BAC Information

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BAC

Clone NameB6Ng01-207G06
Chromosome19 (Build37)
Map Location 7,509,145 - 7,606,568
singlet/doubletdoublet
Overlap geneRtn3, LOC100039547, 5730596K20Rik
Upstream geneNrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik
Downstream geneHrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207G06.bB6Ng01-207G06.g
ACCGA026554GA026555
length1,0921,099
definitionB6Ng01-207G06.b B6Ng01-207G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,509,145 - 7,510,233)(7,605,477 - 7,606,568)
sequence
gaattcaaagctgtttctagctgttactatatagtactgaaacatggaca
caatggctgactgagggctgccctgggcaagctattctgtgccctgctct
ggatttatagctctggatttattagccttaagtgtgagtctctagtcagt
taaaagttctcagatactaacctaattacttcttagggtgatggcaagta
tttagggactgcttttgccatctatctgtaagagacaggttagaacttca
gacatgtgctatctcagcaaacttacttgaatggatgtccttcttctgac
ttctgcacagcttgaatgacagacttatagactctgaagctgatggtgac
agagagaagagccaggatgaggtaagagaccacactgataacactgaagg
ctgccagagagagcagcatgatcagtgtggtgccaaagacaaacccagtc
ttcttcacatctcgccagaaaatcagatcgtgcactgccaagagaggggg
aatagaagttagagaacccaggaccaccttggctgtgctgtgctttactg
gctgccatctatctccctagtatcctggcacctctttacttttgattttg
ttattatgggttgttttttgtaacccaacctttaactcctgatctcctac
gagctgggattgtaggcctgtgacacatatctgactgtttttattcttaa
gacacagggtcttgctaaactgtccagccttacaaaaatggacaaggcct
ctagagtttggacagatgagagtctgagtctttggccatttctacctgtg
ctacttttcaccattctaagccattctccattgtaaagtgaagaaaatgg
caccatctccctaaagctgtttcaagtccagtgcaggtagagtgtattat
tacctacatgcaacaaacttatgtgatttactaggaaggagaggttttga
gattcctgctgggaaacttgagttccagggtaggtgggattttgcaattc
gggagaaaaacaggttccagtcagtgccaatgatgactgagctcgataca
cgtactgcatgaaggagaacctaaaagggtcagcgctagcag
gaattctaggtgcttctcttctaaaatatctggagacaaataaggtttct
ctcccccacaaatctaaaaataacaaaaacacatgctgaatattcttgta
catgccaaataaagtaagtaaaaagtcacagtaaagatttgaatgctctt
aagagtttagaaaaaaagcttagaaattaacttcagaaaatattcaagag
agactaagatataacctatatgttagagtacttgcctagtatgcacagag
cccttggtttaatcccaatatcatacaaatcagtatggtggtacatatct
gtaatcccaaccttccacaagtagttacagaaggatcagaaaattcaaag
tcatcctcagctacatgaaatgtttgaggcccacctaagctacgtgagat
tctgcttaaacgggaagtcagaaaagacaaatatcccagaccaaagccag
acatattagtatatgcctataatcccagcccttagaaagcagaggcaaga
gatccatacaagcttaatgtgaaattggtcaacataacatatttcaggcc
aaccacagccacaaagcaagtctttgtataaaaatataaagattaattaa
aagcttggttagaaatggttaagaaccagacactaggaggctggagagat
ggcttagtagttaagaacacttgctgctcttgcaggaccagagttcagtt
cccagcacccacatcataaagctcaaaacctcctgtgactagggctccag
aagatctaatgtctgactgtgttttcaggtacccactccagagatataca
cataaataaataataaatcttaacagaagagatatggcagcacacatttg
tctaggacttaagagactgaggcaaaagaattgctatgaatctgaggcca
acttggactacatatcacaacttctgcctgacaaaaaataaaaataacta
gaagatccaaattacatagaaagaactctgtttcaaaagaaaaagaaaga
ttaaaccttaaatagtataattaggagcatcccattacctaggtgacctg
aaagaacagctttctctactcatcatcttaagaatgcgacaggctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7509145_7510233
seq2: B6Ng01-207G06.b_32_1123

seq1  GAATTCAAAGCTGTTTCTAGCTGTTACTATATAGTACTGAAACATGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTGTTTCTAGCTGTTACTATATAGTACTGAAACATGGACA  50

seq1  CAATGGCTGACTGAGGGCTGCCCTGGGCAAGCTATTCTGTGCCCTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGACTGAGGGCTGCCCTGGGCAAGCTATTCTGTGCCCTGCTCT  100

seq1  GGATTTATAGCTCTGGATTTATTAGCCTTAAGTGTGAGTCTCTAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATAGCTCTGGATTTATTAGCCTTAAGTGTGAGTCTCTAGTCAGT  150

