BAC Information

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BAC

Clone NameB6Ng01-207B06
Chromosome19 (Build37)19 (Build37)
Map Location 33,437,981 - 33,439,16433,773,030 - 33,773,631
singlet/doubletsingletsinglet
Overlap gene6530404N21Rik
Upstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207B06.bB6Ng01-207B06.g
ACCGA026325GA026326
length1,192897
definitionB6Ng01-207B06.b B6Ng01-207B06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,437,981 - 33,439,164)(33,773,030 - 33,773,631)
sequence
gaattccaataacgggagcagtagtgaagatttaaatgaaaatatgcaca
gctataatcttggcacttggtagcttgctcactcaggtagcttgctgtga
gtttgggtccagccttgtcatcataaatgagttcaagccaacctacttag
taagactctgtatcaaaagaatctaaagaaataatagtagtagtaattat
aatagtaaataaaattaattgagaggcttaattggagggtgatatttatt
ttctgacttaaatacttttagcataatgcagccacaatgctcttccaact
gaccacattgtcttctaatgcatttgaaaaaccagtggctctgaggagga
gactttgctgagacctcactaatgttcacatggctgtggttagttacatc
ttgttgatctaatctccattggttctgcattgtctacactgctctgtttt
gagaacagccctctatctaaataatatgccacatgcttccgatgcaaggc
ttttcacagatgctgaataccacatcagtctccacctgctgagcagctta
tgcactgaacttcttcataacttttagaaatgttttccgaataagctact
gtgaacaatgtggaaataaaaatctgatcctttaaaagtgaatcccaaag
ctaaagtgtatttctcaatactctccctcactccggccctttaacactgt
tgggaactcttcctgtgacttccatttcagttctacaggcagcaagtcaa
attatctgcattttctaattatcttttaatttcactcatggccctgaacc
agtttcctctggttttgtctctatttattttgttactagtcacatgtctg
tatggatgattccagataccagcaggtgactattttgctatattgatatg
agcaggccaatctactaatttgtagaacaagcattgagatcaagtatttt
gaggagtttggtgccattttagtaaatttggcgatttaagaaggttagct
aagcaatttaaaactcacattcagcaaacatcattagataaccagtgttg
ttcaacttttaaagaaaatacaacgtatatgttagccaagctaccccttt
gactatagcccccttcttgtacgctcctgatgctgaaacatacaggaaat
gacatcatggcaactggtccagagatttccattccaacacat
gaattctgttgctgatgctcgcatctatggttccagatttctttcctagg
gtttctatctccagtgttgcctcactttgggttttatttattgtgtctac
ttccctttttaggtcttggatggttttattcaattccatcacctgtttgg
tcatgttttcctacaattctttaagggatttttgtgcttcctctttaagg
tcttctacctgtttagcagtgttctcctgtatttctttaagtgagttatt
aaagtccttcttgatgtcctctaccatcatcatgagatatgcttttaaat
ccgggtctagcttttcgggtgtgttggggtgccctggactgggcgaggtg
ggagtgctggattctgatgatggttagtggtcttggtttctgttagtaag
attcttacctttaccttttggcatctggtaatctctggagttagttgtta
tatatgtctctggttagagattgttcctctcgtgattctgttagcctttg
tcagcagacctgggagactagctctctcctctaagtgtgagtggtcagag
cactctctgcagacaagctctcctcttacagggaaggtgcacagatatct
ggcttttggacctccctcctggccgaagataaaggccaaaaacaggacct
gtctcagaagctgtgttgcttcggcctgtcacagaagcttctgtagtcca
cactctcacctgcacagactagtctcagaggcatctgagaaccaagatgg
ctcccccaggtgctcctgcaaagccctcccgggcagggaggacacctctt
cctcttggcagggaaggtgcccggatgtctggagcccgaaaaggtagctg
ccttcaaaagctctgtgggctcccgcctgttccagaagctgtttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_33437981_33439164
seq2: B6Ng01-207B06.b_43_1234

seq1  GAATTCCAATAACGGGAGCAGTAGTGAAGATTTAAATGAAAATATGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAACGGGAGCAGTAGTGAAGATTTAAATGAAAATATGCACA  50

