BAC Information

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BAC

Clone NameB6Ng01-207I05
Chromosome6 (Build37)19 (Build37)
Map Location 127,878,456 - 127,878,49052,958,189 - 52,958,723
singlet/doubletsingletsinglet
Overlap geneTspan11
Upstream geneRad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8
Downstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207I05.bB6Ng01-207I05.g
ACCGA026641GA026642
length316529
definitionB6Ng01-207I05.b B6Ng01-207I05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,878,456 - 127,878,490)(52,958,189 - 52,958,723)
sequence
acatcagttggaactacatgcacagggcctgaacatgatcagtccagcca
aaatgccagcatgggtggaggagggggccatgaagttccatccctatctg
aggagctatgagcagttgatgactacactgggagagggagagtcacttcc
cttcagggatgtggatcctgggatactagccatgtgccagactagccatg
tgccaaactagactacccatgtgtcagttccacacccatgaacacacagg
ccacactaaatgtattcagtcagtattcagagaggaaagagagagagaga
gagagagagagaatga
ttactctgtccttagccggggaccagcactctccattctatttagaatct
gtctcatttgtgatattatttggttgataataatagtccttcagcagtat
ataccaagggctatttctcttattcgggagagggctcagctcagcttcat
ataagaaaaatgaatgatggagactctcacctctgggaacatttttcttt
cctcatctcagggattagcagaaagcctgaggagggattggacattagcc
agagagattaaaggctttaatttaatttttcactgaccttaggtgtcagt
gtggtcttcatggacatctgtagaactcaaataagaggataattagaatg
taagaagagaggtatgcggaagtgaggataagtcagtcaaacagtagaga
tgctcagatgtctgtactctttcctcaggtacccagagtctagcctgcct
gccagcaaaactgtcaggatctcaggcacatctgaaaggtgtgcatacgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127878456_127878490
seq2: B6Ng01-207I05.b_334_371 (reverse)

seq1  TCATTCTCTCTCTCTCTCTCTCTCTCTCT---CTCTCT  35
      |||||||||||||||||||||||||||||   ||||||
seq2  TCATTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTCTCT  38

seq1: chr19_52958189_52958723
seq2: B6Ng01-207I05.g_67_601 (reverse)

seq1  CACACACACACACACACACACACACACACACGTATGCACACCTTTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGTATGCACACCTTTCAGAT  50

seq1  GTGCCTGAGATCCTGACAGTTTTGCTGGCAGGCAGGCTAGACTCTGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGAGATCCTGACAGTTTTGCTGGCAGGCAGGCTAGACTCTGGGTA  100

seq1  CCTGAGGAAAGAGTACAGACATCTGAGCATCTCTACTGTTTGACTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAAAGAGTACAGACATCTGAGCATCTCTACTGTTTGACTGACTT  150

seq1  ATCCTCACTTCCGCATACCTCTCTTCTTACATTCTAATTATCCTCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACTTCCGCATACCTCTCTTCTTACATTCTAATTATCCTCTTATT  200

seq1  TGAGTTCTACAGATGTCCATGAAGACCACACTGACACCTAAGGTCAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTACAGATGTCCATGAAGACCACACTGACACCTAAGGTCAGTGA  250

seq1  AAAATTAAATTAAAGCCTTTAATCTCTCTGGCTAATGTCCAATCCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATTAAAGCCTTTAATCTCTCTGGCTAATGTCCAATCCCTCCT  300

seq1  CAGGCTTTCTGCTAATCCCTGAGATGAGGAAAGAAAAATGTTCCCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTCTGCTAATCCCTGAGATGAGGAAAGAAAAATGTTCCCAGAGG  350

seq1  TGAGAGTCTCCATCATTCATTTTTCTTATATGAAGCTGAGCTGAGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCTCCATCATTCATTTTTCTTATATGAAGCTGAGCTGAGCCCTC  400

seq1  TCCCGAATAAGAGAAATAGCCCTTGGTATATACTGCTGAAGGACTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAATAAGAGAAATAGCCCTTGGTATATACTGCTGAAGGACTATTAT  450

seq1  TATCAACCAAATAATATCACAAATGAGACAGATTCTAAATAGAATGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCAAATAATATCACAAATGAGACAGATTCTAAATAGAATGGAGA  500

seq1  GTGCTGGTCCCCGGCTAAGGACAGAGTAAGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  GTGCTGGTCCCCGGCTAAGGACAGAGTAAGAATTC  535