744_4328714
seq2: B6Ng01-203J04.g_65_1033 (reverse)

seq1  CCACCCCTACCCCAATCACCTTTGCCACCA-TCCCTTTAAGCTTATATTC  49
      ||||||||| |||||||||||||||||||| ||||||||||| |||||| 
seq2  CCACCCCTA-CCCAATCACCTTTGCCACCATTCCCTTTAAGC-TATATT-  47

seq1  TGAGATAT-AATGAGGGATACAGCGGGGACACCTAGGAGCTTGAAGCATC  98
      |||||||| ||||| ||||||||| |||||||||||||||||||||||||
seq2  TGAGATATAAATGAAGGATACAGC-GGGACACCTAGGAGCTTGAAGCATC  96

seq1  CTCAAACATTTCTTC-AAGTTTCATTACAACGGCCTTAAGATTTCCAACA  147
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CTCAAACATTTCTTCAAAGTTTCATTACAACGGCCTTAAGATTTCAAACA  146

seq1  CACTCTCCAGGGCCCTCTGGGATATGTCCCATGACCACTGGGACATTAAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCAGGGCCCTCTGGGATATGTCCCATGACCACTGGGACATTAAC  196

seq1  TGGTCTGTTTTGTATACCATTCTCTCCTCAGAAATTACTAGATAGCCTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTCTGTTTTGTATACCATTCTCTCCTCAGAAATTACTAGATAG-CTGA  245

seq1  TACACAGGAGACACCTGAACAATGGGCTACTATTCTCCTCTGTGACAAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGAGACACCTGAACAATGGGCTACTATTCTCCTCTGTGACAAGG  295

seq1  CAGCTCAAAGTCCACAGTAGGGATAGTACCAGCCTCTACTGATAGGTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAAGTCCACAGTAGGGATAGTACCAGCCTCTACTGATAGGTGTT  345

seq1  CCACTCTCTTGTCAAGGGCCTTTAGGCATCTATTTACCTGGAGGCAGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTTGTCAAGGGCCTTTAGGCATCTATTTACCTGGAGGCAGCCA  395

seq1  GGATGAACTATCTCGTTGCAGATGCAGCATTCCATGAGTTTCTTTTCAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACTATCTCGTTGCAGATGCAGCATTCCATGAGTTTCTTTTCAAA  445

seq1  GTCCTGGGTCTCTTCATTCTGATCTACTTCTCCACAGAGAGAACACGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGTCTCTTCATTCTGATCTACTTCTCCACAGAGAGAACACGTAA  495

seq1  CTGAATGAGGCAGTCTGGGCTACAAAAAGACAAAGATCAGAAGACCAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAGGCAGTCTGGGCTACAAAAAGACAAAGATCAGAAGACCAGAT  545

seq1  TTTGAACCTTTAAATTTCATAGTCCCTTTAAATGAAGATAGGAGACTTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTTTAAATTTCATAGTCCCTTTAAATGAAGATAGGAGACTTGG  595

seq1  TTCACTTGGGGTGTACAAAGACAAGATAGTAATGACTGACAAAGACTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGGGTGTACAAAGACAAGATAGTAATGACTGACAAAGACTTGG  645

seq1  GACTGAACTGCCTAGAAACTAGACCATCAAAGGCAATTAATTCACTCTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACTGCCTAGAAACTAGACCATCAAAGGCAATTAATTCACTCTTT  695

seq1  GTTGGCTTGTCTTTTCTTATTAAGATAACTTCCTTCAGGGGGCTGGAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTGTCTTTTCTTATTAAGATAACTTCCTTCAGGGGGCTGGAGAG  745

seq1  ATGGCTCAGCAGTTACGAGCACTGACTGCTCTTATAGAGGTTCTGAGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCAGTTACGAGCACTGACTGCTCTTATAGAGGTTCTGAGTTC  795

seq1  AAATCCCAGCAACCATATGGTGGCTCACAACCATCCGTAATGGGACTCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGCAACCATATGGTGGCTCACAACCATCCGTAATGGGACTCAA  845

seq1  TGTGCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTACTCATATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTACTCATATAC  895

seq1  ATAAAATAAATTTTTTTTGTTTGTTTGTTTTCGAGACAGGGTTTCTCTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATTTTTTTTGTTTGTTTGTTTTCGAGACAGGGTTTCTCTGT  945

seq1  ATAGCCCTGGCTGTCCTGGAATTC  971
      ||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTGGAATTC  969