BAC Information

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BAC

Clone NameB6Ng01-206G24
Chromosome19 (Build37)X (Build37)
Map Location 8,165,849 - 8,166,53467,398,537 - 67,399,608
singlet/doubletsingletsinglet
Overlap geneEG434674
Upstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
Downstream geneLOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206G24.bB6Ng01-206G24.g
ACCGA025851GA025852
length1,0101,079
definitionB6Ng01-206G24.b B6Ng01-206G24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,165,849 - 8,166,534)(67,398,537 - 67,399,608)
sequence
gaattctcataaatcttagcctcagtttacccttattgctaacatctggc
attgtagaaccttgtcacagttactaaagtaatcctaataaattgctatt
actttcatctcagctccaaactttgtctctgtaactccttccatgggtgt
tttgttcccaattctaagaaggggcgaagtgtccacactttgttcttcat
tcttcttgagtttcatgcgtttagcaaattgtatcttatatcttgggtat
tctaaatttctgggctaatatccacttatcagtgagtacatattgtgaga
gttcttttgtgattgggttacctcactcaggatgatgccctccaggttcc
aaccatttgcctaggaatttcataaattcattctttttaatagctgagta
gtactccattgtgtaaatgtaccatattttctggatccattcctctgttg
aggggcatctgggttctttccagcttctggctattataaataaggctgct
atgaacatagtggagcatgtgtccttcttatcggttggaacatcttctgg
atatatgcccaggagagatattgcgggatccttctgtattgctatgtcca
attttctgaggaacctccagactgattcccagagtggttgtacaaacttg
caatcccaccaacaatggaggagtgttcctctttctccacatcttcgcca
gcatctgctgtcacctgaatttttgatcttagccattctgactggtgtga
ggcaagacatgaggagccatccagtaagcaacacccctccatggcttttg
cattaacttctgcctctaggtttctgccctgaattcttgtcctgacatcc
ttcaatgatgaacagtgatttggaagcataagccaaataaaacctttcct
ccccaagttattttgggccatgatgcttaaacaaagcagtgataaaccta
actaagacatatgatatgccaattctcagatttaatatttaggtatattt
gagagcttaa
gaattcctctgaaccctaatttctgtcttcaatttgtctttgaagagact
cttccacaggctaagcctctgaccatgatggtattcaatatttttgtcat
ttgcttgcttagctgcaccagggaaatctgggagttagagaatctctctt
ggaatttttctgtagtctacacctcagctgctaggaaccaacggtttgcg
agacaggggggccaggggggagggataatcacatggacagctgttttgta
tgcaaatgtcacagattaatatgaagcaggagactcagagtgatatcgtg
agattgagaagacataacataggacttgttcctgggaataatgagaaaat
tacttttcctatgctagatgtgaacaggaagatctacctcacttttctgt
aagtaccagtcaaaaatgtgagctatggagcaaaagtcttaaattcagta
ggtagaaataatggtagaatcattcctctctgttacatttaagaacattg
gagtatgggaaagtgtagaatggaagaaaatttcaatcttcaatacaagc
tcctagaattgcttcactgggaaaggaatcttctctcacctcacctatct
actactagcctcatctactgatggggcaccagtaggtgaacattgtctga
actggataagaagtagataggtaatagtgattccttctcaggatccaggg
ccataaacacccacagcctctgttgtaaggcaaggttataaacacattga
acccatcatcccatgacaaagcagtagtctgaacaaaagcattgacactg
aaatacttgggggttgccctggaatggagtagagagcccatctgtgtatg
cagaggtaaatagaagccaggaatcagggacacaggaatgagagacttgg
ggaccagattggggggattacttagattaattgttttaaatatttggggc
tatatcctataatcaatttgaactacattctttacttcataaaagctgtt
agttctatgggtgatgagatcaacactggatctgcaatccacccttgcag
cagtgtgtgtaacagacttaatggacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8165849_8166534
seq2: B6Ng01-206G24.b_151_731 (reverse)