seq1  TAAAAGTTCTCAGATACTAACCTAATTACTTCTTAGGGTGATGGCAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTCTCAGATACTAACCTAATTACTTCTTAGGGTGATGGCAAGTA  200

seq1  TTTAGGGACTGCTTTTGCCATCTATCTGTAAGAGACAGGTTAGAACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGACTGCTTTTGCCATCTATCTGTAAGAGACAGGTTAGAACTTCA  250

seq1  GACATGTGCTATCTCAGCAAACTTACTTGAATGGATGTCCTTCTTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGCTATCTCAGCAAACTTACTTGAATGGATGTCCTTCTTCTGAC  300

seq1  TTCTGCACAGCTTGAATGACAGACTTATAGACTCTGAAGCTGATGGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACAGCTTGAATGACAGACTTATAGACTCTGAAGCTGATGGTGAC  350

seq1  AGAGAGAAGAGCCAGGATGAGGTAAGAGACCACACTGATAACACTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGAGCCAGGATGAGGTAAGAGACCACACTGATAACACTGAAGG  400

seq1  CTGCCAGAGAGAGCAGCATGATCAGTGTGGTGCCAAAGACAAACCCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGAGAGCAGCATGATCAGTGTGGTGCCAAAGACAAACCCAGTC  450

seq1  TTCTTCACATCTCGCCAGAAAATCAGATCGTGCACTGCCAAGAGAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACATCTCGCCAGAAAATCAGATCGTGCACTGCCAAGAGAGGGGG  500

seq1  AATAGAAGTTAGAGAACCCAGGACCACCTTGGCTGTGCTGTGCTTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGTTAGAGAACCCAGGACCACCTTGGCTGTGCTGTGCTTTACTG  550

seq1  GCTGCCATCTATCTCCCTAGTATCCTGGCACCTCTTTACTTTTGATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATCTATCTCCCTAGTATCCTGGCACCTCTTTACTTTTGATTTTG  600

seq1  TTATTATGGGTTGTTTTTTGTAACCCAACCTTTAACTCCTGATCTCCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGGGTTGTTTTTTGTAACCCAACCTTTAACTCCTGATCTCCTAC  650

seq1  GAGCTGGGATTGTAGGCCTGTGACACATATCTGACTGTTTTTATTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGATTGTAGGCCTGTGACACATATCTGACTGTTTTTATTCTTAA  700

seq1  GACACAGGGTCTTGCTAAACTGTCCAGCCTTACAAAAATGGACAAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGGTCTTGCTAAACTGTCCAGCCTTACAAAAATGGACAAGGCCT  750

seq1  CTAGAG-TTGGACAGATGAGAGTCTGAGTC-TTGGCCATTTCTACCTGTG  798
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  CTAGAGTTTGGACAGATGAGAGTCTGAGTCTTTGGCCATTTCTACCTGTG  800

seq1  CTACTTTTCACCATTCTAAGCCATTCTCCATTGTAAAGTGAAGAAAATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCACCATTCTAAGCCATTCTCCATTGTAAAGTGAAGAAAATGG  850

seq1  CACCATCTCCCTAAAGCTGTTTCAAGTCCAGTGCAGGTAGAGTGTATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTCCCTAAAGCTGTTTCAAGTCCAGTGCAGGTAGAGTGTATTAT  900

seq1  TACCTACATGCAACAAACTTATGTGATTTACTAGGAAGGAGAGGTTTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACATGCAACAAACTTATGTGATTTACTAGGAAGGAGAGGTTTTGA  950

seq1  GATTCCTGCTGGGAAAC-TGAGTTCCA-GGTAG--TGGATTTTGCAAATC  994
      ||||||||||||||||| ||||||||| |||||   ||||||||||| ||
seq2  GATTCCTGCTGGGAAACTTGAGTTCCAGGGTAGGTGGGATTTTGCAATTC  1000

seq1  GGGAGAAAACAGGGTTCCAGTCAGGTGCACATGATTGAACTGAGC-CGAT  1043
      |||||||||   ||||||||||| ||||  |||||   ||||||| ||||
seq2  GGGAGAAAAACAGGTTCCAGTCA-GTGCCAATGAT--GACTGAGCTCGAT  1047

seq1  ACAGGGAACTGCATGAAGGAG-ACCTAAAAGGGCCAGCGCTAAGCAG  1089
      |||  | |||||||||||||| ||||||||||| ||||||| |||||
seq2  ACA-CGTACTGCATGAAGGAGAACCTAAAAGGGTCAGCGCT-AGCAG  1092

seq1: chr19_7605477_7606568
seq2: B6Ng01-207G06.g_62_1160 (reverse)

seq1  CATGAG-CTGTCGCA-TCTTAAGATGATGAGT-TAGAAAGCTG-TCTTTC  46
      |||||| |||||||| ||||||||||||||||  ||||||||| ||||||
seq2  CATGAGCCTGTCGCATTCTTAAGATGATGAGTAGAGAAAGCTGTTCTTTC  50