seq1  GCTATAATCTTGGCACTTGGTAGCTTGCTCACTCAGGTAGCTTGCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATCTTGGCACTTGGTAGCTTGCTCACTCAGGTAGCTTGCTGTGA  100

seq1  GTTTGGGTCCAGCCTTGTCATCATAAATGAGTTCAAGCCAACCTACTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTCCAGCCTTGTCATCATAAATGAGTTCAAGCCAACCTACTTAG  150

seq1  TAAGACTCTGTATCAAAAGAATCTAAAGAAATAATAGTAGTAGTAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCTGTATCAAAAGAATCTAAAGAAATAATAGTAGTAGTAATTAT  200

seq1  AATAGTAAATAAAATTAATTGAGAGGCTTAATTGGAGGGTGATATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAATAAAATTAATTGAGAGGCTTAATTGGAGGGTGATATTTATT  250

seq1  TTCTGACTTAAATACTTTTAGCATAATGCAGCCACAATGCTCTTCCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTAAATACTTTTAGCATAATGCAGCCACAATGCTCTTCCAACT  300

seq1  GACCACATTGTCTTCTAATGCATTTGAAAAACCAGTGGCTCTGAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATTGTCTTCTAATGCATTTGAAAAACCAGTGGCTCTGAGGAGGA  350

seq1  GACTTTGCTGAGACCTCACTAATGTTCACATGGCTGTGGTTAGTTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCTGAGACCTCACTAATGTTCACATGGCTGTGGTTAGTTACATC  400

seq1  TTGTTGATCTAATCTCCATTGGTTCTGCATTGTCTACACTGCTCTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATCTAATCTCCATTGGTTCTGCATTGTCTACACTGCTCTGTTTT  450

seq1  GAGAACAGCCCTCTATCTAAATAATATGCCACATGCTTCCGATGCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCCCTCTATCTAAATAATATGCCACATGCTTCCGATGCAAGGC  500

seq1  TTTTCACAGATGCTGAATACCACATCAGTCTCCACCTGCTGAGCAGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGATGCTGAATACCACATCAGTCTCCACCTGCTGAGCAGCTTA  550

seq1  TGCACTGAACTTCTTCATAACTTTTAGAAATGTTTTCCGAATAAGCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAACTTCTTCATAACTTTTAGAAATGTTTTCCGAATAAGCTACT  600

seq1  GTGAACAATGTGGAAATAAAAATCTGATCCTTTAAAAGTGAATCCCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAATGTGGAAATAAAAATCTGATCCTTTAAAAGTGAATCCCAAAG  650

seq1  CTAAAGTGTATTTCTCAATACTCTCCCTCACTCCGGCCCTTTAACACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGTATTTCTCAATACTCTCCCTCACTCCGGCCCTTTAACACTGT  700

seq1  TGGGAACTCTTCCTGTGACTTCCATTTCAGTTCTACAGGCAGCAAGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTCTTCCTGTGACTTCCATTTCAGTTCTACAGGCAGCAAGTCAA  750

seq1  ATTATCTGCATTTTCTAATTATCTTTTAATTTCACTCATGGCCCTGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGCATTTTCTAATTATCTTTTAATTTCACTCATGGCCCTGAACC  800

seq1  AGTTTCCTCTGGTTTTGTCTCTATTTATTTTGTTACTAGTCACATGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTCTGGTTTTGTCTCTATTTATTTTGTTACTAGTCACATGTCTG  850

seq1  TATGGATGATTCCAGATACCAGCAGGTGACTA-TTTGCTATATTGATATG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATGGATGATTCCAGATACCAGCAGGTGACTATTTTGCTATATTGATATG  900

seq1  AGCAGGCCAATCTAC--AATTGTAGAACAAGCATTTGAGATCAAGTA-TT  946
      |||||||||||||||  | |||||||||||||| ||||||||||||| ||
seq2  AGCAGGCCAATCTACTAATTTGTAGAACAAGCA-TTGAGATCAAGTATTT  949

