BAC Information

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BAC

Clone NameB6Ng01-204H11
Chromosome19 (Build37)
Map Location 35,817,500 - 35,818,576
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204H11.bB6Ng01-204H11.g
ACCGA024406GA024407
length1,2001,096
definitionB6Ng01-204H11.b B6Ng01-204H11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggatttgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatcccatgagcatgggagattttttccat
cttctgagatcttctttaaatttctttcttcagagatttgaaagttttta
tcatacagatctttcaccttccttagttagagtcacgccaagatattttt
atattatttgtgactattgagaagggtgttgtttccctaattttctttct
cagccttgtttattcttttgtatagagaaagggcccatttgactttgttt
gagttttattttatattccagctactttcaccgaaagctgttatcagttt
aaggaggtttctctggttagaattttttaagggtccacttatcatatacc
tatccatatctatcgtgcacaaagttgatatatgtagtaccttctctctc

gaattctacatgactttcctagcccagacttattagaaaaagatgagatc
aagtgggattgtccctgtatcatccaacaagctggatagctgctctctcc
ttttaaataattgggaaatgctggatgtaaattcatttgaaattagcata
atttgctatgttttttttattttaatatgcaggaaatagtataccaggct
ccattatgagctacagaatgatttcattagcataattgaaacagatgcta
tttcttatgataataggtaaatgtgcaaaaagatattaggctactgtctt
cagagttttttatgctgcaatgtgttttcagacaaacaactttaacaatg
atgtccaggagcatacaatctaaaggataataacacaaattaaaaatttt
cagccaagttaggcctcccttgggaagcaccaggttagaaaattagtcat
tttttgtttgcaaattaatgagatataattggaataaattgtttccttta
atatcttagcacaatggctatagtcctatgaataactagactttgtttca
atgttgtaaaataggttcaaaatgctgggaacctaaaatgagtttgattt
caaaattgggagtgtatgtatgtgtatagggaaatatcttgtgacaattc
cagtatattaaaatattgtttaaactgctttcatgtacacacacacacaa
acacacacacatattacctatagtacatcaattaataccatgtgcagact
tgggtgggactcatggctccagctgcatatgtagcagaggatggcctagt
aggtcatcgattactggaggagacccccttggtctgtgaaggttctatgc
tttcagtattatttaagaaaatgacagggacacccggaagcatgggcctg
cagaataaattaagcagggacataggggctcacagaggactggaaaaagc
aattaaggagccttgcatggctttggtatttttctagagctccttgacca
ggtggtgaggaagggaatggtctctgacttcctttggcctggctcttcag
aaacccctttcttacatattgggtttgccttcaccaacctttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35817500_35818576
seq2: B6Ng01-204H11.g_67_1162 (reverse)

seq1  CATG-AAGGCTGGTG-AGGC-AACCCAATA-GGAAGAAAGGGG--TCTGA  44
      |||| |||| ||||| |||| ||||||||| | ||||||||||  |||||
seq2  CATGAAAGGTTGGTGAAGGCAAACCCAATATGTAAGAAAGGGGTTTCTGA  50

seq1  AGAG-CAGGCAAAAG--AGTCAGAGA-CATTCCC-TCCTCA-CAC--TGT  86
      |||| ||||| ||||  ||||||||| ||||||| |||||| |||   ||
seq2  AGAGCCAGGCCAAAGGAAGTCAGAGACCATTCCCTTCCTCACCACCTGGT  100

seq1  CAA-GAGCTCTAGAAAAATACC-AAGCCATGC-AGGCTCCTTAATTGCTT  133
      ||| |||||||||||||||||| ||||||||| |||||||||||||||||
seq2  CAAGGAGCTCTAGAAAAATACCAAAGCCATGCAAGGCTCCTTAATTGCTT  150

seq1  TTT-CAGT-CTCTGTGAGCCCCTATGTTCCCTGCTTAATTTATTCTGCAG  181
      ||| |||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCCAGTCCTCTGTGAGCCCCTATG-TCCCTGCTTAATTTATTCTGCAG  199