seq1  AGGTCACCCTAGTAATTGGGATGCTCCTAATTATTACTTTTTAA-GTTTA  95
      |||||| |||||  | ||||||||||||||||| |||| ||||| |||||
seq2  AGGTCA-CCTAGGTAATGGGATGCTCCTAATTA-TACTATTTAAGGTTTA  98

seq1  ATCTTTC-TTTTCTTTTGAAACAGAG-TCTTTCTATGTAATTTGGATCTT  143
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  ATCTTTCTTTTTCTTTTGAAACAGAGTTCTTTCTATGTAATTTGGATCTT  148

seq1  CTAGTTATTTTTA-TTTTTGTCAGGCAG-AGTTGTGATATGTAGTCCAAG  191
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CTAGTTATTTTTATTTTTTGTCAGGCAGAAGTTGTGATATGTAGTCCAAG  198

seq1  TTGGCCTCAGATTCATAGCAATTCTTTTGCCTCAGTCTCTTAAGTCCTAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAGATTCATAGCAATTCTTTTGCCTCAGTCTCTTAAGTCCTAG  248

seq1  ACAAATGTGTGCTGCCATATCTCTTCTGTTAAGATTTATTATTTATTTAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTGTGCTGCCATATCTCTTCTGTTAAGATTTATTATTTATTTAT  298

seq1  GTGTATATCTCTGGAGTGGGTACCTGAATACACAGTCAGACATTAGATCT  341
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGTATATCTCTGGAGTGGGTACCTGAAAACACAGTCAGACATTAGATCT  348

seq1  TCTGGAGCCCTAGTCACAGGAGGTTTTGAGCTTTATGATGTGGGTGCTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGCCCTAGTCACAGGAGGTTTTGAGCTTTATGATGTGGGTGCTGG  398

seq1  GAACTGAACTCTGGTCCTGCAAGAGCAGCAAGTGTTCTTAACTACTAAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACTCTGGTCCTGCAAGAGCAGCAAGTGTTCTTAACTACTAAGC  448

seq1  CATCTCTCCAGCCTCCTAGTGTCTGGTTCTTAACCATTTCTAACCAAGCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCTCCTAGTGTCTGGTTCTTAACCATTTCTAACCAAGCT  498

seq1  TTTAATTAATCTTTATATTTTTATACAAAGACTTGCTTTGTGGCTGTGGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAATCTTTATATTTTTATACAAAGACTTGCTTTGTGGCTGTGGT  548

seq1  TGGCCTGAAATATGTTATGTTGACCAATTTCACATTAAGCTTGTATGGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGAAATATGTTATGTTGACCAATTTCACATTAAGCTTGTATGGAT  598

seq1  CTCTTGCCTCTGCTTTCTAAGGGCTGGGATTATAGGCATATACTAATATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTCTGCTTTCTAAGGGCTGGGATTATAGGCATATACTAATATG  648

seq1  TCTGGCTTTGGTCTGGGATATTTGTCTTTTCTGACTTCCCGTTTAAGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTGGTCTGGGATATTTGTCTTTTCTGACTTCCCGTTTAAGCAG  698

seq1  AATCTCACGTAGCTTAGGTGGGCCTCAAACATTTCATGTAGCTGAGGATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACGTAGCTTAGGTGGGCCTCAAACATTTCATGTAGCTGAGGATG  748

seq1  ACTTTGAATTTTCTGATCCTTCTGTAACTACTTGTGGAAGGTTGGGATTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATTTTCTGATCCTTCTGTAACTACTTGTGGAAGGTTGGGATTA  798

seq1  CAGATATGTACCACCATACTGATTTGTATGATATTGGGATTAAACCAAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGTACCACCATACTGATTTGTATGATATTGGGATTAAACCAAGG  848

seq1  GCTCTGTGCATACTAGGCAAGTACTCTAACATATAGGTTATATCTTAGTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGCATACTAGGCAAGTACTCTAACATATAGGTTATATCTTAGTC  898

seq1  TCTCTTGAATATTTTCTGAAGTTAATTTCTAAGCTTTTTTTCTAAACTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAATATTTTCTGAAGTTAATTTCTAAGCTTTTTTTCTAAACTCT  948

seq1  TAAGAGCATTCAAATCTTTACTGTGACTTTTTACTTACTTTATTTGGCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCATTCAAATCTTTACTGTGACTTTTTACTTACTTTATTTGGCAT  998

seq1  GTACAAGAATATTCAGCATGTGTTTTTGTTATTTTTAGATTTGTGGGGGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGAATATTCAGCATGTGTTTTTGTTATTTTTAGATTTGTGGGGGA  1048

seq1  GAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATT  1098

seq1  C  1092
      |
seq2  C  1099