BAC Information

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BAC

Clone NameB6Ng01-203L12
Chromosome19 (Build37)2 (Build37)
Map Location 49,604,284 - 49,605,427100,285,400 - 100,285,437
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203L12.bB6Ng01-203L12.g
ACCGA023854GA023855
length1,136479
definitionB6Ng01-203L12.b B6Ng01-203L12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,604,284 - 49,605,427)(100,285,400 - 100,285,437)
sequence
gaattctactcaaaatattagaggaagtatccgtgtgatgcttcccaccc
tctcctgtagtgctggcagccaaattcatgctgttgacctgcaatgagcc
attggaattttctctaccatacaacagtaatctaaatcctctgggtctct
ttcattggaccaaagggtggtgactcccaagattccatatgggtgaggtt
aagttcaggaatctgcatccaagctcaccgcgagggacttgttttattac
agcagttcttagcgaaaacaggctgttcttaaatctctctcatcatggtc
attgctgctgctgccataagacctgatgctaattggagaaattcagaatt
ttagtcaatagtggttttaatcaactgacacaactacagtcgctcaaagt
gtcaatttgcttggattaaagagctcataggtagctgtgaatgtgatgtt
tctagaaaggtccatgagatggatggtccattagagatggatttgtgggg
gcagggacagagtgaagaaaatttgtcccacactgagtaggtaccatgca
gcaagtggtgtctctgacagaacaaaaggcagagaaaaggagaggtcaca
cctcttctcctgaagcttagatacccctcttctcttgccctttaatatga
gaacttttgactgtctagtctttctattttgaaacttgaacagaagagtc
ctgggttctctggcttttgaccttgaaccaagccattgaacctagcccca
ttgtcccaagttattcagacttgaacagccaaatgaagccacttccctaa
tcctactgctaaaacagagcatttaataggacttcttagtctccgcaatt
gtgagctcatttccactaatccattctatgtctgttatctatcatctatc
tatctatctatctatctatctatctatctatctatctatctatctatcta
tatctatcatctaactatcatccatatccataattatataattattttct
acttcattttctgacaaaactgactaagccataatctagcatccttccaa
aactcagtgtcttgacatatgcattgtatcttgttttacaaattatagga
gcctggtgctcttttcttgggtattttacctaatac

tggaaatagttctacctgaggacccagctatactacacctgggcatatac
acaaaagatgcttcaatatatgacaaggacatatgctctactattttcat
agcagccttatttataatagtcagaagctggaaacaatctaaatgtctct
aaacagaggaatggacacagaaaatgtggtacatttacacaatggagtat
tactcagccattaaaaacaatgatttcatgaaatttgcaggcaaatggat
ggaacttgaaaacgtcatcctgaatgaggtaacacattcacaaaagaaca
cacatggtatgtactcactgataagtggatattagccaaaaagaagctca
gaatacccacaatacaactcagaccatatgaaacccaagaagaaagaaga
tcacaccaaagtgtgaatacaacagtcctactcagtagggtgaagagaat
aatctctgggaagtagaaagagagaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49604284_49605427
seq2: B6Ng01-203L12.b_39_1174 (reverse)

seq1  GTATTA-GTAAAATA-CCAAG-AAAGAGCA-CAGCCTCTTATAATTTGTA  46
      |||||| |||||||| ||||| |||||||| ||| ||| |||||||||||
seq2  GTATTAGGTAAAATACCCAAGAAAAGAGCACCAGGCTCCTATAATTTGTA  50

seq1  AAACAAGATACAATGCATATGTCAAGAACACTGAGTTTTGGGAAGATGCT  96
      |||||||||||||||||||||||||| |||||||||||||| | ||||||
seq2  AAACAAGATACAATGCATATGTCAAG-ACACTGAGTTTTGGAAGGATGCT  99

seq1  AGATTATGGCTTTAGTCAGTTTTTGTCAGAAAATGAAGTAGAAAATAATT  146
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  AGATTATGGC-TTAGTCAG-TTTTGTCAGAAAATGAAGTAGAAAATAATT  147

seq1  ATATAATTATGGATATGGATGATAGTTAGATGATAGATAATAGATAGATA  196
      ||||||||||||||||||||||||||||||||||||||         |||
seq2  ATATAATTATGGATATGGATGATAGTTAGATGATAGAT---------ATA  188