seq1  G-CCATGCTTCCGGGTGTCCTTGTCATTTTCTTAAATAATACTG-AAGCA  229
      | |||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  GCCCATGCTTCCGGGTGTCCCTGTCATTTTCTTAAATAATACTGAAAGCA  249

seq1  TAGAACCTTCACAGGACCAAGGGGGTCTCCTCCAGTAATCGATGACCTAC  279
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTCACA-GACCAAGGGGGTCTCCTCCAGTAATCGATGACCTAC  298

seq1  TAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATGAGTCCCACCCAAG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATGAGTCCCACCCAAG  348

seq1  TCTGCACATGGTATTAATTGATGTACTATAGGTAATATGTGTGTGTGTTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACATGGTATTAATTGATGTACTATAGGTAATATGTGTGTGTGTTT  398

seq1  GTGTGTGTGTGTACATGAAAGCAGTTTAAACAATATTTTAATATACTGGA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTACATGAAAGCAGTTTAAACAATATTTTAATATACTGGA  448

seq1  ATTGTCACAAGATATTTCCCTATACACATACATACACTCCCAATTTTGAA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACAAGATATTTCCCTATACACATACATACACTCCCAATTTTGAA  498

seq1  ATCAAACTCATTTTAGGTTCCCAGCATTTTGAACCTATTTTACAACATTG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTCATTTTAGGTTCCCAGCATTTTGAACCTATTTTACAACATTG  548

seq1  AAACAAAGTCTAGTTATTCATAGGACTATAGCCATTGTGCTAAGATATTA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTCTAGTTATTCATAGGACTATAGCCATTGTGCTAAGATATTA  598

seq1  AAGGAAACAATTTATTCCAATTATATCTCATTAATTTGCAAACAAAAAAT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAATTTATTCCAATTATATCTCATTAATTTGCAAACAAAAAAT  648

seq1  GACTAATTTTCTAACCTGGTGCTTCCCAAGGGAGGCCTAACTTGGCTGAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTTTCTAACCTGGTGCTTCCCAAGGGAGGCCTAACTTGGCTGAA  698

seq1  AATTTTTAATTTGTGTTATTATCCTTTAGATTGTATGCTCCTGGACATCA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATTTGTGTTATTATCCTTTAGATTGTATGCTCCTGGACATCA  748

seq1  TTGTTAAAGTTGTTTGTCTGAAAACACATTGCAGCATAAAAAACTCTGAA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGTTGTTTGTCTGAAAACACATTGCAGCATAAAAAACTCTGAA  798

seq1  GACAGTAGCCTAATATCTTTTTGCACATTTACCTATTATCATAAGAAATA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGCCTAATATCTTTTTGCACATTTACCTATTATCATAAGAAATA  848

seq1  GCATCTGTTTCAATTATGCTAATGAAATCATTCTGTAGCTCATAATGGAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTTTCAATTATGCTAATGAAATCATTCTGTAGCTCATAATGGAG  898

seq1  CCTGGTATACTATTTCCTGCATATTAAAATAAAAAAAACATAGCAAATTA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTATACTATTTCCTGCATATTAAAATAAAAAAAACATAGCAAATTA  948

seq1  TGCTAATTTCAAATGAATTTACATCCAGCATTTCCCAATTATTTAAAAGG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTTCAAATGAATTTACATCCAGCATTTCCCAATTATTTAAAAGG  998

seq1  AGAGAGCAGCTATCCAGCTTGTTGGATGATACAGGGACAATCCCACTTGA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAGCTATCCAGCTTGTTGGATGATACAGGGACAATCCCACTTGA  1048

seq1  TCTCATCTTTTTCTAATAAGTCTGGGCTAGGAAAGTCATGTAGAATTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTTTTCTAATAAGTCTGGGCTAGGAAAGTCATGTAGAATTC  1096