seq1  TGAGGAG-TTGGTGCCA-TTTAGTAAATTTGGCGATTTAAGAA-GTTAGC  993
      ||||||| ||||||||| ||||||||||||||||||||||||| ||||||
seq2  TGAGGAGTTTGGTGCCATTTTAGTAAATTTGGCGATTTAAGAAGGTTAGC  999

seq1  TAAAGCAATTTTAAAACTCACATTCAGCAAACATCATTAGATAACCAGTT  1043
      | |||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  T-AAGCAA-TTTAAAACTCACATTCAGCAAACATCATTAGATAACCAGTG  1047

seq1  GTGTTC-ACTTTTAAAG-AAATAC-ACGTATATGTAGCCCAGGCTA-CCC  1089
       ||||| |||||||||| |||||| ||||||||||   ||| |||| |||
seq2  TTGTTCAACTTTTAAAGAAAATACAACGTATATGTTAGCCAAGCTACCCC  1097

seq1  TTGAACTAATAGCCC---TCTTGTACAGCTTCCTTGATGCTGAAACA-AC  1135
      ||  ||| |||||||   |||||||| |||  | ||||||||||||| ||
seq2  TTTGACT-ATAGCCCCCTTCTTGTAC-GCT--CCTGATGCTGAAACATAC  1143

seq1  AGGAATATGACATCATGGCAACTTGCACAGAGTTTTCCATTCC-ACACAT  1184
      ||||| ||||||||||||||||| |  ||||| |||||||||| ||||||
seq2  AGGAA-ATGACATCATGGCAACTGGTCCAGAGATTTCCATTCCAACACAT  1192

seq1: chr19_33773030_33773631
seq2: B6Ng01-207B06.g_63_668 (reverse)

seq1  AAAGCCAGATATCTGTGCACCTTCTCTGTAAGAGGAGAGCTTGTCTGCAG  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGCCAGATATCTGTGCACCTTCCCTGTAAGAGGAGAGCTTGTCTGCAG  50

seq1  AGTGTACTCTGACCACTCACACTTAGAGGAGAGAGCTAGTCTCCCAGGTC  100
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTCTGACCACTCACACTTAGAGGAGAGAGCTAGTCTCCCAGGTC  100

seq1  TGCTGATAAAGGCTAACAGAATCATGAGAGGAACAATCTCTAACCAGAGA  150
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTGACAAAGGCTAACAGAATCACGAGAGGAACAATCTCTAACCAGAGA  150

seq1  CATCTATAACAACTAACTCCAGAGATTACCAGATGCCAAAAGGTAAAGGT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAACAACTAACTCCAGAGATTACCAGATGCCAAAAGGTAAAGGT  200

seq1  AAGAATCTTACTAACAGAAACCAAGACCACTAACCATCATCAGAATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTTACTAACAGAAACCAAGACCACTAACCATCATCAGAATCCAG  250

seq1  CACTCCCACCTCACCCAGTCCAGGGCACCCCAACACACCTGAAAAGCTAG  300
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CACTCCCACCTCGCCCAGTCCAGGGCACCCCAACACACCCGAAAAGCTAG  300

seq1  ACCCGGATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAG  350

seq1  GACTTTAATAACTC----AAAGAAATACAGGAGAACACTGCTAAACAGGT  396
      ||||||||||||||    ||||||||||||||||||||||||||||||||
seq2  GACTTTAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAACAGGT  400

seq1  AGAAGACCTTAAAGAGGAAGCACAAAAATCCCTTAAAGAATTGTAGGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAGACCTTAAAGAGGAAGCACAAAAATCCCTTAAAGAATTGTAGGAAA  450

seq1  ACACGACCAAACAGGTGATGGAATTGAATAAAACCATCCAAGACCTAAAA  496
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCAAACAGGTGATGGAATTGAATAAAACCATCCAAGACCTAAAA  500

seq1  AGGGAAGTAGACACAATAAATAAAACCCAAAGTGAGGCAACACTGGAGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTAGACACAATAAATAAAACCCAAAGTGAGGCAACACTGGAGAT  550

seq1  AGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCGAGCATCAGCAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCGAGCATCAGCAACA  600

seq1  GAATTC  602
      ||||||
seq2  GAATTC  606