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  238

seq1  TAGATGATAGATAACAGACATAGAATGGATTAGTGGAAATGAGCTCACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATAGATAACAGACATAGAATGGATTAGTGGAAATGAGCTCACAA  288

seq1  TTGCGGAGACTAAGAAGTCCTATTAAATGCTCTGTTTTAGCAGTAGGATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGAGACTAAGAAGTCCTATTAAATGCTCTGTTTTAGCAGTAGGATT  338

seq1  AGGGAAGTGGCTTCATTTGGCTGTTCAAGTCTGAATAACTTGGGACAATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGCTTCATTTGGCTGTTCAAGTCTGAATAACTTGGGACAATG  388

seq1  GGGCTAGGTTCAATGGCTTGGTTCAAGGTCAAAAGCCAGAGAACCCAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGTTCAATGGCTTGGTTCAAGGTCAAAAGCCAGAGAACCCAGGA  438

seq1  CTCTTCTGTTCAAGTTTCAAAATAGAAAGACTAGACAGTCAAAAGTTCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTTCAAGTTTCAAAATAGAAAGACTAGACAGTCAAAAGTTCTC  488

seq1  ATATTAAAGGGCAAGAGAAGAGGGGTATCTAAGCTTCAGGAGAAGAGGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGGGCAAGAGAAGAGGGGTATCTAAGCTTCAGGAGAAGAGGTG  538

seq1  TGACCTCTCCTTTTCTCTGCCTTTTGTTCTGTCAGAGACACCACTTGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTCCTTTTCTCTGCCTTTTGTTCTGTCAGAGACACCACTTGCTG  588

seq1  CATGGTACCTACTCAGTGTGGGACAAATTTTCTTCACTCTGTCCCTGCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACCTACTCAGTGTGGGACAAATTTTCTTCACTCTGTCCCTGCCC  638

seq1  CCACAAATCCATCTCTAATGGACCATCCATCTCATGGACCTTTCTAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATCCATCTCTAATGGACCATCCATCTCATGGACCTTTCTAGAAA  688

seq1  CATCACATTCACAGCTACCTATGAGCTCTTTAATCCAAGCAAATTGACAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATTCACAGCTACCTATGAGCTCTTTAATCCAAGCAAATTGACAC  738

seq1  TTTGAGCGACTGTAGTTGTGTCAGTTGATTAAAACCACTATTGACTAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCGACTGTAGTTGTGTCAGTTGATTAAAACCACTATTGACTAAAA  788

seq1  TTCTGAATTTCTCCAATTAGCATCAGGTCTTATGGCAGCAGCAGCAATGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTTCTCCAATTAGCATCAGGTCTTATGGCAGCAGCAGCAATGA  838

seq1  CCATGATGAGAGAGATTTAAGAACAGCCTGTTTTCGCTAAGAACTGCTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGAGAGAGATTTAAGAACAGCCTGTTTTCGCTAAGAACTGCTGT  888

seq1  AATAAAACAAGTCCCTCGCGGTGAGCTTGGATGCAGATTCCTGAACTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAGTCCCTCGCGGTGAGCTTGGATGCAGATTCCTGAACTTAA  938

seq1  CCTCACCCATATGGAATCTTGGGAGTCACCACCCTTTGGTCCAATGAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCATATGGAATCTTGGGAGTCACCACCCTTTGGTCCAATGAAAG  988

seq1  AGACCCAGAGGATTTAGATTACTGTTGTATGGTAGAGAAAATTCCAATGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAGGATTTAGATTACTGTTGTATGGTAGAGAAAATTCCAATGG  1038

seq1  CTCATTGCAGGTCAACAGCATGAATTTGGCTGCCAGCACTACAGGAGAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCAGGTCAACAGCATGAATTTGGCTGCCAGCACTACAGGAGAGG  1088

seq1  GTGGGAAGCATCACACGGATACTTCCTCTAATATTTTGAGTAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGCATCACACGGATACTTCCTCTAATATTTTGAGTAGAATTC  1136


seq1: chr2_100285400_100285437
seq2: B6Ng01-203L12.g_511_548 (reverse)

seq1  TCCCTCTCGCCATCTACTTCCCAGAGATTATTCTCTTC  38
      |||||||| |  ||||||||||||||||||||||||||
seq2  TCCCTCTCTCTTTCTACTTCCCAGAGATTATTCTCTTC  38


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