seq1  GAAGAAAGAGGAACACTCCTCCATTGTTTGTGGGATTGAAAGCTTGTATA  50
      | |||||||||||||||||||||||||| ||||||||| ||| ||||| |
seq2  GGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGTTTGTACA  50

seq1  ACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTAC  100
      |||||||||| |||||||||||  ||||||||||||||||||||||| | 
seq2  ACCACTCTGGGAATCAGTCTGGAGGTTCCTCAGAAAATTGGACATAGCAA  100

seq1  TACCAGAA-GATCCAGCAATACCTCTTCTGGGCATATATCCAGAGGATGA  149
      || ||||| ||||| |||||| |||| ||||||||||||||||| |||| 
seq2  TA-CAGAAGGATCCCGCAATATCTCTCCTGGGCATATATCCAGAAGATGT  149

seq1  CCCAACCGGTAAGAAGGACACATGATCCACTATGTTCATAGCAGCCTTAT  199
       ||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TCCAACCGATAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTAT  199

seq1  TTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAAAGGAA  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAA  249

seq1  TGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCCGCTAT  299
      ||||| |||||||| ||||||||||||||||||||||||||||| |||||
seq2  TGGATCCAGAAAATATGGTACATTTACACAATGGAGTACTACTCAGCTAT  299

seq1  TAAAAAGAATGAATTTAAGAAATTTCTAGGCAAATGGATGG-ACCTGGAG  348
      ||||||||||||||||| |||||| |||||||||||| ||| ||||||||
seq2  TAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGAACCTGGAG  349

seq1  GGCATCATCCCGAGTGAGGTAACCCAATCACAAAGGAACTCTCACAATAT  398
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCTCACAATAT  399

seq1  GTACTCACTGATAAGTGGATATTAGCCCTGAATCTTAGGATATCCAAGAT  448
      |||||||||||||||||||||||||||| |||  |||| ||| |||||||
seq2  GTACTCACTGATAAGTGGATATTAGCCCAGAAATTTAGAATACCCAAGAT  449

seq1  ATAAGATATAATTTGCTAAACACATTTAACTCAAG-AGAA-CAAGACCAA  496
      |||||||| |||||||||||| |||  |||||||| ||||  |||| |||
seq2  ATAAGATACAATTTGCTAAACGCATGAAACTCAAGAAGAATGAAGAACAA  499

seq1  AGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAACACCCATGGA  546
      ||||||||||||| ||||||||||||||| || |||||||||||||||||
seq2  AGTGTGGACACTTCGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGA  549

seq1  AGGAGTTACAGAGACAAAATTTGGAAGTGA-ATCCATGAAACTCAAGAAG  595
      |||||||||||||||||| ||||||  ||| |                  
seq2  AGGAGTTACAGAGACAAAGTTTGGAGCTGAGA------------------  581

seq1  GAAGACCCAAGTGTGGACTCTTTGCCCCTTCTTAGAATTGGGAACAAGAC  645
                                                        
seq2  --------------------------------------------------  581

seq1  ATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGA  686
                                               
seq2  -----------------------------------------  581

seq1: chrX_67398537_67399608
seq2: B6Ng01-206G24.g_66_1144

seq1  GAATTCCTCTGAACCCTAATTTCTGTCTTCAATTTGTCTTTGAAGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGAACCCTAATTTCTGTCTTCAATTTGTCTTTGAAGAGACT  50

seq1  CTTCCACAGGCTAAGCCTCTGACCATGATGGTATTCAATATTTTTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGGCTAAGCCTCTGACCATGATGGTATTCAATATTTTTGTCAT  100

seq1  TTGCTTGCTTAGCTGCACCAGGGAAATCTGGGAGTTAGAGAATCTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTTAGCTGCACCAGGGAAATCTGGGAGTTAGAGAATCTCTCTT  150

seq1  GGAATTTTTCTGTAGTCTACACCTCAGCTGCTAGGAACCAACGGTTTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTTCTGTAGTCTACACCTCAGCTGCTAGGAACCAACGGTTTGCG  200

seq1  AGACAGGGGGGCCAGGGGGGAGGGATAATCACATGGACAGCTGTTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGGGGCCAGGGGGGAGGGATAATCACATGGACAGCTGTTTTGTA  250

seq1  TGCAAATGTCACAGATTAATATGAAGCAGGAGACTCAGAGTGATATCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGTCACAGATTAATATGAAGCAGGAGACTCAGAGTGATATCGTG  300

seq1  AGATTGAGAAGACATAACATAGGACTTGTTCCTGGGAATAATGAGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGAAGACATAACATAGGACTTGTTCCTGGGAATAATGAGAAAAT  350

seq1  TACTTTTCCTATGCTAGATGTGAACAGGAAGATCTACCTCACTTTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCCTATGCTAGATGTGAACAGGAAGATCTACCTCACTTTTCTGT  400

seq1  AAGTACCAGTCAAAAATGTGAGCTATGGAGCAAAAGTCTTAAATTCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCAGTCAAAAATGTGAGCTATGGAGCAAAAGTCTTAAATTCAGTA  450

seq1  GGTAGAAATAATGGTAGAATCATTCCTCTCTGTTACATTTAAGAACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATAATGGTAGAATCATTCCTCTCTGTTACATTTAAGAACATTG  500

seq1  GAGTATGGGAAAGTGTAGAATGGAAGAAAATTTCAATCTTCAATACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGGAAAGTGTAGAATGGAAGAAAATTTCAATCTTCAATACAAGC  550

seq1  TCCTAGAATTGCTTCACTGGGAAAGGAATCTTCTCTCACCTCACCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAATTGCTTCACTGGGAAAGGAATCTTCTCTCACCTCACCTATCT  600

seq1  ACTACTAGCCTCATCTACTGATGGGGCACCAGTAGGTGAACATTGTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAGCCTCATCTACTGATGGGGCACCAGTAGGTGAACATTGTCTGA  650

seq1  ACTGGATAAGAAGTAGATAGGTAATAGTGATTCCTTCTCAGGATCCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAAGAAGTAGATAGGTAATAGTGATTCCTTCTCAGGATCCAGGG  700

seq1  CCATAAACACCCACAGCCTCTGTTGTAAGGCAAGGTTATAAACACATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACACCCACAGCCTCTGTTGTAAGGCAAGGTTATAAACACATTGA  750

seq1  ACCCATCATCCCATGACAAAGCAGTAGTCTGAACAAAAGCATTGACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCATCCCATGACAAAGCAGTAGTCTGAACAAAAGCATTGACACTG  800

seq1  AAATACTTGGGGGTTGCCCTGGAATGGAGTAGAGAGCCCATCTGTGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTGGGGGTTGCCCTGGAATGGAGTAGAGAGCCCATCTGTGTATG  850

seq1  CAGAGGTAAATAGAAGCCAGGAATCAGGGACACAGGAATGAGAGACTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAAATAGAAGCCAGGAATCAGGGACACAGGAATGAGAGACTTGG  900

seq1  GGACCAGATT-GGGGGATTACTTAGATTAATTGTTTTAAATATTT-GGGC  948
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GGACCAGATTGGGGGGATTACTTAGATTAATTGTTTTAAATATTTGGGGC  950

seq1  TATATCCTAATATCAATTTGAACTACA-TCTTTACTTCATAAAAGCTGTT  997
      |||||||||  |||||||||||||||| ||||||||||||||||||||||
seq2  TATATCCTATAATCAATTTGAACTACATTCTTTACTTCATAAAAGCTGTT  1000

seq1  AG-TCTATGGGTGATGAGATCAACACTGGATCTGCAAT-CACCCTGGCAG  1045
      || ||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AGTTCTATGGGTGATGAGATCAACACTGGATCTGCAATCCACCCTTGCAG  1050

seq1  CA--GTGTGTAACAGACTAAATGGACAAA  1072
      ||  |||||||||||||| ||||||||||
seq2  CAGTGTGTGTAACAGACTTAATGGACAAA  1079